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Hybrid curation of gene–mutation relations combining automated extraction and crowdsourcing
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1001/jama.2013.1414openalex-snapshot
Genomic Medicine, Health Information Technology, and Patient Care
inferredcites →https://doi.org/10.1007/978-3-642-31040-9_8openalex-snapshot
Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing
inferredcites →https://doi.org/10.1007/bf02883540openalex-snapshot
An essay towards solving a problem in the doctrine of chances
inferredcites →https://doi.org/10.1007/s10796-006-6103-2openalex-snapshot
Mutation Mining—A Prospector's Tale
inferredcites →https://doi.org/10.1016/j.jbi.2012.04.006openalex-snapshot
A SNPshot of PubMed to associate genetic variants with drugs, diseases, and adverse reactions
inferredcites →https://doi.org/10.1016/s0140-6736(13)60681-9openalex-snapshot
Genetic variants associated with warfarin dose in African-American individuals: a genome-wide association study
inferredcites →https://doi.org/10.1038/clpt.2012.96openalex-snapshot
Pharmacogenomics Knowledge for Personalized Medicine
inferredcites →https://doi.org/10.1038/nbt0910-897openalex-snapshot
The FEBS Letters/BioCreative II.5 experiment: making biological information accessible
inferredcites →https://doi.org/10.1038/nrg3011openalex-snapshot
The case for locus-specific databases
inferredcites →https://doi.org/10.1073/pnas.1201904109openalex-snapshot
A public resource facilitating clinical use of genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btm235openalex-snapshot
MutationFinder: a high-performance system for extracting point mutation mentions from text
inferredcites →https://doi.org/10.1093/bioinformatics/btn183openalex-snapshot
Integrating high dimensional bi-directional parsing models for gene mention tagging
inferredcites →https://doi.org/10.1093/bioinformatics/btq667openalex-snapshot
Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature
inferredcites →https://doi.org/10.1093/bioinformatics/btr042openalex-snapshot
GeneTUKit: a software for document-level gene normalization
inferredcites →https://doi.org/10.1093/bioinformatics/btt156openalex-snapshot
tmVar: a text mining approach for extracting sequence variants in biomedical literature
inferredcites →https://doi.org/10.1093/bioinformatics/btt333openalex-snapshot
Crowdsourcing for bioinformatics
inferredcites →https://doi.org/10.1093/biomet/45.3-4.296openalex-snapshot
AN ESSAY TOWARDS SOLVING A PROBLEM IN THE DOCTRINE OF CHANCES
inferredcites →https://doi.org/10.1093/database/bas030openalex-snapshot
Assessment of community-submitted ontology annotations from a novel database-journal partnership
inferredcites →https://doi.org/10.1093/database/bas047openalex-snapshot
Building an efficient curation workflow for the Arabidopsis literature corpus
inferredcites →https://doi.org/10.1093/database/bau003openalex-snapshot
Literature mining of genetic variants for curation: quantifying the importance of supplementary material
inferredcites →https://doi.org/10.1093/nar/29.1.308openalex-snapshot
dbSNP: the NCBI database of genetic variation
inferredcites →https://doi.org/10.1093/nar/29.1.98openalex-snapshot
The Mouse Gene Expression Database (GXD)
inferredcites →https://doi.org/10.1093/nar/gkn665openalex-snapshot
McKusick's Online Mendelian Inheritance in Man (OMIM(R))
inferredcites →https://doi.org/10.1093/nar/gkn748openalex-snapshot
HGVbaseG2P: a central genetic association database
inferredcites →https://doi.org/10.1093/nar/gkt1113openalex-snapshot
ClinVar: public archive of relationships among sequence variation and human phenotype
inferredcites →https://doi.org/10.1093/nar/gkt954openalex-snapshot
The mouse Gene Expression Database (GXD): 2014 update
inferredcites →https://doi.org/10.1145/1963192.1963335openalex-snapshot
The computer is the new sewing machine
inferredcites →https://doi.org/10.1177/001316446002000104openalex-snapshot
