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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf01732674openalex-snapshot
The architecture of 5S rRNA and its relation to function
inferredcites →https://doi.org/10.1016/j.mib.2008.09.011openalex-snapshot
A renaissance for the pioneering 16S rRNA gene
inferredcites →https://doi.org/10.1016/j.mimet.2009.09.012openalex-snapshot
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1038/ismej.2007.53openalex-snapshot
Pyrosequencing enumerates and contrasts soil microbial diversity
inferredcites →https://doi.org/10.1038/ismej.2009.109openalex-snapshot
Global ecological patterns in uncultured Archaea
inferredcites →https://doi.org/10.1038/ismej.2009.97openalex-snapshot
Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
inferredcites →https://doi.org/10.1038/nature07540openalex-snapshot
A core gut microbiome in obese and lean twins
inferredcites →https://doi.org/10.1038/nbt.1561openalex-snapshot
Single-molecule sequencing of an individual human genome
inferredcites →https://doi.org/10.1038/nmeth.1184openalex-snapshot
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
inferredcites →https://doi.org/10.1038/nmeth.1361openalex-snapshot
Accurate determination of microbial diversity from 454 pyrosequencing data
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nrmicro1978openalex-snapshot
Worlds within worlds: evolution of the vertebrate gut microbiota
inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-snapshot
Genomic insights that advance the species definition for prokaryotes
inferredcites →https://doi.org/10.1073/pnas.0507535103openalex-snapshot
The diversity and biogeography of soil bacterial communities
inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot
Microbial diversity in the deep sea and the underexplored “rare biosphere”
inferredcites →https://doi.org/10.1073/pnas.0611525104openalex-snapshot
Global patterns in bacterial diversity
inferredcites →https://doi.org/10.1073/pnas.1002355107openalex-snapshot
Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
inferredcites →https://doi.org/10.1093/bioinformatics/btl158openalex-snapshot
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/nar/gkm541openalex-snapshot
Short pyrosequencing reads suffice for accurate microbial community analysis
inferredcites →https://doi.org/10.1101/gr.085464.108openalex-snapshot
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
inferredcites →https://doi.org/10.1111/j.1462-2920.2009.02051.xopenalex-snapshot
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
inferredcites →https://doi.org/10.1126/science.1146689openalex-snapshot
Microbial Population Structures in the Deep Marine Biosphere
inferredcites →https://doi.org/10.1126/science.1155725openalex-snapshot
Evolution of Mammals and Their Gut Microbes
inferredcites →https://doi.org/10.1126/science.1171700openalex-snapshot
Topographical and Temporal Diversity of the Human Skin Microbiome
inferredcites →https://doi.org/10.1126/science.1177486openalex-snapshot
Bacterial Community Variation in Human Body Habitats Across Space and Time
inferredcites →https://doi.org/10.1126/science.276.5313.734openalex-snapshot
A Molecular View of Microbial Diversity and the Biosphere
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.00335-09openalex-snapshot
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
inferredcites →https://doi.org/10.1128/aem.01996-06openalex-snapshot
Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities
inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
inferredcites →https://doi.org/10.1371/journal.pone.0000197openalex-snapshot
The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing
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Heterogeneity across Neotropical aquatic environments affects prokaryotic and eukaryotic biodiversity based on environmental DNA
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inferred← citeshttps://doi.org/10.1002/edn3.498openalex-snapshot
e DNA metabarcoding analysis reveals the consequence of creating ecosystem‐scale refugia from deer grazing for the soil microbial communities
