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Spatio-temporal changes of small protist and free-living bacterial communities in a temperate dimictic lake: insights from metabarcoding and machine learning
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Large-scale ocean connectivity and planktonic body size
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Global determinants of freshwater and marine fish genetic diversity
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Pathogenic lineage of Perkinsea associated with mass mortality of frogs across the United States
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Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform
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inferredcites →https://doi.org/10.1038/s41598-023-30228-4openalex-snapshot
Taxonomic composition, community structure and molecular novelty of microeukaryotes in a temperate oligomesotrophic lake as revealed by metabarcoding
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The vulnerability of lakes to climate change along an altitudinal gradient
inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
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Some free-living flagellates (protista) from anoxic habitats
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Spatial synchrony in microbial community dynamics: testing among-year and lake patterns
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
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ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
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Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes
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Microbial eukaryote assemblages and potential novel diversity in four tropical East African Great Lakes
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Mixoplankton and mixotrophy: future research priorities
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Interannual variability in species composition explained as seasonally entrained chaos
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Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems
inferredcites →https://doi.org/10.1111/1462-2920.12666openalex-snapshot
Protistan diversity in a permanently stratified meromictic lake (Lake A latsee, SW G ermany)
inferredcites →https://doi.org/10.1111/1462-2920.12907openalex-snapshot
Single‐cell genomics of uncultivated deep‐branching magnetotactic bacteria reveals a conserved set of magnetosome genes
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Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing
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Microbial eukaryote communities exhibit robust biogeographical patterns along a gradient of Patagonian and Antarctic lakes
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Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes
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Factors shaping community patterns of protists and bacteria on a European scale
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Freshwater protists: unveiling the unexplored in a large floodplain system
inferredcites →https://doi.org/10.1111/1758-2229.12439openalex-snapshot
Vertical partitioning of freshwater bacterioplankton community in a deep mesotrophic lake with a fully oxygenated hypolimnion (Lake Biwa, Japan)
inferredcites →https://doi.org/10.1111/ele.12714openalex-snapshot
Mixotrophy everywhere on land and in water: the grand écart hypothesis
inferredcites →https://doi.org/10.1111/evo.14295openalex-snapshot
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Warming and oligotrophication cause shifts in freshwater phytoplankton communities
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Storm impacts on phytoplankton community dynamics in lakes
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Longer duration of seasonal stratification contributes to widespread increases in lake hypoxia and anoxia
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Diversity in a hidden world: potential and limitation of next‐generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
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Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
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inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02787.xopenalex-snapshot
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Quantifying long‐term recurrence in planktonic microbial eukaryotes
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Multifaceted aspects of synchrony between freshwater prokaryotes and protists
inferredcites →https://doi.org/10.1111/mec.15864openalex-snapshot
Small freshwater ecosystems with dissimilar microbial communities exhibit similar temporal patterns
inferredcites →https://doi.org/10.1111/mec.16539openalex-snapshot
Seasonal dynamics of marine protist communities in tidally mixed coastal waters
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Eukaryotic plankton diversity in the sunlit ocean
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Determinants of community structure in the global plankton interactome
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Declining oxygen in the global ocean and coastal waters
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The PEG-model of seasonal succession of planktonic events in fresh waters
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.00607-09openalex-snapshot
Community Structure and Dynamics of Small Eukaryotes Targeted by New Oligonucleotide Probes: New Insight into the Lacustrine Microbial Food Web
inferredcites →https://doi.org/10.1128/aem.71.10.5935-5942.2005openalex-snapshot
Genetic Diversity of Small Eukaryotes in Lakes Differing by Their Trophic Status
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Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160251openalex-snapshot
Beyond the Plankton Ecology Group (PEG) Model: Mechanisms Driving Plankton Succession
inferredcites →https://doi.org/10.1186/s40168-020-00858-1openalex-snapshot
Using soil bacterial communities to predict physico-chemical variables and soil quality
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A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0081232openalex-snapshot
Patterns in the Composition of Microbial Communities from a Subtropical River: Effects of Environmental, Spatial and Temporal Factors
inferredcites →https://doi.org/10.1371/journal.pone.0230284openalex-snapshot
Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1890/04-1587openalex-snapshot
DOES ECOSYSTEM SIZE DETERMINE AQUATIC BACTERIAL RICHNESS?
inferredcites →https://doi.org/10.24072/pcjournal.173openalex-snapshot
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes
inferredcites →https://doi.org/10.31338/uw.9788323511632openalex-snapshot
Słodkowodne skorupiaki planktonowe. Klucz do oznaczania gatunków
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3354/ame01301openalex-snapshot
Protistan diversity in suboxic and anoxic waters of the Gotland Deep (Baltic Sea) as revealed by 18S rRNA clone libraries
inferredcites →https://doi.org/10.3354/ame016153openalex-snapshot
Trophic roles of heterotrophic nanoflagellates and ciliates among planktonic organisms in a hypereutrophic pond
inferredcites →https://doi.org/10.3354/ame01744openalex-snapshot
Contrasting seasonal and interannual environmental drivers in bacterial communities within a large shallow lake: evidence from a seven year survey
inferredcites →https://doi.org/10.3354/ame01843openalex-snapshot
Seasonal dynamics of heterotrophic and plastidic protists in the water column of Lake Biwa, Japan
inferredcites →https://doi.org/10.3389/fcimb.2022.922554openalex-snapshot
Exploring the Association Between Cervical Microbiota and HR-HPV Infection Based on 16S rRNA Gene and Metagenomic Sequencing
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Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change
inferredcites →https://doi.org/10.3389/fmicb.2014.00605openalex-snapshot
Benthic protists and fungi of Mediterranean deep hypsersaline anoxic basin redoxcline sediments
inferredcites →https://doi.org/10.3389/fmicb.2015.01289openalex-snapshot
Network of Interactions Between Ciliates and Phytoplankton During Spring
inferredcites →https://doi.org/10.3389/fmicb.2016.00130openalex-snapshot
Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)
inferredcites →https://doi.org/10.3389/fmicb.2016.00337openalex-snapshot
Composition and Interactions among Bacterial, Microeukaryotic, and T4-like Viral Assemblages in Lakes from Both Polar Zones
inferredcites →https://doi.org/10.3389/fmicb.2018.00777openalex-snapshot
Cyanobacterial Community Composition and Bacteria–Bacteria Interactions Promote the Stable Occurrence of Particle-Associated Bacteria
inferredcites →https://doi.org/10.3389/fmicb.2018.01290openalex-snapshot
Synchrony of Eukaryotic and Prokaryotic Planktonic Communities in Three Seasonally Sampled Austrian Lakes
inferredcites →https://doi.org/10.3389/fmicb.2019.02359openalex-snapshot
Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)
inferredcites →https://doi.org/10.3389/fmicb.2021.735815openalex-snapshot
Emerging Parasitic Protists: The Case of Perkinsea
inferredcites →https://doi.org/10.3389/fmicb.2022.1034674openalex-snapshot
Insights into the biotechnology potential of Methanosarcina
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Niche Partitioning of Labyrinthulomycete Protists Across Sharp Coastal Gradients and Their Putative Relationships With Bacteria and Fungi
inferredcites →https://doi.org/10.3390/w10081057openalex-snapshot
Combined Effects of Experimental Warming and Eutrophication on Phytoplankton Dynamics and Nitrogen Uptake
inferredcites →https://doi.org/10.3897/mbmg.2.21519openalex-snapshot
Geographic distance and mountain ranges structure freshwater protist communities on a European scalе
inferredcites →https://doi.org/10.4081/jlimnol.2010.209openalex-snapshot
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Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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