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One Hundred Mitochondrial Genomes of Cicadas

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00173176openalex-snapshot

Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera

inferredcites →https://doi.org/10.1007/bf01215182openalex-snapshot

Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

inferredcites →https://doi.org/10.1007/s00239-007-9042-8openalex-snapshot

The Mitochondrial Genome of the Screamer Louse Bothriometopus (Phthiraptera: Ischnocera): Effects of Extensive Gene Rearrangements on the Evolution of the Genome

inferredcites →https://doi.org/10.1007/s00239-008-9163-8openalex-snapshot

An Evolutionary Footprint of Age-Related Natural Selection in Mitochondrial DNA

inferredcites →https://doi.org/10.1016/j.cell.2014.07.047openalex-snapshot

Sympatric Speciation in a Bacterial Endosymbiont Results in Two Genomes with the Functionality of One

inferredcites →https://doi.org/10.1016/j.cub.2017.10.008openalex-snapshot

Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas

inferredcites →https://doi.org/10.1016/j.gene.2007.11.004openalex-snapshot

Complete mitochondrial genome of the blackspot seabream, Pagellus bogaraveo (Perciformes: Sparidae), with high levels of length heteroplasmy in the WANCY region

inferredcites →https://doi.org/10.1016/j.gene.2009.06.006openalex-snapshot

Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods

inferredcites →https://doi.org/10.1016/j.tig.2003.10.012openalex-snapshot

Mitochondrial genomes: anything goes

inferredcites →https://doi.org/10.1016/j.tree.2004.10.003openalex-snapshot

Cytonuclear coevolution: the genomics of cooperation

inferredcites →https://doi.org/10.1016/j.ympev.2010.02.007openalex-snapshot

Nucleotide substitution rates for the full set of mitochondrial protein-coding genes in Coleoptera

inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot

MITOS: Improved de novo metazoan mitochondrial genome annotation

inferredcites →https://doi.org/10.1016/j.ympev.2012.10.020openalex-snapshot

Genetic aspects of mitochondrial genome evolution

inferredcites →https://doi.org/10.1016/j.ympev.2013.03.033openalex-snapshot

A comparative analysis of complete mitochondrial genomes among Hexapoda

inferredcites →https://doi.org/10.1016/s0169-5347(01)02151-6openalex-snapshot

Mitochondrial pseudogenes: evolution's misplaced witnesses

inferredcites →https://doi.org/10.1016/s0305-1978(96)00042-7openalex-snapshot

Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies

inferredcites →https://doi.org/10.1016/s0959-437x(98)80035-xopenalex-snapshot

Big trees from little genomes: mitochondrial gene order as a phylogenetic tool

inferredcites →https://doi.org/10.1038/290470a0openalex-snapshot

tRNA punctuation model of RNA processing in human mitochondria

inferredcites →https://doi.org/10.1038/nature04546openalex-snapshot

Eukaryotic evolution, changes and challenges

inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot

jModelTest 2: more models, new heuristics and parallel computing

inferredcites →https://doi.org/10.1038/s41598-017-11132-0openalex-snapshot

Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS

inferredcites →https://doi.org/10.1038/s41598-017-14703-3openalex-snapshot

Characterization of the complete mitochondrial genomes of Maiestas dorsalis and Japananus hyalinus (Hemiptera: Cicadellidae) and comparison with other Membracoidea

inferredcites →https://doi.org/10.1073/pnas.1220060110openalex-snapshot

Independent divergence of 13- and 17-y life cycles among three periodical cicada lineages

inferredcites →https://doi.org/10.1073/pnas.1409328111openalex-snapshot

Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA

inferredcites →https://doi.org/10.1073/pnas.1421386112openalex-snapshot

Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia

inferredcites →https://doi.org/10.1073/pnas.1422049112openalex-snapshot

Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes

inferredcites →https://doi.org/10.1073/pnas.1712321115openalex-snapshot

Multiple origins of interdependent endosymbiotic complexes in a genus of cicadas

inferredcites →https://doi.org/10.1073/pnas.1803245115openalex-snapshot

Recurrent symbiont recruitment from fungal parasites in cicadas

inferredcites →https://doi.org/10.1080/10635150590946808openalex-snapshot

Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards

inferredcites →https://doi.org/10.1080/10635150590947843openalex-snapshot

Evidence for Multiple Reversals of Asymmetric Mutational Constraints during the Evolution of the Mitochondrial Genome of Metazoa, and Consequences for Phylogenetic Inferences

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/aesa/87.6.651openalex-snapshot

Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers

inferredcites →https://doi.org/10.1093/bioinformatics/btt593openalex-snapshot

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/gbe/evt119openalex-snapshot

Evolution Along the Mutation Gradient in the Dynamic Mitochondrial Genome of Salamanders

inferredcites →https://doi.org/10.1093/genetics/123.4.825openalex-snapshot

Mitochondrial DNA in the bark weevils: size, structure and heteroplasmy.

inferredcites →https://doi.org/10.1093/genetics/128.2.393openalex-snapshot

Putative origin and function of the intergenic region between COI and COII of Apis mellifera L. mitochondrial DNA.

