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Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Plastid Evolution: Remnant Algal Genes in Ciliates

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Evolution of galactoglycerolipid biosynthetic pathways – From cyanobacteria to primary plastids and from primary to secondary plastids

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Plastid Genes in a Non-Photosynthetic Dinoflagellate

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Emerging Diversity within Chrysophytes, Choanoflagellates and Bicosoecids Based on Molecular Surveys

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The pathway of nitrogen assimilation in plants

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Chloroplast Evolution: Secondary Symbiogenesis and Multiple Losses

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Galactolipids rule in seed plants

inferredcites →https://doi.org/10.1016/s1434-4610(99)70010-6openalex-snapshot

Phylogenetic Analysis of the SSU rRNA from Members of the Chrysophyceae

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Sulfur Assimilation and the Role of Sulfur in Plant Metabolism: A Survey

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Cobalamin Requirement in Chrysophyceae

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Probing the evolution, ecology and physiology of marine protists using transcriptomics

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Mixotrophy in planktonic protists: an overview

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MIXOTROPHY AND NITROGEN UPTAKE BY PFIESTERIA PISCICIDA (DINOPHYCEAE)

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Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

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Apicomplexan Parasites Possess Distinct Nuclear-encoded, but Apicoplast-localized, Plant-type Ferredoxin-NADP+ Reductase and Ferredoxin

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Ferredoxin-NADP+ Reductase and Ferredoxin of the Protozoan Parasite Toxoplasma gondii Interact Productivelyin Vitro and in Vivo

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Mono- and digalactosyldiacylglycerol composition of dinoflagellates. VII. Evidence against galactolipid production and plastid presence in the heterotrophic, basal dinoflagellate, Oxyrrhis marina

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Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass

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The role of glutamine synthetase and glutamate dehydrogenase in nitrogen assimilation and possibilities for improvement in the nitrogen utilization of crops

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Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

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Proposal of a Twin Aarginine Translocator System-Mediated Constraint against Loss of ATP Synthase Genes from Nonphotosynthetic Plastid Genomes

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A Non-photosynthetic Diatom Reveals Early Steps of Reductive Evolution in Plastids

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KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGG: new perspectives on genomes, pathways, diseases and drugs

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The endosymbiotic origin, diversification and fate of plastids

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The evolution, metabolism and functions of the apicoplast

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The light‐harvesting and protective functions of carotenoids in photosynthetic membranes

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High diversity of the ‘ Spumella ‐like’ flagellates: an investigation based on the SSU rRNA gene sequences of isolates from habitats located in six different geographic regions

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Mixotrophic Protists In Marine and Freshwater Ecosystems

inferredcites →https://doi.org/10.1111/j.1742-4658.2006.05475.xopenalex-snapshot

Quantitative analysis of the experimental O–J–I–P chlorophyll fluorescence induction kinetics

inferredcites →https://doi.org/10.1111/jeu.12287openalex-snapshot

Small but Manifold – Hidden Diversity in “ Spumella ‐like Flagellates”

inferredcites →https://doi.org/10.1111/jpy.12292openalex-snapshot

Diversity of nitrogen assimilation pathways among microbial photosynthetic eukaryotes

inferredcites →https://doi.org/10.1111/pre.12072openalex-snapshot

Multiple losses of photosynthesis in N itzschia ( B acillariophyceae)

inferredcites →https://doi.org/10.1128/aem.69.3.1442-1451.2003openalex-snapshot

Isolation of Novel Ultramicrobacteria Classified as Actinobacteria from Five Freshwater Habitats in Europe and Asia

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Algae Need Their Vitamins

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The Number, Speed, and Impact of Plastid Endosymbioses in Eukaryotic Evolution

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THE SHIKIMATE PATHWAY

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Plastid Evolution

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VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

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Lineage-specific variations of congruent evolution among DNA sequences from three genomes, and relaxed selective constraints on rbcL in Cryptomonas (Cryptophyceae)

inferredcites →https://doi.org/10.1186/1741-7007-4-12openalex-snapshot

The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured

inferredcites →https://doi.org/10.1201/9780849379901.ch15openalex-snapshot

Molecular systematics of the Chrysophyceae and Synurophyceae

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Reverse Evolution: Driving Forces Behind the Loss of Acquired Photosynthetic Traits

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Transcriptomic Analysis Reveals Evidence for a Cryptic Plastid in the Colpodellid Voromonas pontica, a Close Relative of Chromerids and Apicomplexan Parasites

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inferredcites →https://doi.org/10.3389/fmicb.2015.00319openalex-snapshot

Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability

inferredcites →https://doi.org/10.4319/lo.1990.35.2.0433openalex-snapshot

Carbon, nitrogen, and phosphorus budgets for the mixotrophic phytoflagellate Poterioochromonas malhamensis (Chrysophyceae) during bacterial ingestion

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Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogenetic diversity and dominant ecological traits of freshwater Antarctic Chrysophyceae

inferred← citeshttps://doi.org/10.1007/s10750-022-05075-5openalex-snapshot

Contribution of silica-scaled chrysophytes to ecosystems services: a review

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High molecular diversity in the functional group of small bacterivorous non-scaled chrysomonad flagellates

inferred← citeshttps://doi.org/10.1016/j.ejop.2024.126109openalex-snapshot

Comparison of mixotrophic and heterotrophic chrysomonads of similar size regarding bacterivory and growth rate

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Poteriospumella species in Vietnam with remarks on distribution and diversity of the genus

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inferred← citeshttps://doi.org/10.1073/pnas.1819976116openalex-snapshot

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inferred← citeshttps://doi.org/10.1080/23802359.2021.1923416openalex-snapshot

Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia

inferred← citeshttps://doi.org/10.1093/gbe/evaa096openalex-snapshot

Genomic Insights into Plastid Evolution

inferred← citeshttps://doi.org/10.1093/gbe/evz155openalex-snapshot

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inferred← citeshttps://doi.org/10.1093/gbe/evz171openalex-snapshot

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inferred← citeshttps://doi.org/10.1093/ismejo/wrae150openalex-snapshot

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inferred← citeshttps://doi.org/10.5281/zenodo.13321622openalex-snapshot

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inferred← citeshttps://doi.org/10.5507/fot.2023.001openalex-snapshot

Differences in pigment composition and concentration between phototrophic, mixotrophic, and heterotrophic Chrysophyceae

inferred← citeshttps://doi.org/10.5507/fot.2023.003openalex-snapshot

Effects of stressors on growth and competition between different cryptic taxa affiliated with Ochromonadales (Chrysophyceae)

inferred← citeshttps://doi.org/10.70675/991b1cd3ze91ez432fza67fz14ace1dd2b61openalex-snapshot

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inferred← citeshttps://doi.org/10.7287/peerj.5894v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.5894v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data (v0.1)"

inferred← citeshttps://doi.org/10.7717/peerj.17912openalex-snapshot

Insights from single-strain and mixed culture experiments on the effects of heatwaves on freshwater flagellates

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Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data

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