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The cryptic plastid of Euglena longa defines a new type of non-photosynthetic plastid organelles

https://doi.org/10.1101/765255
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20645openalex-snapshot
Macroevolution of complex cytoskeletal systems in euglenids
inferredcites →https://doi.org/10.1002/biof.5520180209openalex-snapshot
Phylloquinone, what can we learn from plants?
inferredcites →https://doi.org/10.1002/j.1537-2197.1987.tb08691.xopenalex-snapshot
STRUCTURE OF THE EUGLENOID STORAGE CARBOHYDRATE, PARAMYLON
inferredcites →https://doi.org/10.1002/jez.1401130106openalex-snapshot
Methods in the general biology and genetics of paramecium aurelia
inferredcites →https://doi.org/10.1002/jssc.201700171openalex-snapshot
Separation and identification of lipids in the photosynthetic cousins of Apicomplexa Chromera velia and Vitrella brassicaformis
inferredcites →https://doi.org/10.1007/0-306-48173-1_11openalex-snapshot
Reversion of Endosymbiosis?
inferredcites →https://doi.org/10.1007/978-3-319-54910-1_7openalex-snapshot
Euglena gracilis Genome and Transcriptome: Organelles, Nuclear Genome Assembly Strategies and Initial Features
inferredcites →https://doi.org/10.1007/bf00309557openalex-snapshot
Genes for components of the chloroplast translational apparatus are conserved in the reduced 73-kb plastid DNA of the nonphotosynthetic euglenoid flagellate Astasia longa
inferredcites →https://doi.org/10.1007/bf00309917openalex-snapshot
Genes for ribosomal proteins are retained on the 73 kb DNA from Astasia longa that resembles Euglena chloroplast DNA
inferredcites →https://doi.org/10.1007/bf00391749openalex-snapshot
Genes for the plastid elongation factor Tu and ribosomal protein S7 and six tRNA genes on the 73 kb DNA from Astasia longa that resembles the chloroplast DNA of Euglena
inferredcites →https://doi.org/10.1007/bf00410835openalex-snapshot
Growth and photosynthetic characteristics of euglena gracilis
inferredcites →https://doi.org/10.1007/s00294-016-0641-zopenalex-snapshot
An intact plastid genome is essential for the survival of colorless Euglena longa but not Euglena gracilis
inferredcites →https://doi.org/10.1007/s00294-017-0761-0openalex-snapshot
Reductive evolution of chloroplasts in non-photosynthetic plants, algae and protists
inferredcites →https://doi.org/10.1007/s10858-011-9570-9openalex-snapshot
A simple protocol for amino acid type selective isotope labeling in insect cells with improved yields and high reproducibility
inferredcites →https://doi.org/10.1007/s11103-006-0060-5openalex-snapshot
Characterization of an Arabidopsis thaliana mutant lacking a cytosolic non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase
inferredcites →https://doi.org/10.1007/s11120-016-0277-3openalex-snapshot
Physiological evidence for plasticity in glycolate/glycerate transport during photorespiration
inferredcites →https://doi.org/10.1016/0031-9422(91)80070-hopenalex-snapshot
Phylloquinone (Vitamin K1) biosynthesis inEuglena gracilis strain Z
inferredcites →https://doi.org/10.1016/b978-0-12-139904-7.50007-5openalex-snapshot
ENZYMES AND THEIR FUNCTIONAL LOCATION
inferredcites →https://doi.org/10.1016/j.aquabot.2014.06.012openalex-snapshot
Nitrogen and sulfur assimilation in plants and algae
inferredcites →https://doi.org/10.1016/j.bbalip.2016.04.015openalex-snapshot
Tangled evolutionary processes with commonality and diversity in plastidial glycolipid synthesis in photosynthetic organisms
inferredcites →https://doi.org/10.1016/j.cub.2016.11.056openalex-snapshot
An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids
inferredcites →https://doi.org/10.1016/j.cub.2017.09.015openalex-snapshot
The Origin and Diversification of Mitochondria
inferredcites →https://doi.org/10.1016/j.ijpara.2011.07.008openalex-snapshot
The search for the missing link: A relic plastid in Perkinsus?
