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Type material in the NCBI Taxonomy Database

https://doi.org/10.1093/nar/gku1127
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf01570291openalex-snapshot
Klebsiella ornithinolytica sp. nov., formerly known as ornithine-positiveKlebsiella oxytoca
inferredcites →https://doi.org/10.1016/0378-1097(92)90647-7openalex-snapshot
International code of nomenclature of bacteria bacteriological code, 1990 revision
inferredcites →https://doi.org/10.1016/j.syapm.2012.12.006openalex-snapshot
Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names
inferredcites →https://doi.org/10.1016/j.syapm.2013.11.002openalex-snapshot
StrainInfo introduces electronic passports for microorganisms
inferredcites →https://doi.org/10.1016/s0092-8674(00)80310-4openalex-snapshot
Neandertal DNA Sequences and the Origin of Modern Humans
inferredcites →https://doi.org/10.1023/a:1013135831669openalex-snapshot
Heterogeneity of the Nucleotide Sequences of the 16S rRNA Genes of the Type Strain of Desulfotomaculum kuznetsovii
inferredcites →https://doi.org/10.1038/122881a0openalex-snapshot
International Commission on Zoological Nomenclature
inferredcites →https://doi.org/10.1038/nature01240openalex-snapshot
SAR11 clade dominates ocean surface bacterioplankton communities
inferredcites →https://doi.org/10.1038/nmeth.2575openalex-snapshot
Accurate and universal delineation of prokaryotic species
inferredcites →https://doi.org/10.1089/153623103322006562openalex-snapshot
Future-Proofing Biological Nomenclature
inferredcites →https://doi.org/10.1093/database/bau061openalex-snapshot
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
inferredcites →https://doi.org/10.1093/genetics/130.3.399openalex-snapshot
Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui.
inferredcites →https://doi.org/10.1093/nar/gkr1100openalex-snapshot
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
inferredcites →https://doi.org/10.1093/nar/gkr1178openalex-snapshot
The NCBI Taxonomy database
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkt1111openalex-snapshot
LPSN—list of prokaryotic names with standing in nomenclature
inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
inferredcites →https://doi.org/10.1093/nar/gkt1244openalex-snapshot
Ribosomal Database Project: data and tools for high throughput rRNA analysis
inferredcites →https://doi.org/10.1099/00207713-16-4-459openalex-snapshot
International Code of Nomenclature of Bacteria 1
inferredcites →https://doi.org/10.1099/00207713-42-1-166openalex-snapshot
How Close Is Close: 16S rRNA Sequence Identity May Not Be Sufficient To Guarantee Species Identity
inferredcites →https://doi.org/10.1099/00207713-44-1-174openalex-snapshot
Taxonomic Notes: A Proposal for Recording the Properties of Putative Taxa of Procaryotes
inferredcites →https://doi.org/10.1099/00207713-45-1-186openalex-snapshot
Taxonomic Note: Implementation of the Provisional Status Candidatus for Incompletely Described Procaryotes
inferredcites →https://doi.org/10.1099/00207713-45-1-195openalex-snapshot
Judicial Commission of the International Committee on Systematic Bacteriology: Minutes of the Meetings, 2 and 6 July 1994, Prague, Czech Republic
inferredcites →https://doi.org/10.1099/00207713-47-2-590openalex-snapshot
List of Bacterial Names with Standing in Nomenclature: a Folder Available on the Internet
inferredcites →https://doi.org/10.1099/00207713-49-2-663openalex-snapshot
Assignment of Centers for Disease Control group IVc-2 to the genus Ralstonia as Ralstonia paucula sp. nov.
inferredcites →https://doi.org/10.1099/00207713-51-3-925openalex-snapshot
Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov.
inferredcites →https://doi.org/10.1099/ijs.0.011775-0openalex-snapshot
Cryobacterium roopkundense sp. nov., a psychrophilic bacterium isolated from glacial soil
inferredcites →https://doi.org/10.1099/ijs.0.027607-0openalex-snapshot
Pseudonocardia kunmingensis sp. nov., an actinobacterium isolated from surface-sterilized roots of Artemisia annua L.