A Coefficient of Agreement for Nominal Scales
inferredcites →https://doi.org/10.1186/1471-2105-10-326openalex-snapshot
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s2openalex-snapshot
The gene normalization task in BioCreative III
inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s4openalex-snapshot
BioCreative III interactive task: an overview
inferredcites →https://doi.org/10.1186/1471-2105-12-s8-s5openalex-snapshot
Cross-species gene normalization by species inference
inferredcites →https://doi.org/10.1186/1471-2105-6-s1-s17openalex-snapshot
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
inferredcites →https://doi.org/10.1186/1471-2105-6-s1-s2openalex-snapshot
BioCreAtIvE Task 1A: gene mention finding evaluation
inferredcites →https://doi.org/10.1186/1471-2105-9-402openalex-snapshot
Abbreviation definition identification based on automatic precision estimates
inferredcites →https://doi.org/10.1186/1471-2164-13-s4-s10openalex-snapshot
Automated extraction and semantic analysis of mutation impacts from the biomedical literature
inferredcites →https://doi.org/10.1186/1479-7364-4-2-69openalex-snapshot
The Human Gene Mutation Database: providing a comprehensive central mutation database for molecular diagnostics and personalised genomics
inferredcites →https://doi.org/10.1186/gb-2008-9-s2-s2openalex-snapshot
Overview of BioCreative II gene mention recognition
inferredcites →https://doi.org/10.1186/gb-2008-9-s2-s3openalex-snapshot
Overview of BioCreative II gene normalization
inferredcites →https://doi.org/10.12688/f1000research.3-18.v2openalex-snapshot
Mutation extraction tools can be combined for robust recognition of genetic variants in the literature
inferredcites →https://doi.org/10.2196/jmir.2426openalex-snapshot
Web 2.0-Based Crowdsourcing for High-Quality Gold Standard Development in Clinical Natural Language Processing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-1-4939-3743-1_6openalex-snapshot
Text Mining to Support Gene Ontology Curation and Vice Versa
inferred← citeshttps://doi.org/10.1007/s00439-019-01970-5openalex-snapshot
Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives
inferred← citeshttps://doi.org/10.1007/s10619-017-7209-xopenalex-snapshot
Crowd enabled curation and querying of large and noisy text mined protein interaction data
inferred← citeshttps://doi.org/10.1016/b978-0-12-802115-6.00016-1openalex-snapshot
Crowdsourcing Advancements in Health Care Research
inferred← citeshttps://doi.org/10.1016/j.jbi.2019.103294openalex-snapshot
Neural network-based approaches for biomedical relation classification: A review
inferred← citeshttps://doi.org/10.1017/cbo9780511989421.011openalex-snapshot
Additional knowledge-based analysis approaches
inferred← citeshttps://doi.org/10.1038/nbt.4214openalex-snapshot
Making the right calls in precision oncology
inferred← citeshttps://doi.org/10.1038/ncomms12846openalex-snapshot
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
inferred← citeshttps://doi.org/10.1038/s41597-025-04905-0openalex-snapshot
Rethinking the production and publication of machine-readable expressions of research findings
inferred← citeshttps://doi.org/10.1093/bib/bbaa142openalex-snapshot
Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature
inferred← citeshttps://doi.org/10.1093/bib/bbv021openalex-snapshot
Crowdsourcing in biomedicine: challenges and opportunities
inferred← citeshttps://doi.org/10.1093/bib/bbv024openalex-snapshot
Community challenges in biomedical text mining over 10 years: success, failure and the future
inferred← citeshttps://doi.org/10.1093/bioinformatics/btx541openalex-snapshot
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine
inferred← citeshttps://doi.org/10.1093/bioinformatics/btz678openalex-snapshot
Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts
inferred← citeshttps://doi.org/10.1093/database/bav016openalex-snapshot