inferred← citeshttps://doi.org/10.1002/edn3.515openalex-snapshot
Single metabarcoding multiplex captures community‐level freshwater biodiversity and beyond
inferred← citeshttps://doi.org/10.1002/edn3.559openalex-snapshot
Assessing the gut microbiome and the influence of host genetics on a critically endangered primate, the northern muriqui (Brachyteles hypoxanthus)
inferred← citeshttps://doi.org/10.1002/edn3.70028openalex-snapshot
Mapping Biodiversity Coast‐to‐Coast‐to‐Coast Across Canada's Three Oceans Using eDNA Metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.70058openalex-snapshot
Unveiling Landscape‐Level Drivers of Freshwater Biodiversity Dynamics
inferred← citeshttps://doi.org/10.1002/edn3.70220openalex-snapshot
Molecular Surveillance of Honey Bee Hives Using eDNA Metabarcoding During Pollination Season
inferred← citeshttps://doi.org/10.1002/edn3.70228openalex-snapshot
Tunneling Dung Beetle Effects on Soil Microbial Communities and Nutrient Cycling in Pasturelands: Implications for Soil Carbon Dynamics
inferred← citeshttps://doi.org/10.1002/edn3.70260openalex-snapshot
Development of eNA Sampling for Early Detection of Pathogens in On‐Farm Water Sources
inferred← citeshttps://doi.org/10.1002/ehf2.12155openalex-snapshot
Heart Failure is Associated with Depletion of Core Intestinal Microbiota
inferred← citeshttps://doi.org/10.1002/elps.201800127openalex-snapshot
An accurate bacterial DNA quantification assay for HTS library preparation of human biological samples
inferred← citeshttps://doi.org/10.1002/ep.12645openalex-snapshot
polyhydroxyalkanoate production from different carbon substrates using sludge from a wastewater treatment plant: Microbial communities, polymer compositions, and thermal characteristics
inferred← citeshttps://doi.org/10.1002/essoar.10504955.1openalex-snapshot
A Quantitative Framework to Assess Hydrologic Connectivity
inferred← citeshttps://doi.org/10.1002/fft2.70281openalex-snapshot
Conjugated 2′‐Fucosyllactose–Potato Protein Hydrolysate as Novel Prebiotics
inferred← citeshttps://doi.org/10.1002/fsn3.1842openalex-snapshot
High‐sugar diet intake, physical activity, and gut microbiota crosstalk: Implications for obesity in rats
inferred← citeshttps://doi.org/10.1002/fsn3.2873openalex-snapshot
Biochemical indexes and gut microbiota testing as diagnostic methods for Penaeus monodon health and physiological changes during AHPND infection with food safety concerns
inferred← citeshttps://doi.org/10.1002/fsn3.3340openalex-snapshot
Exploring the effects of palm kernel meal feeding on the meat quality and rumen microorganisms of Qinghai Tibetan sheep
inferred← citeshttps://doi.org/10.1002/fsn3.3927openalex-snapshot
Modulation of the gut microbiome and Firmicutes phylum reduction by a nutraceutical blend in the obesity mouse model and overweight humans: A double‐blind clinical trial
inferred← citeshttps://doi.org/10.1002/fsn3.71851openalex-snapshot
Hericium erinaceus Extracts Exert Gastroprotective Effects Through Modulation of the Gut Microbiota and Metabolites
inferred← citeshttps://doi.org/10.1002/ijc.31190openalex-snapshot
Polymethoxyflavones prevent benzo[a]pyrene/dextran sodium sulfate‐induced colorectal carcinogenesis through modulating xenobiotic metabolism and ameliorate autophagic defect in ICR mice
inferred← citeshttps://doi.org/10.1002/ijch.201600003openalex-snapshot
Isolation of Marine Paracoccus sp. Ss63 from the Sponge Sarcotragus sp. and Characterization of its Quorum‐Sensing Chemical‐Signaling Molecules by LC‐MS/MS Analysis
inferred← citeshttps://doi.org/10.1002/imo2.70011openalex-snapshot
The performance of different methods in characterizing soil live prokaryotic diversity and abundance is highly variable
inferred← citeshttps://doi.org/10.1002/imt2.133openalex-snapshot
Rhizosphere interface microbiome reassembly by arbuscular mycorrhizal fungi weakens cadmium migration dynamics
inferred← citeshttps://doi.org/10.1002/imt2.17openalex-snapshot
The impact of aquaculture system on the microbiome and gut metabolome of juvenile Chinese softshell turtle ( Pelodiscus sinensis )
inferred← citeshttps://doi.org/10.1002/imt2.70004openalex-snapshot
