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HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Population genetics of wild Macaca fascicularis with low‐coverage shotgun sequencing of museum specimens
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Spatial and temporal genetic dynamics of the grasshopper Oedaleus decorus revealed by museum genomics
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Phylogeny and Distribution of the Subfamily Carabinae
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Phylogenetic relationships and evolution of the Japanese Carabinae ground beetles based on mitochondrial ND5 gene sequences
inferredcites →https://doi.org/10.1007/bf02198838openalex-snapshot
Geography-linked phylogeny of theDamaster ground beetles inferred from mitochondrial ND5 gene sequences
inferredcites →https://doi.org/10.1007/s002390010057openalex-snapshot
Formation of the Japanese Carabina Fauna Inferred from a Phylogenetic Tree of Mitochondrial ND5 Gene Sequences (Coleoptera, Carabidae)
inferredcites →https://doi.org/10.1007/s002390010243openalex-snapshot
Sympatric Convergence of the Color Pattern in the Chilean Ceroglossus Ground Beetles Inferred from Sequence Comparisons of the Mitochondrial ND5 Gene
inferredcites →https://doi.org/10.1007/s10531-018-1653-4openalex-snapshot
The status of the invertebrate fauna on the South Atlantic island of St Helena: problems, analysis, and recommendations
inferredcites →https://doi.org/10.1016/j.ajhg.2013.10.002openalex-snapshot
Pulling out the 1%: Whole-Genome Capture for the Targeted Enrichment of Ancient DNA Sequencing Libraries
inferredcites →https://doi.org/10.1016/j.earscirev.2006.01.002openalex-snapshot
A Late Cretaceous and Cenozoic reconstruction of the Southwest Pacific region: Tectonics controlled by subduction and slab rollback processes
inferredcites →https://doi.org/10.1016/j.gene.2003.10.025openalex-snapshot
Pattern of phylogenetic diversification of the Cychrini ground beetles in the world as deduced mainly from sequence comparisons of the mitochondrial genes
inferredcites →https://doi.org/10.1016/j.gene.2005.06.028openalex-snapshot
Evolutionary history of Calosomina ground beetles (Coleoptera, Carabidae, Carabinae) of the world as deduced from sequence comparisons of the mitochondrial ND5 gene
inferredcites →https://doi.org/10.1016/j.jhevol.2014.10.015openalex-snapshot
The use of museum specimens with high-throughput DNA sequencers
inferredcites →https://doi.org/10.1016/j.ympev.2005.02.015openalex-snapshot
Phylogeny and character evolution of endemic Australian carabid beetles of the genus Pamborus based on mitochondrial and nuclear gene sequences
inferredcites →https://doi.org/10.1016/j.ympev.2012.06.015openalex-snapshot
Molecular systematics and evolutionary history of the genus Carabus (Col. Carabidae)
inferredcites →https://doi.org/10.1016/j.ympev.2014.07.016openalex-snapshot
Application of RAD-based phylogenetics to complex relationships among variously related taxa in a species flock
inferredcites →https://doi.org/10.1016/j.ympev.2018.06.038openalex-snapshot
Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)
inferredcites →https://doi.org/10.1016/s1055-7903(02)00311-1openalex-snapshot
Reconstructing species phylogeny of the carabid beetles Ohomopterus using multiple nuclear DNA sequences: heterogeneous information content and the performance of simultaneous analyses
inferredcites →https://doi.org/10.1016/s1055-7903(03)00163-5openalex-snapshot
Phylogeny and evolution of Digitulati ground beetles (Coleoptera, Carabidae) inferred from mitochondrial ND5 gene sequences
inferredcites →https://doi.org/10.1017/cbo9781139103831openalex-snapshot
Journal of Researches into the Natural History and Geology of the Countries Visited during the Voyage of HMS Beagle round the World, under the Command of Capt. Fitz Roy, R.N.
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The beetle (Coleoptera) fauna of the Insect Limestone (late Eocene), Isle of Wight, southern England
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ModelFinder: fast model selection for accurate phylogenetic estimates
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The evolution and genomic basis of beetle diversity
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Structure secondaire de l’ARN 18S et phylogénie basale du genreCarabusL., 1758 (Coleoptera : Carabidae)
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Between Two Extremes: Mitochondrial DNA is neither the Panacea nor the Nemesis of Phylogenetic and Taxonomic Inference
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The Sequence Alignment/Map format and SAMtools
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adephylo : new tools for investigating the phylogenetic signal in biological traits
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mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
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PHYLUCE is a software package for the analysis of conserved genomic loci
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Phyx: phylogenetic tools for unix
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ipyrad: Interactive assembly and analysis of RADseq datasets
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The origin of the giant ground beetleAplothorax burchellion St Helena Island
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Transcriptomics illuminate the phylogenetic backbone of tiger beetles
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UFBoot2: Improving the Ultrafast Bootstrap Approximation
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A minimum reporting standard for multiple sequence alignments
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Pattern of Morphological Diversification in the Leptocarabus Ground Beetles (Coleoptera: Carabidae) as Deduced from Mitochondrial ND5 Gene and Nuclear 28S rDNA Sequences
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Incongruence of Mitochondrial and Nuclear Gene Trees in the Carabid Beetles Ohomopterus
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New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
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Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
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Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
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Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences
inferredcites →https://doi.org/10.1093/sysbio/syv058openalex-snapshot
How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards
inferredcites →https://doi.org/10.1093/sysbio/syw005openalex-snapshot
Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus:Piranga)
inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
inferredcites →https://doi.org/10.1093/sysbio/syz056openalex-snapshot
Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data
inferredcites →https://doi.org/10.1093/ve/vey016openalex-snapshot
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
inferredcites →https://doi.org/10.1098/rsbl.2016.0429openalex-snapshot
Mimics here and there, but not everywhere: Müllerian mimicry inCeroglossusground beetles?
