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Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae)
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Rapid mitochondrial genome sequencing based on Oxford Nanopore Sequencing and a proxy for vertebrate species identification
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Is population subdivision different from speciation? From phylogeography to species delimitation
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Tandemly Repeated Sequences in the Mitochondrial DNA Control Region and Phylogeography of the Pike-PerchesStizostedion
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Origin and Evolution of Tandem Repeats in the Mitochondrial DNA Control Region of Shrikes (Lanius spp.)
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Comparison of phylogenetic trees
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Sequences from 14 mitochondrial genes provide a well-supported phylogeny of the Charadriiform birds congruent with the nuclear RAG-1 tree
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Limited phylogenetic distribution of a long tandem-repeat cluster in the mitochondrial control region in Bubo (Aves, Strigidae) and cluster variation in Blakiston’s fish owl (Bubo blakistoni)
inferredcites →https://doi.org/10.1016/j.ympev.2017.10.014openalex-snapshot
Mitochondrial phylogenomics and genome rearrangements in the barklice (Insecta: Psocodea)
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Mitochondrial phylogenomics of the Hymenoptera
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A combined approach of mitochondrial DNA and anchored nuclear phylogenomics sheds light on unrecognized diversity, phylogeny, and historical biogeography of the torrent frogs, genus Amolops (Anura: Ranidae)
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Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies
inferredcites →https://doi.org/10.1038/hdy.2008.62openalex-snapshot
Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
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Extensive gene rearrangements in the mitochondrial genomes of two egg parasitoids, Trichogramma japonicum and Trichogramma ostriniae (Hymenoptera: Chalcidoidea: Trichogrammatidae)
inferredcites →https://doi.org/10.1038/s41598-019-42621-zopenalex-snapshot
Linear Mitochondrial Genome in Anthozoa (Cnidaria): A Case Study in Ceriantharia
inferredcites →https://doi.org/10.1038/s41598-022-14121-0openalex-snapshot
Utilisation of Oxford Nanopore sequencing to generate six complete gastropod mitochondrial genomes as part of a biodiversity curriculum
inferredcites →https://doi.org/10.1038/srep13227openalex-snapshot
Extreme variation in patterns of tandem repeats in mitochondrial control region of yellow-browed tits (Sylviparus modestus, Paridae)
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Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata
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NanoPack: visualizing and processing long-read sequencing data
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Minimap2: pairwise alignment for nucleotide sequences
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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Mitonuclear Coevolution, but not Nuclear Compensation, Drives Evolution of OXPHOS Complexes in Bivalves
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SMS: Smart Model Selection in PhyML
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Evolutionary Rate Correlation between Mitochondrial-Encoded and Mitochondria-Associated Nuclear-Encoded Proteins in Insects
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ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
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Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
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Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
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Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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The Species versus Subspecies Conundrum: Quantitative Delimitation from Integrating Multiple Data Types within a Single Bayesian Approach in Hercules Beetles
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
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Diversification in a fluctuating island setting: rapid radiation of Ohomopterus ground beetles in the Japanese Islands
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MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
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SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
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The biogeography of mitochondrial and nuclear discordance in animals
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Parapatric genetic introgression and phenotypic assimilation: testing conditions for introgression between Hercules beetles (Dynastes, Dynastinae)
inferredcites →https://doi.org/10.1111/zoj.12393openalex-snapshot
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Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny
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INTRASPECIFIC PHYLOGEOGRAPHY: The Mitochondrial DNA Bridge Between Population Genetics and Systematics
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Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals
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Benchmarking of long-read assemblers for prokaryote whole genome sequencing
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Benchmarking of long-read assemblers for prokaryote whole genome sequencing
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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
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Ultraconserved Elements Sequencing as a Low-Cost Source of Complete Mitochondrial Genomes and Microsatellite Markers in Non-Model Amniotes
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Replication Origin of Mitochondrial DNA in Insects
inferredcites →https://doi.org/10.21805/bzn.v69i3.a11openalex-snapshot
Case 3590ScarabaeusLinnaeus, 1758,DynastesMacLeay, 1819, scarabaeinae Latreille, 1802, and dynastinae MacLeay, 1819 (Insecta, Coleoptera, scarabaeoidea): proposed conservation of usage
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MtDNA The small workhorse of evolutionary studies
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Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
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The Mitochondrial Genomes of 18 New Pleurosticti (Coleoptera: Scarabaeidae) Exhibit a Novel trnQ-NCR-trnI-trnM Gene Rearrangement and Clarify Phylogenetic Relationships of Subfamilies within Scarabaeidae
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Biodiversity comparison among phylogenetic diversity metrics and between three North American prairies
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The complete mitochondrial genome sequence of Oryctes rhinoceros (Coleoptera: Scarabaeidae) based on long-read nanopore sequencing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Large mitochondrial genomes in tenthredinid sawflies (Hymenoptera, Tenthredinidae)
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Comparative mitochondrial genome analysis of two biting midges, Dasyhelea ludingensis and Forcipomyia ( Lasiohelea ) taiwana (Diptera: Ceratopogonidae)
inferred← citeshttps://doi.org/10.1093/g3journal/jkad224openalex-snapshot
Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae)
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First report of the complete mitochondrial genome of 3 beetles (Coleoptera: Scarabaeidae) harming Gastrodia elata (Asparagales: Orchidaceae)
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inferred← citeshttps://doi.org/10.6084/m9.figshare.25322903openalex-snapshot
Additional file 1 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.25322988openalex-snapshot
Additional file 2 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.25670120openalex-snapshot
Additional file 1 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.25670292openalex-snapshot
Additional file 2 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645410openalex-snapshot
Additional file 1 of Comparative mitochondrial genome analysis of three leafhopper species of the genus Abrus Dai & Zhang (Hemiptera: Cicadellidae: Deltocephalinae) from China with phylogenetic implication
inferred← citeshttps://doi.org/10.6084/m9.figshare.26645413openalex-snapshot
Additional file 2 of Comparative mitochondrial genome analysis of three leafhopper species of the genus Abrus Dai & Zhang (Hemiptera: Cicadellidae: Deltocephalinae) from China with phylogenetic implication
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687160openalex-snapshot
Additional file 3 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687163openalex-snapshot
Additional file 4 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687166openalex-snapshot
Additional file 5 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687169openalex-snapshot
Additional file 6 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687172openalex-snapshot
Additional file 7 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687175openalex-snapshot
Additional file 8 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687178openalex-snapshot
Additional file 9 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26687181openalex-snapshot
Additional file 10 of Annotated genome and transcriptome of the endangered Caribbean mountainous star coral (Orbicella faveolata) using PacBio long-read sequencing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709695openalex-snapshot
Additional file 3 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709698openalex-snapshot
Additional file 4 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709701openalex-snapshot
Additional file 5 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709704openalex-snapshot
Additional file 6 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709707openalex-snapshot
Additional file 7 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709710openalex-snapshot
Additional file 8 of Evolution of myxozoan mitochondrial genomes: insights from myxobolids
inferred← citeshttps://doi.org/10.6620/zs.2023.62-13openalex-snapshot
Genetic Assessment of Fertile F1 Hybrids between Two Hercules Beetles, Dynastes maya Hardy and D. grantii Horn (Scarabaeidae).
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