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msn198openalex-snapshot

A Comparative Analysis of Mitochondrial Genomes in Coleoptera (Arthropoda: Insecta) and Genome Descriptions of Six New Beetles

inferredcites →https://doi.org/10.1093/molbev/msp072openalex-snapshot

Characterization of 67 Mitochondrial tRNA Gene Rearrangements in the Hymenoptera Suggests That Mitochondrial tRNA Gene Position Is Selectively Neutral

inferredcites →https://doi.org/10.1093/molbev/msq009openalex-snapshot

A Generation Time Effect on the Rate of Molecular Evolution in Invertebrates

inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msw279openalex-snapshot

RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses

inferredcites →https://doi.org/10.1093/nar/27.8.1767openalex-snapshot

Animal mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkr771openalex-snapshot

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040116openalex-snapshot

Evolution of the WANCY region in amniote mitochondrial DNA.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040286openalex-snapshot

Metabolic rate and directional nucleotide substitution in animal mitochondrial DNA.

inferredcites →https://doi.org/10.1093/sysbio/syr017openalex-snapshot

Hybridization, Mitochondrial DNA Phylogeography, and Prediction of the Early Stages of Reproductive Isolation: Lessons from New Zealand Cicadas (Genus Kikihia)

inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

inferredcites →https://doi.org/10.1093/sysbio/syv069openalex-snapshot

Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini)

inferredcites →https://doi.org/10.1098/rspb.2005.3217openalex-snapshot

Population size and molecular evolution on islands

inferredcites →https://doi.org/10.1098/rspb.2017.1223openalex-snapshot

Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs

inferredcites →https://doi.org/10.1101/cshperspect.a011403openalex-snapshot

Mitochondrial Evolution

inferredcites →https://doi.org/10.1101/gr.083188.108openalex-snapshot

The single mitochondrial chromosome typical of animals has evolved into 18 minichromosomes in the human body louse, Pediculus humanus

inferredcites →https://doi.org/10.1101/gr.093138.109openalex-snapshot

Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability

inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot

Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03640.xopenalex-snapshot

Ancient hybridization and mitochondrial capture between two species of chipmunks

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05664.xopenalex-snapshot

The biogeography of mitochondrial and nuclear discordance in animals

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05684.xopenalex-snapshot

Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust

inferredcites →https://doi.org/10.1111/j.1558-5646.1990.tb03826.xopenalex-snapshot

DIFFERING LEVELS OF AMONG‐POPULATION DIVERGENCE IN THE MITOCHONDRIAL DNA OF PERIODICAL CICADAS RELATED TO HISTORICAL BIOGEOGRAPHY

inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01830.xopenalex-snapshot

LOW METABOLIC RATES IN SALAMANDERS ARE CORRELATED WITH WEAK SELECTIVE CONSTRAINTS ON MITOCHONDRIAL GENES

inferredcites →https://doi.org/10.1111/syen.12071openalex-snapshot

How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research

inferredcites →https://doi.org/10.1146/annurev-ento-011613-162007openalex-snapshot

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

inferredcites →https://doi.org/10.1146/annurev.ecolsys.37.091305.110018openalex-snapshot

Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA

inferredcites →https://doi.org/10.1146/annurev.en.40.010195.001413openalex-snapshot

The Ecology, Behavior, and Evolution of Periodical Cicadas

inferredcites →https://doi.org/10.11646/zootaxa.4424.1.1openalex-snapshot

A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification

inferredcites →https://doi.org/10.11646/zootaxa.4438.3.2openalex-snapshot

Cicada fossils (Cicadoidea: Tettigarctidae and Cicadidae) with a review of the named fossilised Cicadidae

inferredcites →https://doi.org/10.1186/1471-2148-4-25openalex-snapshot

Organization of the mitochondrial genomes of whiteflies, aphids, and psyllids (Hemiptera, Sternorrhyncha)

inferredcites →https://doi.org/10.1186/1471-2164-12-221openalex-snapshot

The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pgen.1000834openalex-snapshot

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

inferredcites →https://doi.org/10.1371/journal.pgen.1001107openalex-snapshot

Evidence of Selection upon Genomic GC-Content in Bacteria

inferredcites →https://doi.org/10.1371/journal.pgen.1001115openalex-snapshot

Evidence That Mutation Is Universally Biased towards AT in Bacteria

inferredcites →https://doi.org/10.1371/journal.pone.0032826openalex-snapshot

Accelerated Evolution of Mitochondrial but Not Nuclear Genomes of Hymenoptera: New Evidence from Crabronid Wasps

inferredcites →https://doi.org/10.1371/journal.pone.0074636openalex-snapshot

Frequency and Pattern of Heteroplasmy in the Complete Human Mitochondrial Genome

inferredcites →https://doi.org/10.1534/genetics.105.046243openalex-snapshot

Replication Origin of Mitochondrial DNA in Insects

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fgene.2012.00175openalex-snapshot