inferredcites →https://doi.org/10.1016/j.ijpara.2016.08.005openalex-snapshot
The apicoplast: now you see it, now you don’t
inferredcites →https://doi.org/10.1016/j.pbi.2007.04.006openalex-snapshot
Tocopherol functions in photosynthetic organisms
inferredcites →https://doi.org/10.1016/j.plantsci.2011.07.018openalex-snapshot
Isoprenoid biosynthesis in eukaryotic phototrophs: A spotlight on algae
inferredcites →https://doi.org/10.1016/j.plipres.2019.01.002openalex-snapshot
Phytol metabolism in plants
inferredcites →https://doi.org/10.1016/j.protis.2006.09.004openalex-snapshot
Plastid Genes in a Non-Photosynthetic Dinoflagellate
inferredcites →https://doi.org/10.1016/s0005-2728(96)00112-0openalex-snapshot
Electron transfer and arrangement of the redox cofactors in photosystem I
inferredcites →https://doi.org/10.1016/s0022-5320(67)80154-0openalex-snapshot
The respiratory chain of colorless algae
inferredcites →https://doi.org/10.1021/np049892xopenalex-snapshot
The Methylerythritol Phosphate Pathway Contributes to Carotenoid But Not Phytol Biosynthesis in Euglena gracilis
inferredcites →https://doi.org/10.1023/a:1024112027440openalex-snapshot
Purification of recombinant non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Streptococcus pyogenes expressed in E. coli
inferredcites →https://doi.org/10.1038/nature03145openalex-snapshot
Rubisco without the Calvin cycle improves the carbon efficiency of developing green seeds
inferredcites →https://doi.org/10.1038/nm.3073openalex-snapshot
Malaria biology and disease pathogenesis: insights for new treatments
inferredcites →https://doi.org/10.1038/npg.els.0001314openalex-snapshot
C 3 Carbon Reduction Cycle
inferredcites →https://doi.org/10.1038/s41467-018-04344-zopenalex-snapshot
Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris
inferredcites →https://doi.org/10.1038/s41598-017-18805-wopenalex-snapshot
Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids
inferredcites →https://doi.org/10.1038/s41598-018-33663-wopenalex-snapshot
Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida
inferredcites →https://doi.org/10.1038/s41598-018-35389-1openalex-snapshot
Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses
inferredcites →https://doi.org/10.1042/bcj20160508openalex-snapshot
Sulfoquinovose in the biosphere: occurrence, metabolism and functions
inferredcites →https://doi.org/10.1042/bj3330381openalex-snapshot
Distribution of the mevalonate and glyceraldehyde phosphate/pyruvate pathways for isoprenoid biosynthesis in unicellular algae and the cyanobacterium Synechocystis PCC 6714
inferredcites →https://doi.org/10.1046/j.1529-8817.2003.02075.xopenalex-snapshot
PHYLOGENY OF EUGLENOPHYCEAE BASED ON SMALL SUBUNIT rDNA SEQUENCES: TAXONOMIC IMPLICATIONS1
inferredcites →https://doi.org/10.1073/pnas.1215142110openalex-snapshot
PLGG1 , a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters
inferredcites →https://doi.org/10.1073/pnas.1301251110openalex-snapshot
Atypical lipid composition in the purified relict plastid (apicoplast) of malaria parasites
inferredcites →https://doi.org/10.1073/pnas.1423790112openalex-snapshot
Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives
inferredcites →https://doi.org/10.1073/pnas.1819976116openalex-snapshot
Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes
inferredcites →https://doi.org/10.1074/jbc.270.42.24658openalex-snapshot
Cloning, Overproduction, and Characterization of the Escherichia coli Holo-acyl Carrier Protein Synthase
inferredcites →https://doi.org/10.1074/jbc.m009452200openalex-snapshot
Apicomplexan Parasites Possess Distinct Nuclear-encoded, but Apicoplast-localized, Plant-type Ferredoxin-NADP+ Reductase and Ferredoxin
inferredcites →https://doi.org/10.1074/jbc.m111.254979openalex-snapshot
Identification of Plant-like Galactolipids in Chromera velia, a Photosynthetic Relative of Malaria Parasites
inferredcites →https://doi.org/10.1078/1434-4610-00094openalex-snapshot
Vestigial Chloroplasts in Heterotrophic Stramenopiles Pteridomonas danica and Ciliophrys infusionum (Dictyochophyceae)
inferredcites →https://doi.org/10.1078/143446103764928521openalex-snapshot
Phylogeny and Taxonomic Revision of Plastid-Containing Euglenophytes based on SSU rDNA Sequence Comparisons and Synapomorphic Signatures in the SSU rRNA Secondary Structure