Linking dietary fiber to human malady through cumulative profiling of microbiota disturbance
inferred← citeshttps://doi.org/10.1002/imt2.70151openalex-snapshot
Maternal and infant gut microbiome
inferred← citeshttps://doi.org/10.1002/imt2.78openalex-snapshot
QMD: A new method to quantify microbial absolute abundance differences between groups
inferred← citeshttps://doi.org/10.1002/jav.03542openalex-snapshot
Gut microbial taxa are associated with problem‐solving success in house sparrows
inferred← citeshttps://doi.org/10.1002/jav.03594openalex-snapshot
Bridging the gap: improving methodologies for future avian microbiome research
inferred← citeshttps://doi.org/10.1002/jctb.6693openalex-snapshot
Thermophilic waste air treatment of n‐alkanes in a two‐phase bubble column reactor: the effect of silicone oil addition
inferred← citeshttps://doi.org/10.1002/jeq2.20170openalex-snapshot
Pulp and paper mill sludges decrease soil erodibility
inferred← citeshttps://doi.org/10.1002/jeq2.20307openalex-snapshot
Soil bacterial community response to rhizoma peanut incorporation into Florida pastures
inferred← citeshttps://doi.org/10.1002/jeq2.20422openalex-snapshot
Matrix‐associated microbial communities in a nitrogen‐removing on‐site wastewater treatment system are largely structured by niche processes
inferred← citeshttps://doi.org/10.1002/jez.2722openalex-snapshot
Social signal manipulation and environmental challenges have independent effects on physiology, internal microbiome, and reproductive performance in tree swallows (Tachycineta bicolor)
inferred← citeshttps://doi.org/10.1002/jmv.70341openalex-snapshot
Analysis of Blood Microbiome From People Living With HIV and Donors by 16S rRNA Metagenomic Sequencing
inferred← citeshttps://doi.org/10.1002/jobm.201700133openalex-snapshot
Soil bacterial diversity changes in different broomcorn millet intercropping systems
inferred← citeshttps://doi.org/10.1002/jper.17-0377openalex-snapshot
Influence of periodontal treatment on subgingival and salivary microbiotas
inferred← citeshttps://doi.org/10.1002/jper.20-0194openalex-snapshot
Subgingival microbiome and clinical periodontal status in an elderly cohort: The WHICAP ancillary study of oral health
inferred← citeshttps://doi.org/10.1002/jpln.70054openalex-snapshot
Impacts of Biostimulants on Nitrous Oxide Emissions and the Soil Microbiome
inferred← citeshttps://doi.org/10.1002/jsfa.10596openalex-snapshot
Modulation of cecal microbiota in laying hens via intake of genetically modified corn with the maroACC or mCry1Ac genes
inferred← citeshttps://doi.org/10.1002/jsfa.13016openalex-snapshot
Integrating new variables into a framework to support cacao denomination of origin: a case study in Southwest Colombia
inferred← citeshttps://doi.org/10.1002/jsfa.9556openalex-snapshot
Bacterial community dynamics and physicochemical characteristics in natural fermentation of jiang‐shui, a traditional food made in northwest China
inferred← citeshttps://doi.org/10.1002/jsp2.70174openalex-snapshot
Patients With Chronic Low Back Pain Without Advanced Disk Degeneration Exhibit Gut Microbiome Dysbiosis: Evidence From an Age‐, Sex‐, and BMI ‐Matched Pilot Study
inferred← citeshttps://doi.org/10.1002/jwmg.1064openalex-snapshot
Application of genetics and genomics to wildlife epidemiology
inferred← citeshttps://doi.org/10.1002/ldr.2932openalex-snapshot
Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China
inferred← citeshttps://doi.org/10.1002/ldr.3272openalex-snapshot
Temporal dynamics of soil bacterial communities and multifunctionality are more sensitive to introduced plants than to microbial additions in a multicontaminated soil
inferred← citeshttps://doi.org/10.1002/ldr.3875openalex-snapshot
Converting croplands to orchards changes soil microbial community composition and co‐occurrence patterns
inferred← citeshttps://doi.org/10.1002/ldr.3893openalex-snapshot
Grazing exclusion regulates bacterial community in highly degraded semiarid soils from the Brazilian Caatinga biome
inferred← citeshttps://doi.org/10.1002/ldr.3973openalex-snapshot
