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Chromosome-Scale Genomes of the Flightless Caterpillar Hunter Beetles Calosoma tepidum and Calosoma wilkesii From British Columbia (Coleoptera: Carabidae)

https://doi.org/10.1093/gbe/evae247
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cpbi.57openalex-snapshot
Predicting Genes in Single Genomes with AUGUSTUS
inferredcites →https://doi.org/10.1007/978-4-431-53965-0_4openalex-snapshot
Phylogeny and Distribution of the Subfamily Carabinae
inferredcites →https://doi.org/10.1016/j.cois.2017.12.002openalex-snapshot
Beetle genomes in the 21st century: prospects, progress and priorities
inferredcites →https://doi.org/10.1016/j.gene.2005.06.028openalex-snapshot
Evolutionary history of Calosomina ground beetles (Coleoptera, Carabidae, Carabinae) of the world as deduced from sequence comparisons of the mitochondrial ND5 gene
inferredcites →https://doi.org/10.1016/j.ympev.2021.107355openalex-snapshot
Global dispersal and diversification in ground beetles of the subfamily Carabinae
inferredcites →https://doi.org/10.1038/nature01313openalex-snapshot
Loss and recovery of wings in stick insects
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41592-020-01056-5openalex-snapshot
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
inferredcites →https://doi.org/10.1038/s41592-021-01101-xopenalex-snapshot
Sensitive protein alignments at tree-of-life scale using DIAMOND
inferredcites →https://doi.org/10.1046/j.1365-3113.1999.00088.xopenalex-snapshot
Phylogeny of carabid beetles as inferred from 18S ribosomal DNA (Coleoptera: Carabidae)
inferredcites →https://doi.org/10.1093/bioinformatics/btaa025openalex-snapshot
Identifying and removing haplotypic duplication in primary genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btab705openalex-snapshot
New strategies to improve minimap2 alignment accuracy
inferredcites →https://doi.org/10.1093/bioinformatics/btac808openalex-snapshot
YaHS: yet another Hi-C scaffolding tool
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/biolinnean/blaa093openalex-snapshot
The origin of the giant ground beetleAplothorax burchellion St Helena Island
inferredcites →https://doi.org/10.1093/biolinnean/blx128openalex-snapshot
Rekindling Jeannel’s Gondwanan vision? Phylogenetics and evolution of Carabinae with a focus on Calosoma caterpillar hunter beetles
inferredcites →https://doi.org/10.1093/gbe/evab112openalex-snapshot
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution
inferredcites →https://doi.org/10.1093/gigascience/giac006openalex-snapshot
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/nar/gkac1052openalex-snapshot
UniProt: the Universal Protein Knowledgebase in 2023
inferredcites →https://doi.org/10.1093/nar/gkac998openalex-snapshot
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
inferredcites →https://doi.org/10.1093/nar/gki937openalex-snapshot
Gene identification in novel eukaryotic genomes by self-training algorithm
inferredcites →https://doi.org/10.1093/nar/gks708openalex-snapshot
Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features
inferredcites →https://doi.org/10.1093/nar/gkv227openalex-snapshot
Identification of protein coding regions in RNA transcripts
inferredcites →https://doi.org/10.1093/nargab/lqaa026openalex-snapshot
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
inferredcites →https://doi.org/10.1101/gr.278090.123openalex-snapshot
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
inferredcites →https://doi.org/10.1111/1755-0998.13160openalex-snapshot
MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
inferredcites →https://doi.org/10.1111/1755-0998.13749openalex-snapshot
First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies
inferredcites →https://doi.org/10.1111/j.1439-0469.2005.00324.xopenalex-snapshot
Phylogenetic relationships of Dalyat mirabilis Mateu, 2002, with a revised molecular phylogeny of ground beetles (Coleoptera, Carabidae)
inferredcites →https://doi.org/10.1111/j.1463-6409.2008.00359.xopenalex-snapshot
Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae)
inferredcites →https://doi.org/10.1111/syen.12403openalex-snapshot
The morphological evolution of the Adephaga (Coleoptera)
inferredcites →https://doi.org/10.1111/syen.12506openalex-snapshot
Integrative phylogenomics reveals a Permian origin of Adephaga beetles
inferredcites →https://doi.org/10.1111/syen.12508openalex-snapshot
Phylogenomic analyses clarify the pattern of evolution of Adephaga (Coleoptera) and highlight phylogenetic artefacts due to model misspecification and excessive data trimming
inferredcites →https://doi.org/10.1146/annurev-ento-020117-043348openalex-snapshot
How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?
inferredcites →https://doi.org/10.1186/s12859-021-04482-0openalex-snapshot
TSEBRA: transcript selector for BRAKER
inferredcites →https://doi.org/10.1186/s12859-023-05385-yopenalex-snapshot
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
inferredcites →https://doi.org/10.1186/s12862-022-02018-5openalex-snapshot
A second view on the evolution of flight in stick and leaf insects (Phasmatodea)
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.12688/wellcomeopenres.18658.1openalex-snapshot
Genomes on a Tree (GoaT): A versatile, scalable search engine for genomic and sequencing project metadata across the eukaryotic tree of life
inferredcites →https://doi.org/10.1534/g3.119.400908openalex-snapshot
BlobToolKit – Interactive Quality Assessment of Genome Assemblies
inferredcites →https://doi.org/10.7717/peerj.1660openalex-snapshot
AMAS: a fast tool for alignment manipulation and computing of summary statistics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.21425/fob.19.181379zenodo-depositor-declared
Climatic swings triggered incipient postglacial speciation of flightless Calosoma beetles in Western Balkan sky islands
inferred← citeshttps://doi.org/10.1093/evolinnean/kzag016openalex-snapshot
Orogeny of Ethiopian sky islands and Pliocene climate shifts promoted budding speciation and complex admixture in flightless Calosoma ground beetles
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