inferredcites →https://doi.org/10.1078/s1434-4610(04)70033-4openalex-snapshot
Complete Gene Map of the Plastid Genome of the Nonphotosynthetic Euglenoid Flagellate Astasia longa
inferredcites →https://doi.org/10.1080/19420889.2015.1116653openalex-snapshot
Metabolic pathway redundancy within the apicomplexan-dinoflagellate radiation argues against an ancient chromalveolate plastid
inferredcites →https://doi.org/10.1089/ars.2007.1931openalex-snapshot
The Ferredoxin/Thioredoxin System of Oxygenic Photosynthesis
inferredcites →https://doi.org/10.1093/bioinformatics/17.9.845openalex-snapshot
CHROMA: consensus-based colouring of multiple alignments for publication
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/dnares/dsr044openalex-snapshot
Phylogeny of Galactolipid Synthase Homologs Together with their Enzymatic Analyses Revealed a Possible Origin and Divergence Time for Photosynthetic Membrane Biogenesis
inferredcites →https://doi.org/10.1093/femsec/fiy039openalex-snapshot
Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics
inferredcites →https://doi.org/10.1093/gbe/evp047openalex-snapshot
The Complete Plastid Genome Sequence of the Secondarily Nonphotosynthetic Alga Cryptomonas paramecium: Reduction, Compaction, and Accelerated Evolutionary Rate
inferredcites →https://doi.org/10.1093/gbe/evr029openalex-snapshot
Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis
inferredcites →https://doi.org/10.1093/gbe/evz123openalex-snapshot
Subcellular Compartments Interplay for Carbon and Nitrogen Allocation in Chromera velia and Vitrella brassicaformis
inferredcites →https://doi.org/10.1093/jxb/ers208openalex-snapshot
Plant B Vitamin Pathways and their Compartmentation: a Guide for the Perplexed
inferredcites →https://doi.org/10.1093/jxb/erw399openalex-snapshot
Plants grow with a little help from their organelle friends
inferredcites →https://doi.org/10.1093/molbev/msi230openalex-snapshot
Mosaic Origin of the Heme Biosynthesis Pathway in Photosynthetic Eukaryotes
inferredcites →https://doi.org/10.1093/molbev/msn064openalex-snapshot
A Cryptic Algal Group Unveiled: A Plastid Biosynthesis Pathway in the Oyster Parasite Perkinsus marinus
inferredcites →https://doi.org/10.1093/molbev/msn075openalex-snapshot
Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina
inferredcites →https://doi.org/10.1093/molbev/msn285openalex-snapshot
The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msx172openalex-snapshot
A Non-photosynthetic Diatom Reveals Early Steps of Reductive Evolution in Plastids
inferredcites →https://doi.org/10.1093/nar/gkt263openalex-snapshot
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
inferredcites →https://doi.org/10.1098/rstb.2009.0273openalex-snapshot
The evolution, metabolism and functions of the apicoplast
inferredcites →https://doi.org/10.1101/cshperspect.a016105openalex-snapshot
Origin and Evolution of Plastids and Photosynthesis in Eukaryotes
inferredcites →https://doi.org/10.1104/pp.108.118745openalex-snapshot
Naphthoquinone-Dependent Generation of Superoxide Radicals by Quinone Reductase Isolated from the Plasma Membrane of Soybean
inferredcites →https://doi.org/10.1104/pp.113.233718openalex-snapshot
A Plastid without a Genome: Evidence from the Nonphotosynthetic Green Algal Genus Polytomella
inferredcites →https://doi.org/10.1105/tpc.111.089680openalex-snapshot
Lumen Thiol Oxidoreductase1, a Disulfide Bond-Forming Catalyst, Is Required for the Assembly of Photosystem II inArabidopsis
inferredcites →https://doi.org/10.1105/tpc.113.113373openalex-snapshot
Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family
inferredcites →https://doi.org/10.1105/tpc.15.00103openalex-snapshot
A Dedicated Type II NADPH Dehydrogenase Performs the Penultimate Step in the Biosynthesis of Vitamin K1 in Synechocystis and Arabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04305.xopenalex-snapshot
A bimodular oxidoreductase mediates the specific reduction of phylloquinone (vitamin K1) in chloroplasts
inferredcites →https://doi.org/10.1111/j.1550-7408.2008.00324.xopenalex-snapshot
Triosephosphate Isomerase Genes in Two Trophic Modes of Euglenoids (Euglenophyceae) and Their Phylogenetic Analysis
inferredcites →https://doi.org/10.1111/j.1550-7408.2009.00452.xopenalex-snapshot