Plant litter crust role in nutrients cycling potentials by bacterial communities in a sandy land ecosystem
inferred← citeshttps://doi.org/10.1002/ldr.4012openalex-snapshot
Performance of five typical warm‐season turfgrasses and their influence on soil bacterial community under a simulated tropical coral island environment
inferred← citeshttps://doi.org/10.1002/ldr.4112openalex-snapshot
Ecosystem restoration through aerial seeding: Interacting plant–soil microbiome effects on soil multifunctionality
inferred← citeshttps://doi.org/10.1002/ldr.4304openalex-snapshot
Shift in soil bacterial communities from K‐ to r‐strategists facilitates adaptation to grassland degradation
inferred← citeshttps://doi.org/10.1002/ldr.4842openalex-snapshot
From Sphagnum to shrub: Increased acidity reduces peat bacterial diversity and keystone microbial taxa imply peatland degradation
inferred← citeshttps://doi.org/10.1002/ldr.5468openalex-snapshot
Mixed Grazing Enhances Bacterial Diversity and Network Stability More Than Single Grazing in Both Nondegraded and Moderately Degraded Grasslands
inferred← citeshttps://doi.org/10.1002/ldr.5632openalex-snapshot
Artificial Reseeding Promotes Biodiversity Restoration in Alpine Sandy Meadow of the Eastern Qinghai‐Tibet Plateau
inferred← citeshttps://doi.org/10.1002/ldr.70026openalex-snapshot
Relationship Between Plant Communities and Soil Microbial Diversity and Community Structure in the Desert Steppe of Inner Mongolia
inferred← citeshttps://doi.org/10.1002/ldr.70454openalex-snapshot
Understanding Long‐Term Influence of Agroforestry Systems on Soil Microbiome Dynamics and Their Ecological Importance in Restored Sodic Soils of Indo‐Gangetic Plains
inferred← citeshttps://doi.org/10.1002/ldr.70922openalex-snapshot
Effects of Composite Reclamation Models of Sea Buckthorn, A Pioneer Species in Semi‐Arid Regions, on Soil Quality and Microbial Communities
inferred← citeshttps://doi.org/10.1002/lno.11069openalex-snapshot
Key role of bacteria in the short‐term cycling of carbon at the abyssal seafloor in a low particulate organic carbon flux region of the eastern Pacific Ocean
inferred← citeshttps://doi.org/10.1002/lno.11091openalex-snapshot
Biological transformation of Arctic dissolved organic matter in a NE Greenland fjord
inferred← citeshttps://doi.org/10.1002/lno.11182openalex-snapshot
Biogeochemistry, microbial activity, and diversity in surface and subsurface deep‐sea sediments of South China Sea
inferred← citeshttps://doi.org/10.1002/lno.11235openalex-snapshot
Anaerobic methane oxidation is an important sink for methane in the ocean's largest oxygen minimum zone
inferred← citeshttps://doi.org/10.1002/lno.11319openalex-snapshot
Eukaryotic influence on the oceanic biological carbon pump in the Scotia Sea as revealed by 18S rRNA gene sequencing of suspended and sinking particles
inferred← citeshttps://doi.org/10.1002/lno.11869openalex-snapshot
Bacterioplankton respond with similar transcriptional activity to allochthonous dissolved organic matter in coastal and offshore Lake Michigan
inferred← citeshttps://doi.org/10.1002/lno.12321openalex-snapshot
High diversity of microsporidian parasites and new planktonic hosts in freshwater and marine ecosystems
inferred← citeshttps://doi.org/10.1002/lno.12324openalex-snapshot
An efficient diazotroph‐derived nitrogen transfer pathway in coral reef system
inferred← citeshttps://doi.org/10.1002/lno.70061openalex-snapshot
Experimental evidence of dust‐driven shifts in production, chlorophyll a, and community composition in mountain lakes
inferred← citeshttps://doi.org/10.1002/lno.70103openalex-snapshot
Daphnia ‐associated bacterial communities correlate with diet quantity, environmental conditions, and epidemic size across natural outbreaks
inferred← citeshttps://doi.org/10.1002/lol2.70178openalex-snapshot
Higher methanotroph abundance and bottom‐water methane in ponds with floating photovoltaic arrays
inferred← citeshttps://doi.org/10.1002/maco.70032openalex-snapshot
Microbiological Characterization of Natural Seawater Collected on the Brazilian Atlantic Coast—Impact on Carbon Steel Corrosion
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