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Assessment of community-submitted ontology annotations from a novel database-journal partnership

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0907s13openalex-snapshot
PubSearch and PubFetch: A Simple Management System for Semiautomated Retrieval and Annotation of Biological Information from the Literature
inferredcites →https://doi.org/10.1002/cfg.496openalex-snapshot
Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages
inferredcites →https://doi.org/10.1007/s00018-011-0909-xopenalex-snapshot
Identification of putative cancer genes through data integration and comparative genomics between plants and humans
inferredcites →https://doi.org/10.1038/455047aopenalex-snapshot
The future of biocuration
inferredcites →https://doi.org/10.1038/nprot.2011.372openalex-snapshot
Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network
inferredcites →https://doi.org/10.1093/database/bar002openalex-snapshot
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data
inferredcites →https://doi.org/10.1093/database/bar004openalex-snapshot
Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study
inferredcites →https://doi.org/10.1093/database/bar022openalex-snapshot
MaizeGDB: curation and outreach go hand-in-hand
inferredcites →https://doi.org/10.1093/jxb/err401openalex-snapshot
The cutting crew - ribonucleases are key players in the control of plastid gene expression
inferredcites →https://doi.org/10.1093/nar/gkn803openalex-snapshot
The GOA database in 2009--an integrated Gene Ontology Annotation resource
inferredcites →https://doi.org/10.1093/nar/gkp1018openalex-snapshot
The Gene Ontology in 2010: extensions and refinements
inferredcites →https://doi.org/10.1093/nar/gkq1008openalex-snapshot
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics
inferredcites →https://doi.org/10.1104/pp.103.035907openalex-snapshot
Carpe Diem. Retooling the “Publish or Perish” Model into the “Share and Survive” Model
inferredcites →https://doi.org/10.1104/pp.104.900252openalex-snapshot
Plant Physiology and TAIR Partnership: Figure 1.
inferredcites →https://doi.org/10.1104/pp.112.193599openalex-snapshot
Plastids Are Major Regulators of Light Signaling in Arabidopsis
inferredcites →https://doi.org/10.1105/tpc.109.066050openalex-snapshot
Web-Queryable Large-Scale Data Sets for Hypothesis Generation in Plant Biology
inferredcites →https://doi.org/10.1128/mmbr.00017-10openalex-snapshot
Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology
inferredcites →https://doi.org/10.1186/1471-2105-10-228openalex-snapshot
Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation
inferredcites →https://doi.org/10.1186/1471-2105-9-s5-s2openalex-snapshot
Gene Ontology annotations: what they mean and where they come from
inferredcites →https://doi.org/10.1186/1471-2164-9-103openalex-snapshot
Sequencing and analysis of the gene-rich space of cowpea
inferredcites →https://doi.org/10.1186/1745-6150-5-12openalex-snapshot
Community annotation in biology
inferredcites →https://doi.org/10.4161/org.6.2.11294openalex-snapshot
The Renal Gene Ontology Annotation Initiative

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/0471250953.bi0111s9openalex-snapshot
Using the Arabidopsis Information Resource ( TAIR ) to Find Information About Arabidopsis Genes
inferred← citeshttps://doi.org/10.1002/cpbi.36openalex-snapshot
Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes
inferred← citeshttps://doi.org/10.1002/cpz1.574openalex-snapshot
Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes
inferred← citeshttps://doi.org/10.1002/dvg.22877openalex-snapshot
The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome
inferred← citeshttps://doi.org/10.1007/978-981-97-3962-2_4openalex-snapshot
Connection and Curation of Corpus (Labeled and Unlabeled)
inferred← citeshttps://doi.org/10.1007/s00299-026-03844-3openalex-snapshot
Overexpression of PagAPX8 promotes poplar growth and enhances tolerance to drought and salt stress
inferred← citeshttps://doi.org/10.1007/s12035-013-8489-4openalex-snapshot
Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map
inferred← citeshttps://doi.org/10.1016/b978-0-444-53632-7.01124-2openalex-snapshot
Databases and Datasources at SIB, Swiss Institute of Bioinformatics
inferred← citeshttps://doi.org/10.1016/j.virol.2012.09.027openalex-snapshot
Microbial virus genome annotation—Mustering the troops to fight the sequence onslaught
inferred← citeshttps://doi.org/10.1093/database/baaa006openalex-snapshot
Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase
inferred← citeshttps://doi.org/10.1093/database/baaf063openalex-snapshot
Characterization and automated classification of sentences in the biomedical literature: a case study for biocuration of gene expression and protein kinase activity
inferred← citeshttps://doi.org/10.1093/database/bas047openalex-snapshot
Building an efficient curation workflow for the Arabidopsis literature corpus
inferred← citeshttps://doi.org/10.1093/database/bau094openalex-snapshot
Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing
inferred← citeshttps://doi.org/10.1093/database/baw018openalex-snapshot
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model
inferred← citeshttps://doi.org/10.1093/database/bay088openalex-snapshot
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
inferred← citeshttps://doi.org/10.1093/genetics/iyae027openalex-snapshot
The Arabidopsis Information Resource in 2024
inferred← citeshttps://doi.org/10.11606/d.11.2014.tde-05012015-175313openalex-snapshot
Propagação semi-automática de termos Gene Ontology a proteínas com potencial biotecnológico para a produção de bioenergia
inferred← citeshttps://doi.org/10.1186/s12915-016-0276-zopenalex-snapshot
Model organism databases: essential resources that need the support of both funders and users
inferred← citeshttps://doi.org/10.1187/cbe.13-07-0140openalex-snapshot
Immediate Dissemination of Student Discoveries to a Model Organism Database Enhances Classroom-Based Research Experiences
inferred← citeshttps://doi.org/10.1261/rna.065565.118openalex-snapshot
Expanding the horizons of microRNA bioinformatics
inferred← citeshttps://doi.org/10.4314/sajas.v51i6.9openalex-snapshot
Gene-set enrichment analysis of selective sweeps reveals phenotypic traits in Nguni cattle
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