Variability of Wax Ester Fermentation in Natural and Bleached Euglena gracilis Strains in Response to Oxygen and the Elongase Inhibitor Flufenacet
inferredcites →https://doi.org/10.1111/jeu.12282openalex-snapshot
Evolutionary History of the Enzymes Involved in the Calvin–Benson Cycle in Euglenids
inferredcites →https://doi.org/10.1111/nph.13279openalex-snapshot
When the lights go out: the evolutionary fate of free‐living colorless green algae
inferredcites →https://doi.org/10.1111/nph.16237openalex-snapshot
Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid
inferredcites →https://doi.org/10.1128/ec.00381-05openalex-snapshot
Molecular and Biochemical Analysis of Periplastidial Starch Metabolism in the Cryptophyte Guillardia theta
inferredcites →https://doi.org/10.1128/ec.00431-07openalex-snapshot
Nitrate Assimilation inChlamydomonas
inferredcites →https://doi.org/10.1128/ec.4.2.253-261.2005openalex-snapshot
Multiple Metabolic Roles for the Nonphotosynthetic Plastid of the Green Alga Prototheca wickerhamii
inferredcites →https://doi.org/10.1128/mmbr.00015-07openalex-snapshot
Function, Structure, and Evolution of the RubisCO-Like Proteins and Their RubisCO Homologs
inferredcites →https://doi.org/10.1139/b74-089openalex-snapshot
An electron microscope search for plastids in bleached Euglena gracilis and in Astasia longa
inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120144openalex-snapshot
The Number, Speed, and Impact of Plastid Endosymbioses in Eukaryotic Evolution
inferredcites →https://doi.org/10.1146/annurev.arplant.51.1.111openalex-snapshot
N ONPHOTOSYNTHETIC M ETABOLISM IN P LASTIDS
inferredcites →https://doi.org/10.1186/s12864-016-2540-6openalex-snapshot
De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions
inferredcites →https://doi.org/10.1194/jlr.m700476-jlr200openalex-snapshot
Subcellular localization and dynamics of a digalactolipid-like epitope in Toxoplasma gondii
inferredcites →https://doi.org/10.1199/tab.0018openalex-snapshot
Purine and Pyrimidine Nucleotide Synthesis and Metabolism
inferredcites →https://doi.org/10.1371/journal.pbio.1001889openalex-snapshot
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1002196openalex-snapshot
A Rice Plastidial Nucleotide Sugar Epimerase Is Involved in Galactolipid Biosynthesis and Improves Photosynthetic Efficiency
inferredcites →https://doi.org/10.1371/journal.pgen.1004355openalex-snapshot
A Lack of Parasitic Reduction in the Obligate Parasitic Green Alga Helicosporidium
inferredcites →https://doi.org/10.1371/journal.pone.0068232openalex-snapshot
Still Acting Green: Continued Expression of Photosynthetic Genes in the Heterotrophic Dinoflagellate Pfiesteria piscicida (Peridiniales, Alveolata)
inferredcites →https://doi.org/10.1371/journal.pone.0158790openalex-snapshot
RuBisCO in Non-Photosynthetic Alga Euglena longa: Divergent Features, Transcriptomic Analysis and Regulation of Complex Formation
inferredcites →https://doi.org/10.1515/znc-1989-5-621openalex-snapshot
5'-Monohydroxyphylloquinone as a Component of Photosystem I
inferredcites →https://doi.org/10.24729/00009403openalex-snapshot
Inability of Euglena gracilis z to Utilize Nitrate, Nitrite and Urea as the Nitrogen Sources
inferredcites →https://doi.org/10.3389/fmicb.2013.00369openalex-snapshot
Putting the N in dinoflagellates
inferredcites →https://doi.org/10.3389/fpls.2011.00050openalex-snapshot
The Metabolite Transporters of the Plastid Envelope: An Update
inferredcites →https://doi.org/10.3389/fpls.2015.00899openalex-snapshot
Understanding nitrate assimilation and its regulation in microalgae
inferredcites →https://doi.org/10.3390/md15030057openalex-snapshot
Characterization of a New Trioxilin and a Sulfoquinovosyl Diacylglycerol with Anti-Inflammatory Properties from the Dinoflagellate Oxyrrhis marina

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10811-020-02314-xopenalex-snapshot
Remediation of dairy wastewater by Euglena gracilis WZSL mutant and β-glucan production
inferred← citeshttps://doi.org/10.1016/j.parint.2021.102308openalex-snapshot
Retortamonads from vertebrate hosts share features of anaerobic metabolism and pre-adaptations to parasitism with diplomonads
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