Updating Our View of Organelle Genome Nucleotide Landscape

inferredcites →https://doi.org/10.3853/j.0067-1975.57.2005.1447openalex-snapshot

An appraisal of the higher classification of cicadas (Hemiptera: Cicadoidea) with special reference to the Australian fauna

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/megataxa.17.1.2zenodo-depositor-declared

Thirteen new cicada species (Hemiptera: Cicadidae) from Thailand with the resurrection of Pomponiini Kato, 1932, a new combination, and a new tribal assignment for Muda Distant, 1897

inferred← citeshttps://doi.org/10.11646/zootaxa.4747.1.5zenodo-depositor-declared

Redefinition of the cicada tribe Hemidictyini Distant, 1905, status of the tribe Iruanini Boulard, 1993 rev. stat., and the establishment of Hovanini n. tribe and Sapantangini n. tribe (Hemiptera: Cicadidae)

inferred← citeshttps://doi.org/10.11646/zootaxa.5346.5.1zenodo-depositor-declared

Phylogeny of North America’s largest cicada radiation redefines Tibicinoides and Okanagana (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae)

inferred← citeshttps://doi.org/10.1007/s12041-022-01405-7openalex-snapshot

A time-calibrated mitogenomic phylogeny suggests that Korean Hyalessa fuscata is a bridge between Chinese and Japanese H. maculaticollis

inferred← citeshttps://doi.org/10.1038/s41598-022-24723-3openalex-snapshot

Lack of host phylogenetic structure in the gut bacterial communities of New Zealand cicadas and their interspecific hybrids

inferred← citeshttps://doi.org/10.1071/is20079openalex-snapshot

The molecular systematics and diversification of a taxonomically unstable group of Asian cicada tribes related to Cicadini Latreille, 1802 (Hemiptera : Cicadidae)

inferred← citeshttps://doi.org/10.1080/00275514.2020.1742033openalex-snapshot

Evolutionary relationships among Massospora spp. (Entomophthorales), obligate pathogens of cicadas

inferred← citeshttps://doi.org/10.1093/biolinnean/blz120openalex-snapshot

Off-target capture data, endosymbiont genes and morphology reveal a relict lineage that is sister to all other singing cicadas

inferred← citeshttps://doi.org/10.1093/g3journal/jkad224openalex-snapshot

Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae)

inferred← citeshttps://doi.org/10.1093/gbe/evac147openalex-snapshot

Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae)

inferred← citeshttps://doi.org/10.1093/jisesa/ieaa090openalex-snapshot

Comprehensive Analyses of the Complete Mitochondrial Genome of Figulus binodulus (Coleoptera: Lucanidae)

inferred← citeshttps://doi.org/10.1093/sysbio/syac043openalex-snapshot

Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera)

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlae098openalex-snapshot

Discordance between mitochondrial, nuclear, and symbiont genomes in aphid phylogenetics: who is telling the truth?

inferred← citeshttps://doi.org/10.1101/2021.08.24.457591openalex-snapshot

Host-associated microbial diversity in New Zealand cicadas uncovers elevational structure and replacement of obligate bacterial endosymbionts by Ophiocordyceps fungal pathogens

inferred← citeshttps://doi.org/10.1101/2023.12.05.570157openalex-snapshot

Heteroplasmy and tandem repeats reveal adaptation to elevation in the New World Jays (Aves: Corvidae)

inferred← citeshttps://doi.org/10.1101/2024.07.26.605304openalex-snapshot

Phylogenomics resolves the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha)

inferred← citeshttps://doi.org/10.1111/1462-2920.15829openalex-snapshot

Complex co‐evolutionary relationships between cicadas and their symbionts

inferred← citeshttps://doi.org/10.1111/cla.12474openalex-snapshot

Phylogenomics of flavobacterial insect nutritional endosymbionts with implications for Auchenorrhyncha phylogeny

inferred← citeshttps://doi.org/10.1111/syen.12613openalex-snapshot

Phylogenomics improves the phylogenetic resolution and provides strong evidence of mito‐nuclear discordance in two genera of a New Zealand cicada ( Hemiptera: Cicadidae ) species radiation

inferred← citeshttps://doi.org/10.1111/syen.12666openalex-snapshot

Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha)

inferred← citeshttps://doi.org/10.1111/zsc.12513openalex-snapshot

Extracting ‘legacy loci’ from an invertebrate sequence capture data set

inferred← citeshttps://doi.org/10.1128/aem.01373-23openalex-snapshot

Symbionts in Hodgkinia -free cicadas and their implications for co-evolution between endosymbionts and host insects

inferred← citeshttps://doi.org/10.1186/s12864-026-13106-xopenalex-snapshot

Mitochondrial genomes of Dactylogyrus wunderi (Monopisthocotyla: Dactylogyridae): structural features, codon usage patterns, and phylogenetic implications

inferred← citeshttps://doi.org/10.12688/f1000research.76068.1openalex-snapshot