inferredcites →https://doi.org/10.1099/mic.0.055459-0openalex-snapshot
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
inferredcites →https://doi.org/10.1111/j.1095-8649.2011.02979.xopenalex-snapshot
Correct nomenclature and recommendations for preserving and cataloguing voucher material and genetic sequences
inferredcites →https://doi.org/10.1111/j.1574-6968.1992.tb05316.xopenalex-snapshot
International Code of Nomenclature of Bacteria Bacteriological Code, 1990 Revision
inferredcites →https://doi.org/10.1128/jb.179.10.3270-3276.1997openalex-snapshot
The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes
inferredcites →https://doi.org/10.1136/jcp.30.4.393-copenalex-snapshot
International Code of Nomenclature of Bacteria. Bacteriological Code
inferredcites →https://doi.org/10.11646/zootaxa.2632.1.4openalex-snapshot
Genetypes: a concept to help integrate molecular phylogenetics and taxonomy
inferredcites →https://doi.org/10.1186/1471-2105-14-60openalex-snapshot
Genome sequence-based species delimitation with confidence intervals and improved distance functions
inferredcites →https://doi.org/10.1371/journal.pbio.1001920openalex-snapshot
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
inferredcites →https://doi.org/10.1371/journal.pbio.1002005openalex-snapshot
The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima
inferredcites →https://doi.org/10.1371/journal.pone.0044271openalex-snapshot
Lesula: A New Species of Cercopithecus Monkey Endemic to the Democratic Republic of Congo and Implications for Conservation of Congo’s Central Basin
inferredcites →https://doi.org/10.1643/0045-8511(2000)000[0907:br]2.0.co;2openalex-snapshot
International Code of Zoological Nomenclature: Fourth Edition
inferredcites →https://doi.org/10.2323/jgam.47.247openalex-snapshot
Recharacterization of Pseudomonas fulva Iizuka and Komagata 1963, and proposals of Pseudomonas parafulva sp. nov. and Pseudomonas cremoricolorata sp. nov.
inferredcites →https://doi.org/10.3897/zookeys.150.2213openalex-snapshot
XML schemas and mark-up practices of taxonomic literature
inferredcites →https://doi.org/10.3897/zookeys.346.5753openalex-snapshot
GenSeq: An updated nomenclature and ranking for genetic sequences from type and non-type sources
inferredcites →https://doi.org/10.5281/zenodo.3484284openalex-snapshot
TaxPub: An Extension of the NLM/NCBI Journal Publishing DTD for Taxonomic Descriptions
inferredcites →https://doi.org/10.5860/choice.51-6739openalex-snapshot
Neanderthal man: in search of lost genomes
inferredcites →https://doi.org/10.5962/bhl.title.50608openalex-snapshot
International code of zoological nomenclature = Code international de nomenclature zoologique

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4695.5.2zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.11646/zootaxa.4706.3.1zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/nhcm.2.161331zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/zookeys.1203.117699zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.1002/9781119356196.ch9openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/9781683670438.mcm0128openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/9781683674849.mcm0128openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/pmic.201600023openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-030-14796-9_15openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-319-27951-0_17openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-319-59575-7_15openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-319-60053-6_15-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-15-3151-4_8openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s12033-025-01423-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s13225-019-00428-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bcab.2026.104144openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.biochi.2016.11.006openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.carbpol.2022.120057openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.csbj.2019.03.007openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.csbj.2022.05.024openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.funbio.2017.12.013openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e37422openalex-snapshot
MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome
inferred← citeshttps://doi.org/10.1016/j.microb.2025.100519openalex-snapshot
Functional transformation of leucine-rich repeat (LRR) polygalacturonase inhibitor protein (PGIP) of Moringa oleifera by dual mutation E146G and E218K in defense against Cercospora baticola
inferred← citeshttps://doi.org/10.1016/j.simyco.2018.05.001openalex-snapshot
Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation
inferred← citeshttps://doi.org/10.1016/j.syapm.2015.02.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.syapm.2020.126070openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.virusres.2018.02.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jnatprod.6b01085openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41467-019-10210-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41587-020-0501-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41598-025-10240-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s43705-022-00208-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1089/cmb.2017.0144openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bbx083openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bib/bbx120openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/bioinformatics/btz848openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/database/baaa062openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/database/baaf059openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/database/bay006openalex-snapshot