inferredcites →https://doi.org/10.1098/rstb.2008.0119openalex-snapshot
The age and origin of the Pacific islands: a geological overview
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Accuracy, speed and error tolerance of short DNA sequence aligners
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Rewinding the molecular clock in the genus Carabus (Coleoptera: Carabidae) in light of fossil evidence and the Gondwana split: a re-analyses
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.210641.116openalex-snapshot
Centrifuge: rapid and sensitive classification of metagenomic sequences
inferredcites →https://doi.org/10.1101/gr.5681207openalex-snapshot
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1111/1755-0998.12291openalex-snapshot
Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
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Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among H ymenoptera
inferredcites →https://doi.org/10.1111/1755-0998.12466openalex-snapshot
Sequence capture of ultraconserved elements from bird museum specimens
inferredcites →https://doi.org/10.1111/1755-0998.12566openalex-snapshot
RAD cap: sequence capture of dual‐digest RAD seq libraries with identifiable duplicates and reduced missing data
inferredcites →https://doi.org/10.1111/1755-0998.12655openalex-snapshot
Phylogenomics using formalin‐fixed and 100+ year‐old intractable natural history specimens
inferredcites →https://doi.org/10.1111/1755-0998.13155openalex-snapshot
A linked‐read approach to museomics: Higher quality de novo genome assemblies from degraded tissues
inferredcites →https://doi.org/10.1111/1755-0998.13160openalex-snapshot
MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics
inferredcites →https://doi.org/10.1111/1755-0998.13167openalex-snapshot
Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland
inferredcites →https://doi.org/10.1111/2041-210x.12151openalex-snapshot
Congruence test of molecular clock calibration hypotheses based on B ayes factor comparisons
inferredcites →https://doi.org/10.1111/2041-210x.12785openalex-snapshot
Hy RAD ‐X, a versatile method combining exome capture and RAD sequencing to extract genomic information from ancient DNA
inferredcites →https://doi.org/10.1111/2041-210x.13169openalex-snapshot
Cost‐efficient high throughput capture of museum arthropod specimen DNA using PCR ‐generated baits
inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00277.xopenalex-snapshot
Phylogeny and life-history evolution in Carabus (subtribe Carabina: Coleoptera, Carabidae) based on sequences of two nuclear genes
inferredcites →https://doi.org/10.1111/j.1096-3642.2012.00866.xopenalex-snapshot
Molecular systematics and evolution of the subgenusMesocarabusThomson, 1875 (Coleoptera: Carabidae:Carabus), based on mitochondrial and nuclear DNA
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05004.xopenalex-snapshot
Reticulate evolution of the Daphnia pulex complex as revealed by nuclear markers
inferredcites →https://doi.org/10.1111/j.1440-6055.2006.00495.xopenalex-snapshot
Four new species of the Australian Pamborus Latreille (Coleoptera, Carabidae) carabid beetles
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Unlocking the vault: next‐generation museum population genomics
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Targeted capture in evolutionary and ecological genomics
inferredcites →https://doi.org/10.1111/syen.12301openalex-snapshot
Museum specimens provide phylogenomic data to resolve relationships of sack‐bearer moths ( L epidoptera, M imallonoidea, M imallonidae)
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Phylogenomic analysis of the beetle suborder Adephaga with comparison of tailored and generalized ultraconserved element probe performance
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Museomics reveals extensive cryptic diversity of Australian prionine longhorn beetles with implications for their classification and conservation
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Causes and analytical impacts of missing data in RADseq phylogenetics: Insights from an African frog (Afrixalus)
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Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation
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Improving ancient DNA read mapping against modern reference genomes
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Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
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Anchored phylogenomics illuminates the skipper butterfly tree of life
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FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies
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Work ability and associated factors of Brazilian technical-administrative workers in education
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AdapterRemoval v2: rapid adapter trimming, identification, and read merging
inferredcites →https://doi.org/10.1266/ggs.75.335openalex-snapshot
Differentiation within the genus Leptocarabus(excl. L. kurilensis) in the Japanese Islands as deduced from mitochondrial ND5 gene sequences(Coleoptera, Carabidae).
inferredcites →https://doi.org/10.1266/ggs.78.37openalex-snapshot
Phylogenetic relationships in the division Lipastromorphi(Coleoptera, Carabidae) of the world as deduced from mitochondrial ND5 gene sequences.