Scaling drug indication curation through crowdsourcing
inferred← citeshttps://doi.org/10.1093/database/bav116openalex-snapshot
Biocuration with insufficient resources and fixed timelines
inferred← citeshttps://doi.org/10.1093/database/baw043openalex-snapshot
BRONCO: Biomedical entity Relation ONcology COrpus for extracting gene-variant-disease-drug relations
inferred← citeshttps://doi.org/10.1093/database/baw051openalex-snapshot
A crowdsourcing workflow for extracting chemical-induced disease relations from free text
inferred← citeshttps://doi.org/10.1093/database/baw115openalex-snapshot
Crowdsourcing and curation: perspectives from biology and natural language processing
inferred← citeshttps://doi.org/10.1093/gigascience/giad036openalex-snapshot
CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning
inferred← citeshttps://doi.org/10.1093/jamia/ocw041openalex-snapshot
Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature
inferred← citeshttps://doi.org/10.1093/nar/gkz389openalex-snapshot
PubTator central: automated concept annotation for biomedical full text articles
inferred← citeshttps://doi.org/10.1109/access.2023.3262929openalex-snapshot
Functional Annotation and Analysis of Genetic Variants
inferred← citeshttps://doi.org/10.1142/9789814644730_0026openalex-snapshot
CROWDSOURCING AND MINING CROWD DATA
inferred← citeshttps://doi.org/10.1186/s12859-015-0549-5openalex-snapshot
KnowLife: a versatile approach for constructing a large knowledge graph for biomedical sciences
inferred← citeshttps://doi.org/10.1186/s12859-015-0844-1openalex-snapshot
Weakly supervised learning of biomedical information extraction from curated data
inferred← citeshttps://doi.org/10.1186/s12859-018-2029-1openalex-snapshot
Deep learning of mutation-gene-drug relations from the literature
inferred← citeshttps://doi.org/10.1186/s13321-024-00868-3openalex-snapshot
PubChem synonym filtering process using crowdsourcing
inferred← citeshttps://doi.org/10.12688/f1000research.10788.1openalex-snapshot
Recent advances in predicting gene–disease associations
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005017openalex-snapshot
Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006390openalex-snapshot
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources
inferred← citeshttps://doi.org/10.1371/journal.pone.0152725openalex-snapshot
DiMeX: A Text Mining System for Mutation-Disease Association Extraction
inferred← citeshttps://doi.org/10.15346/hc.v6i1.6openalex-snapshot
MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment
inferred← citeshttps://doi.org/10.17352/2581-4265.000012openalex-snapshot
Crowd Sourced Assessment of Technical Skills (CSATS): A Scalable Assessment Tool for the Nursing Workforce
inferred← citeshttps://doi.org/10.2139/ssrn.5344843openalex-snapshot
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
inferred← citeshttps://doi.org/10.2196/jmir.9330openalex-snapshot
Mapping of Crowdsourcing in Health: Systematic Review
inferred← citeshttps://doi.org/10.2196/resprot.5028openalex-snapshot
Using Nonexperts for Annotating Pharmacokinetic Drug-Drug Interaction Mentions in Product Labeling: A Feasibility Study
inferred← citeshttps://doi.org/10.48550/arxiv.1609.01017openalex-snapshot
Crowdsourcing Information Extraction for Biomedical Systematic Reviews
inferred← citeshttps://doi.org/10.5772/intechopen.1013230openalex-snapshot
Perspectives Chapter: Data-Centric Strategies for Machine Learning-Driven Therapeutic Peptide Design – Challenges and Perspectives
inferred← citeshttps://doi.org/10.60692/x27bh-vs471openalex-snapshot
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
inferred← citeshttps://doi.org/10.6084/m9.figshare.26734689openalex-snapshot
Additional file 1 of PubChem synonym filtering process using crowdsourcing
inferred← citeshttps://doi.org/10.7189/jogh.08.010502openalex-snapshot
Applications of crowdsourcing in health: an overview
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