The NCBI BioCollections Database
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inferred← citeshttps://doi.org/10.1093/femsec/fiz045openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/femsle/fnad037openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/gbe/evab020openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/gbe/evx096openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/mmy/myv008openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkaa755openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkaa851openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkaa957openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkac813openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkad196openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkad527openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkad818openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkad830openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkad980openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gkag933openalex-snapshot
SingPro 2.0: a proteomics-centric knowledge base for single-cell multimodal profiling
inferred← citeshttps://doi.org/10.1093/nar/gku1130openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferred← citeshttps://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
inferred← citeshttps://doi.org/10.1093/nar/gkv1232openalex-snapshot
probeBase—an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016
inferred← citeshttps://doi.org/10.1093/nar/gkv1272openalex-snapshot
The Dfam database of repetitive DNA families
inferred← citeshttps://doi.org/10.1093/nar/gkv1290openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferred← citeshttps://doi.org/10.1093/nar/gkv1311openalex-snapshot
Biocuration of functional annotation at the European nucleotide archive
inferred← citeshttps://doi.org/10.1093/nar/gkw1017openalex-snapshot
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
inferred← citeshttps://doi.org/10.1093/nar/gkw1070openalex-snapshot
GenBank
inferred← citeshttps://doi.org/10.1093/nar/gkw935openalex-snapshot
PIECE 2.0: an update for the plant gene structure comparison and evolution database
inferred← citeshttps://doi.org/10.1093/nar/gkx1094openalex-snapshot
GenBank
inferred← citeshttps://doi.org/10.1093/nar/gkx1097openalex-snapshot
The international nucleotide sequence database collaboration
inferred← citeshttps://doi.org/10.1093/nar/gky879openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gky965openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/nar/gky989openalex-snapshot
GenBank
inferred← citeshttps://doi.org/10.1093/sysbio/syad068openalex-snapshot
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inferred← citeshttps://doi.org/10.1094/pbiomes-12-19-0067-rvwopenalex-snapshot
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inferred← citeshttps://doi.org/10.1094/pbiomes-4-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1094/phyto-11-20-0512-peropenalex-snapshot
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inferred← citeshttps://doi.org/10.1094/phytofr-05-22-0056-fiopenalex-snapshot
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inferred← citeshttps://doi.org/10.1098/rstb.2015.0329openalex-snapshot
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inferred← citeshttps://doi.org/10.1098/rstb.2015.0334openalex-snapshot
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inferred← citeshttps://doi.org/10.1098/rstb.2015.0336openalex-snapshot
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inferred← citeshttps://doi.org/10.1098/rstb.2015.0339openalex-snapshot
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inferred← citeshttps://doi.org/10.1099/ijsem.0.002809openalex-snapshot
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
inferred← citeshttps://doi.org/10.1099/ijsem.0.004066openalex-snapshot
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inferred← citeshttps://doi.org/10.1099/ijsem.0.005707openalex-snapshot
Collection and curation of prokaryotic genome assemblies from type strains at NCBI
inferred← citeshttps://doi.org/10.1101/027714openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/067132openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/078469openalex-snapshot
Real-time tagging of biomedical entities
inferred← citeshttps://doi.org/10.1101/2020.08.25.267591openalex-snapshot
A computational strategy for rapid on-site 16S metabarcoding with Oxford Nanopore sequencing
inferred← citeshttps://doi.org/10.1101/2022.01.17.476578openalex-snapshot
Meta-analysis of the black soldier fly ( Hermetia illucens ) microbiota based on 16S rRNA gene amplicon sequencing
inferred← citeshttps://doi.org/10.1101/2025.06.27.662019openalex-snapshot
Alignment-free Bacterial Taxonomy Classification with Genomic Language Models
inferred← citeshttps://doi.org/10.1101/gr.210641.116openalex-snapshot
Centrifuge: rapid and sensitive classification of metagenomic sequences