inferredcites →https://doi.org/10.1371/journal.pone.0033394openalex-snapshot
Inferring Phylogenies from RAD Sequence Data
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1371/journal.pone.0069189openalex-snapshot
Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
inferredcites →https://doi.org/10.1371/journal.pone.0096793openalex-snapshot
Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics
inferredcites →https://doi.org/10.1371/journal.pone.0151651openalex-snapshot
Hybridization Capture Using RAD Probes (hyRAD), a New Tool for Performing Genomic Analyses on Collection Specimens
inferredcites →https://doi.org/10.1371/journal.pone.0161531openalex-snapshot
Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens
inferredcites →https://doi.org/10.1371/journal.pone.0197433openalex-snapshot
So many genes, so little time: A practical approach to divergence-time estimation in the genomic era
inferredcites →https://doi.org/10.1371/journal.pone.0256679openalex-snapshot
Rewinding the molecular clock in the genus Carabus (Coleoptera: Carabidae) in light of fossil evidence and the Gondwana split: A reanalysis
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1534/genetics.115.183665openalex-snapshot
RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
inferredcites →https://doi.org/10.2144/000114039openalex-snapshot
Capturing Protein-Coding Genes Across Highly Divergent Species
inferredcites →https://doi.org/10.2183/pjab.94.024openalex-snapshot
Evolutionary history of carabid ground beetles with special reference to morphological variations of the hind-wings
inferredcites →https://doi.org/10.2307/1943013openalex-snapshot
The Evolution of Flightlessness in Insects
inferredcites →https://doi.org/10.2307/2992506openalex-snapshot
Fossils, Topologies, Missing Data, and the Higher Level Phylogeny of Eutherian Mammals
inferredcites →https://doi.org/10.2741/4522openalex-snapshot
MtDNA The small workhorse of evolutionary studies
inferredcites →https://doi.org/10.3390/d11070106openalex-snapshot
The Prevalence of Single-Specimen/Locality Species in Insect Taxonomy: An Empirical Analysis
inferredcites →https://doi.org/10.3406/bsef.1988.17562openalex-snapshot
Les Calosomes fossiles de l'Oligocène du sud-est de la France [Col. Carabidae]
inferredcites →https://doi.org/10.3406/bsef.1998.17421openalex-snapshot
Trois fossiles remarquablement conservés du Miocène de France, appartenant aux genres Carabus L. et Ledouxnebria nov. (Coleoptera, Carabidae et Nebriidae)
inferredcites →https://doi.org/10.5860/choice.42-0948openalex-snapshot
Molecular phylogeny and evolution of carabid ground beetles
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Journal of researches into the natural history and geology of the countries visited during the voyage of H.M.S. Beagle round the world : under the command of Capt. Fitz Roy, R.N
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AMAS: a fast tool for alignment manipulation and computing of summary statistics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Climatic swings triggered incipient postglacial speciation of flightless Calosoma beetles in Western Balkan sky islands
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Population genetic structure reveals asymmetric hybridization between Pinus pumila and P. parviflora var. Pentaphylla in the Hakkoda Mountains, Northern Japan
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inferred← citeshttps://doi.org/10.1093/gbe/evae247openalex-snapshot
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inferred← citeshttps://doi.org/10.14411/eje.2026.008openalex-snapshot
Optimization of DNA extraction for insect museomics substantially increases DNA yield
inferred← citeshttps://doi.org/10.17520/biods.2022140openalex-snapshot
Taxonomic yearbook of extant Coleoptera in 2021
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2190050/v1openalex-snapshot
Molecular phylogeny of mega-diverse Carabus attests late Miocene evolution of alpine environments in the Himalayan-Tibetan Orogen
inferred← citeshttps://doi.org/10.24072/pcjournal.445openalex-snapshot
Museomics of Carabus giant ground beetles shows an Oligocene origin and in situ alpine diversification
inferred← citeshttps://doi.org/10.3389/fevo.2022.910084openalex-snapshot
Life-history traits drive spatial genetic structuring in Dinaric cave spiders
inferred← citeshttps://doi.org/10.3389/fevo.2022.943361openalex-snapshot
Predictors of sequence capture in a large-scale anchored phylogenomics project
inferred← citeshttps://doi.org/10.35929/rsz.0167openalex-snapshot
Molecular phylogeny of the long-horned beetle genus Cerambyx Linnaeus, 1758 with a molecular assessment of morphologically distinctive individuals of Cerambyx miles Bonelli, 1812 (Coleoptera: Cerambycidae: Cerambycinae: Cerambycini)
inferred← citeshttps://doi.org/10.3897/zookeys.1146.96099openalex-snapshot
The identity of Argyria lacteella (Fabricius, 1794) (Lepidoptera, Pyraloidea, Crambinae), synonyms, and related species revealed by morphology and DNA capture in type specimens
inferred← citeshttps://doi.org/10.64898/2026.05.09.724036openalex-snapshot
A new method based on genome alignments provides a highly resolutive target enrichment set for weevils (Coleoptera, Curculionoidea)
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