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Improving average ranking precision in user searches for biomedical research datasets

https://doi.org/10.1093/database/bax083
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00799-016-0174-6openalex-snapshot
Experiences in integrated data and research object publishing using GigaDB
inferredcites →https://doi.org/10.1016/j.eswa.2014.09.009openalex-snapshot
A new fuzzy logic based ranking function for efficient Information Retrieval system
inferredcites →https://doi.org/10.1016/s0306-4573(01)00023-1openalex-snapshot
Improving the retrieval effectiveness of very short queries
inferredcites →https://doi.org/10.1038/ng.3312openalex-snapshot
The European Genome-phenome Archive of human data consented for biomedical research
inferredcites →https://doi.org/10.1038/ng.3864openalex-snapshot
Finding useful data across multiple biomedical data repositories using DataMed
inferredcites →https://doi.org/10.1038/ng1007-1181openalex-snapshot
The NCBI dbGaP database of genotypes and phenotypes
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1038/sdata.2017.59openalex-snapshot
DATS, the data tag suite to enable discoverability of datasets
inferredcites →https://doi.org/10.1045/september2012-manghiopenalex-snapshot
OpenAIREplus: the European Scholarly Communication Data Infrastructure
inferredcites →https://doi.org/10.1080/08109028.2011.631275openalex-snapshot
Support the Manchester Manifesto: a case study of the free sharing of human genome data
inferredcites →https://doi.org/10.1093/database/baw166openalex-snapshot
Automatic query generation using word embeddings for retrieving passages describing experimental methods
inferredcites →https://doi.org/10.1093/database/bax061openalex-snapshot
A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge
inferredcites →https://doi.org/10.1093/jamia/ocv136openalex-snapshot
The NIH Big Data to Knowledge (BD2K) initiative
inferredcites →https://doi.org/10.1126/science.336.6077.22openalex-snapshot
Agencies Rally to Tackle Big Data
inferredcites →https://doi.org/10.1136/amiajnl-2013-001882openalex-snapshot
PhenDisco: phenotype discovery system for the database of genotypes and phenotypes
inferredcites →https://doi.org/10.1145/1390334.1390437openalex-snapshot
A simple and efficient sampling method for estimating AP and NDCG
inferredcites →https://doi.org/10.1145/582415.582416openalex-snapshot
Probabilistic models of information retrieval based on measuring the divergence from randomness
inferredcites →https://doi.org/10.1162/153244303322533223openalex-snapshot
10.1162/153244303322533223
inferredcites →https://doi.org/10.1162/tacl_a_00134openalex-snapshot
Improving Distributional Similarity with Lessons Learned from Word Embeddings
inferredcites →https://doi.org/10.13140/2.1.2393.1847openalex-snapshot
Software Framework for Topic Modelling with Large Corpora
inferredcites →https://doi.org/10.1371/journal.pone.0024357openalex-snapshot
Public Availability of Published Research Data in High-Impact Journals
inferredcites →https://doi.org/10.1371/journal.pone.0121409openalex-snapshot
When Data Sharing Gets Close to 100%: What Human Paleogenetics Can Teach the Open Science Movement
inferredcites →https://doi.org/10.14806/ej.18.b.540openalex-snapshot
Answering Gene Ontology terms to proteomics questions by supervised macro reading in Medline
inferredcites →https://doi.org/10.2196/jmir.2043openalex-snapshot
Building a Transnational Biosurveillance Network Using Semantic Web Technologies: Requirements, Design, and Preliminary Evaluation
inferredcites →https://doi.org/10.3233/978-1-60750-044-5-175openalex-snapshot
Biomedical Data Management: A Proposal Framework
inferredcites →https://doi.org/10.3233/978-1-61499-101-4-204openalex-snapshot
An advanced search engine for patent analytics in medicinal chemistry
inferredcites →https://doi.org/10.48550/arxiv.1301.3781openalex-snapshot
Efficient Estimation of Word Representations in Vector Space
inferredcites →https://doi.org/10.48550/arxiv.1401.4590openalex-snapshot
Combining Evaluation Metrics via the Unanimous Improvement Ratio and its Application to Clustering Tasks
inferredcites →https://doi.org/10.48550/arxiv.1605.07891openalex-snapshot
Query Expansion with Locally-Trained Word Embeddings

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-022-34435-xopenalex-snapshot
Systematic tissue annotations of genomics samples by modeling unstructured metadata
inferred← citeshttps://doi.org/10.1093/database/baaa026openalex-snapshot
UPCLASS: a deep learning-based classifier for UniProtKB entry publications
inferred← citeshttps://doi.org/10.1093/database/baad017openalex-snapshot
Assessing the use of supplementary materials to improve genomic variant discovery
inferred← citeshttps://doi.org/10.1093/database/bax103openalex-snapshot
Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016
inferred← citeshttps://doi.org/10.1093/database/bay129openalex-snapshot
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt
inferred← citeshttps://doi.org/10.1101/2021.05.10.443525openalex-snapshot
Systematic tissue annotations of –omics samples by modeling unstructured metadata
inferred← citeshttps://doi.org/10.1101/2023.04.11.22281038openalex-snapshot
Online health search via multi-dimensional information quality assessment based on deep language models
inferred← citeshttps://doi.org/10.1101/842062openalex-snapshot
UPCLASS: a Deep Learning-based Classifier for UniProtKB Entry Publications
inferred← citeshttps://doi.org/10.1109/metroxraine66377.2025.11340462openalex-snapshot
About the Importance of Open Data in Biomedical Research
inferred← citeshttps://doi.org/10.1136/bmjopen-2023-079760openalex-snapshot
Did high frequency phone surveys during the COVID-19 pandemic include disability questions? An assessment of COVID-19 surveys from March 2020 to December 2022
inferred← citeshttps://doi.org/10.1159/000515908openalex-snapshot
Utilizing Artificial Intelligence to Manage COVID-19 Scientific Evidence Torrent with Risklick AI: A Critical Tool for Pharmacology and Therapy Development
inferred← citeshttps://doi.org/10.1515/9783112215722-004openalex-snapshot
834 Fuzzy Logic System Implementation in Health Data Management Frameworks
inferred← citeshttps://doi.org/10.2196/30161openalex-snapshot
Information Retrieval in an Infodemic: The Case of COVID-19 Publications
inferred← citeshttps://doi.org/10.2196/42630openalex-snapshot
Online Health Search Via Multidimensional Information Quality Assessment Based on Deep Language Models: Algorithm Development and Validation
inferred← citeshttps://doi.org/10.23889/ijpds.v8i6.2477openalex-snapshot
Data resource profile: the disability statistics questionnaire review database (DS-QR Database): a database of population censuses and household surveys with internationally comparable disability questions
inferred← citeshttps://doi.org/10.3897/rio.8.e81136openalex-snapshot
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