inferred← citeshttps://doi.org/10.1109/bibm.2018.8621537openalex-snapshot
Computational design of a legacy-based epitope vaccine against Human Cytomegalovirus
inferred← citeshttps://doi.org/10.1111/1462-2920.13658openalex-snapshot
Oscillospira and related bacteria – From metagenomic species to metabolic features
inferred← citeshttps://doi.org/10.1111/1462-2920.15112openalex-snapshot
Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences
inferred← citeshttps://doi.org/10.1111/1755-0998.13709openalex-snapshot
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
inferred← citeshttps://doi.org/10.1111/1755-0998.70100openalex-snapshot
From Permits to Samples: Addressing Key Challenges for High‐Quality Reference Genome Generation in Europe
inferred← citeshttps://doi.org/10.1111/mec.17812openalex-snapshot
In Vouchers We (Hope to) Trust: Unveiling Hidden Errors in GenBank 's Tetrapod Taxonomic Foundations
inferred← citeshttps://doi.org/10.1111/syen.12521openalex-snapshot
Describing biodiversity in the genomics era: A new species of Nearctic Cynipidae gall wasp and its genome
inferred← citeshttps://doi.org/10.1111/vop.12854openalex-snapshot
Current ocular microbiome investigations limit reproducibility and reliability: Critical review and opportunities
inferred← citeshttps://doi.org/10.1128/aem.01176-15openalex-snapshot
The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
inferred← citeshttps://doi.org/10.1128/cmr.00053-19openalex-snapshot
Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory
inferred← citeshttps://doi.org/10.1128/jb.00568-20openalex-snapshot
The Two TpsB-Like Proteins in Anabaena sp. Strain PCC 7120 Are Involved in Secretion of Selected Substrates
inferred← citeshttps://doi.org/10.1128/jcm.00986-19openalex-snapshot
Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing
inferred← citeshttps://doi.org/10.1128/mra.01056-22openalex-snapshot
Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis Strain
inferred← citeshttps://doi.org/10.1139/cjm-2017-0342openalex-snapshot
Rare unclassified 16S rRNA operational taxonomic units from the uncharted Engaño Bay (Argentinean Patagonia)
inferred← citeshttps://doi.org/10.1139/cjm-2020-0261openalex-snapshot
Endophytic fungus diversity in soybean plants submitted to conditions of elevated atmospheric CO2 and temperature
inferred← citeshttps://doi.org/10.1139/gen-2016-0046openalex-snapshot
Fungal DNA barcoding
inferred← citeshttps://doi.org/10.1139/gen-2018-0098openalex-snapshot
Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida
inferred← citeshttps://doi.org/10.1142/s0219720026710046openalex-snapshot
When current taxids make historical taxa look new
inferred← citeshttps://doi.org/10.1146/annurev-phyto-080614-120245openalex-snapshot
Identifying and Naming Plant-Pathogenic Fungi: Past, Present, and Future
inferred← citeshttps://doi.org/10.1155/2017/9363750openalex-snapshot
Computer-Aided Design of an Epitope-Based Vaccine against Epstein-Barr Virus
inferred← citeshttps://doi.org/10.1186/s12859-019-3052-6openalex-snapshot
Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy
inferred← citeshttps://doi.org/10.1186/s12864-019-5809-8openalex-snapshot
Association of Salmonella virulence factor alleles with intestinal and invasive serovars
inferred← citeshttps://doi.org/10.1186/s12866-017-0958-xopenalex-snapshot
Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi)
inferred← citeshttps://doi.org/10.1186/s12866-025-04145-7openalex-snapshot
Striking mycotoxin tolerance and zearalenone elimination capacity of the decaying wood associated yeast Sugiyamaella novakii (Trichomonascaceae)
inferred← citeshttps://doi.org/10.1186/s12866-025-04327-3openalex-snapshot
Metagenome-based identification of functional traits of the black soldier fly gut microbiome associated with larval performance
inferred← citeshttps://doi.org/10.1186/s13059-025-03877-zopenalex-snapshot
Holotype genome of the lesula provides insights into demography and evolution of a threatened primate lineage
inferred← citeshttps://doi.org/10.1186/s13321-023-00779-9openalex-snapshot
EMNPD: a comprehensive endophytic microorganism natural products database for prompt the discovery of new bioactive substances
inferred← citeshttps://doi.org/10.1186/s13326-017-0160-yopenalex-snapshot
Using semantics for representing experimental protocols
inferred← citeshttps://doi.org/10.1186/s40168-018-0399-2openalex-snapshot
ReprDB and panDB: minimalist databases with maximal microbial representation
inferred← citeshttps://doi.org/10.1186/s40793-016-0134-1openalex-snapshot
Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)
inferred← citeshttps://doi.org/10.1186/s40793-018-0313-3openalex-snapshot
Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing Janthinobacterium lividum ERGS5:01
inferred← citeshttps://doi.org/10.1186/s42523-024-00317-4openalex-snapshot
Microbial dynamics and vertical transmission of Escherichia coli across consecutive life stages of the black soldier fly (Hermetia illucens)
inferred← citeshttps://doi.org/10.1186/s43008-020-00033-zopenalex-snapshot
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007470openalex-snapshot
Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes
inferred← citeshttps://doi.org/10.1371/journal.pone.0132999openalex-snapshot
A Comprehensive Protocol for Improving the Description of Saprolegniales (Oomycota): Two Practical Examples (Saprolegnia aenigmatica sp. nov. and Saprolegnia racemosa sp. nov.)
