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Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi

https://doi.org/10.1093/gbe/evac185
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
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aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
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RaGOO: fast and accurate reference-guided scaffolding of draft genomes
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KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences
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BlobToolKit – Interactive Quality Assessment of Genome Assemblies
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sourmash: a library for MinHash sketching of DNA
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Taxonomy of Kickxellaceae and Radiation of the Asexual Apparatus
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R: A Language and Environment for Statistical Computing
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Overview of 75 years of Smittium research, establishing a new genus for Smittium culisetae , and prospects for future revisions of the ‘Smittium’ clade
inferredcites →https://doi.org/10.3852/13-253openalex-snapshot
An eight-gene molecular phylogeny of the Kickxellomycotina, including the first phylogenetic placement of Asellariales
inferredcites →https://doi.org/10.3852/16-042openalex-snapshot
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
inferredcites →https://doi.org/10.5281/zenodo.1134477openalex-snapshot
Funannotate v1.8.1: Eukaryotic genome annotation
inferredcites →https://doi.org/10.5642/aliso.19590402.05openalex-snapshot
The Merosporangiferous Mucorales
inferredcites →https://doi.org/10.5642/aliso.19610501.05openalex-snapshot
Addenda to "The Merosporangiferous Mucorales"
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Addenda to "The Merosporangiferous Mucorales" II
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Methods Used by Dr. R. K. Benjamin, and Other Mycologists, to Isolate Zygomycetes
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The Genera Kickxella, Martensella, and Coemansia

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genomic analysis of Ancylistes closterii , an enigmatic alga parasitic fungus in the arthropod-associated Entomophthoromycotina
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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
inferred← citeshttps://doi.org/10.47371/mycosci.2025.01.001openalex-snapshot
Unguispora grylli, a new species of amphibious fungi associated with crickets (Gryllidae), transforms attachment structures of sporangiola in the host gut.
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