inferred← citeshttps://doi.org/10.1371/journal.pone.0237507openalex-snapshot
Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera
inferred← citeshttps://doi.org/10.15177/seefor.20-17openalex-snapshot
DNA Barcoding of Fungi in the Forest Ecosystem of the Psunj and Papuk Mountains in Croatia
inferred← citeshttps://doi.org/10.15517/am.v33i2.46407openalex-snapshot
Identificación molecular de microorganismos en cultivos agrícolas, ornamentales y forestales en Costa Rica, 2009-2018. Parte 1
inferred← citeshttps://doi.org/10.15517/rac.v46i1.49867openalex-snapshot
Estudio preliminar de especies de Fusarium presentes en piña (Ananas comosus) en Costa Rica
inferred← citeshttps://doi.org/10.1590/1519-6984.256673openalex-snapshot
Sketched reference databases for genome-based taxonomy and comparative genomics
inferred← citeshttps://doi.org/10.20868/upm.thesis.55408openalex-snapshot
SeMAntic RepresenTation for experimental Protocols
inferred← citeshttps://doi.org/10.20944/preprints202106.0368.v1openalex-snapshot
Mash Sketched Reference Dataset for Genome-Based Taxonomy and Comparative Genomics
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3168663/v1openalex-snapshot
Alleleomes characterize the survivors of 3.5 billion years of bacterial evolution
inferred← citeshttps://doi.org/10.3389/fbinf.2024.1278228openalex-snapshot
Ten common issues with reference sequence databases and how to mitigate them
inferred← citeshttps://doi.org/10.3389/fbioe.2019.00058openalex-snapshot
Defending Our Public Biological Databases as a Global Critical Infrastructure
inferred← citeshttps://doi.org/10.3389/fenrg.2019.00111openalex-snapshot
Characterization of Core Microbiomes and Functional Profiles of Mesophilic Anaerobic Digesters Fed With Chlorella vulgaris Green Microalgae and Maize Silage
inferred← citeshttps://doi.org/10.3389/fgene.2021.768473openalex-snapshot
Simple Matching Using QIIME 2 and RDP Reveals Misidentified Sequences and an Underrepresentation of Fungi in Reference Datasets
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00022openalex-snapshot
Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an “Operational Group B. amyloliquefaciens” within the B. subtilis Species Complex
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01213openalex-snapshot
Toxin-Antitoxin Systems in Estuarine Synechococcus Strain CB0101 and Their Transcriptomic Responses to Environmental Stressors
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01659openalex-snapshot
Adaptation of Surface-Associated Bacteria to the Open Ocean: A Genomically Distinct Subpopulation of Phaeobacter gallaeciensis Colonizes Pacific Mesozooplankton
inferred← citeshttps://doi.org/10.3389/fmicb.2018.02285openalex-snapshot
The Planktonic Core Microbiome and Core Functions in the Cattle Rumen by Next Generation Sequencing
inferred← citeshttps://doi.org/10.3389/fmicb.2021.643682openalex-snapshot
Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1011342openalex-snapshot
Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem
inferred← citeshttps://doi.org/10.3389/fmicb.2022.880946openalex-snapshot
Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose Degradation and Terpenoid Synthesis
inferred← citeshttps://doi.org/10.3389/fpls.2023.1232288openalex-snapshot
Beneficial microbial consortium improves winter rye performance by modulating bacterial communities in the rhizosphere and enhancing plant nutrient acquisition
inferred← citeshttps://doi.org/10.3390/antibiotics11070887openalex-snapshot
Deep-Sea Sediments from the Southern Gulf of Mexico Harbor a Wide Diversity of PKS I Genes
inferred← citeshttps://doi.org/10.3390/d17050325openalex-snapshot
Insight into the Yeast Diversity of Hungarian Honeys
inferred← citeshttps://doi.org/10.3390/f12121714openalex-snapshot
Bacillus velezensis: A Treasure House of Bioactive Compounds of Medicinal, Biocontrol and Environmental Importance
inferred← citeshttps://doi.org/10.3390/genes13122280openalex-snapshot
Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice
inferred← citeshttps://doi.org/10.3390/genes14081657openalex-snapshot
Genomic Distribution of ushA-like Genes in Bacteria: Comparison to cpdB-like Genes
inferred← citeshttps://doi.org/10.3390/iecps2020-08878openalex-snapshot
Characterization of Olive-Associated Fungi of Cultivars with Different Levels of Resistance to Anthracnose
inferred← citeshttps://doi.org/10.3390/ijms160920748openalex-snapshot
Common Amino Acid Subsequences in a Universal Proteome—Relevance for Food Science
inferred← citeshttps://doi.org/10.3390/ijms24044150openalex-snapshot
Genomic Distribution of Pro-Virulent cpdB-like Genes in Eubacteria and Comparison of the Enzyme Specificity of CpdB-like Proteins from Salmonella enterica, Escherichia coli and Streptococcus suis
inferred← citeshttps://doi.org/10.3390/microorganisms10091720openalex-snapshot
A Comparative Analysis of the Core Proteomes within and among the Bacillus subtilis and Bacillus cereus Evolutionary Groups Reveals the Patterns of Lineage- and Species-Specific Adaptations
inferred← citeshttps://doi.org/10.3390/plants12142741openalex-snapshot
Antifungal Activity of Glucosinolate-Derived Nitriles and Their Synergistic Activity with Glucosinolate-Derived Isothiocyanates Distinguishes Various Taxa of Brassicaceae Endophytes and Soil Fungi
inferred← citeshttps://doi.org/10.3852/16-130openalex-snapshot
Sequence-based classification and identification of Fungi.
inferred← citeshttps://doi.org/10.3897/bdj.4.e8080openalex-snapshot
Challenges with using names to link digital biodiversity information
inferred← citeshttps://doi.org/10.3897/mycokeys.13.8140openalex-snapshot
Genomics and metagenomics technologies to recover ribosomal DNA and single-copy genes from old fruit-body and ectomycorrhiza specimens
inferred← citeshttps://doi.org/10.3897/zse.92.7469openalex-snapshot
Remarks on the taxonomy and nomenclature of the genus Hypsilurus Peters, 1867 (Reptilia, Agamidae, Amphibolurinae)
inferred← citeshttps://doi.org/10.53846/goediss-8348openalex-snapshot
Impact of rainforest conversion: How prokaryotic communities respond to anthropogenic land use changes
inferred← citeshttps://doi.org/10.6084/m9.figshare.25906499openalex-snapshot
Additional file 1 of Microbial dynamics and vertical transmission of Escherichia coli across consecutive life stages of the black soldier fly (Hermetia illucens)
inferred← citeshttps://doi.org/10.6084/m9.figshare.25906539openalex-snapshot
Additional file 2 of Microbial dynamics and vertical transmission of Escherichia coli across consecutive life stages of the black soldier fly (Hermetia illucens)
inferred← citeshttps://doi.org/10.6084/m9.figshare.26725697openalex-snapshot
Additional file 3 of Microbial dynamics and vertical transmission of Escherichia coli across consecutive life stages of the black soldier fly (Hermetia illucens)
inferred← citeshttps://doi.org/10.70675/623ee106z84fbz4dd1z99dbzf24c0d90766fopenalex-snapshot
Understanding and managing Zoological Nomenclature in the era of Big Data and Open Science
inferred← citeshttps://doi.org/10.7287/peerj.4795v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A guideline for reporting experimental protocols in life sciences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4795v0.1/reviews/2openalex-snapshot
Peer Review #2 of "A guideline for reporting experimental protocols in life sciences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4795v0.1/reviews/3openalex-snapshot
Peer Review #3 of "A guideline for reporting experimental protocols in life sciences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.4795v0.2/reviews/1openalex-snapshot
Peer Review #1 of "A guideline for reporting experimental protocols in life sciences (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.4795v0.2/reviews/4openalex-snapshot
Peer Review #4 of "A guideline for reporting experimental protocols in life sciences (v0.2)"
inferred← citeshttps://doi.org/10.7554/elife.94802openalex-snapshot
Alternative splicing across the tree of life
inferred← citeshttps://doi.org/10.7554/elife.94802.1openalex-snapshot
Evolutionary trends of alternative splicing
inferred← citeshttps://doi.org/10.7717/peerj.4795openalex-snapshot
A guideline for reporting experimental protocols in life sciences
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.