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Proteomics Reveals Plastid- and Periplastid-Targeted Proteins in the Chlorarachniophyte Alga Bigelowiella natans
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Nucleomorph genomes: structure, function, origin and evolution
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Transit peptide diversity and divergence: A global analysis of plastid targeting signals
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Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence
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The Chloroplast Protein Import Machinery: A Review
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The Chloroplast Protein Import Machinery: A Review
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The Origin of Chlorarachniophyte Plastids, as Inferred from Phylogenetic Comparisons of Amino Acid Sequences of EF-Tu
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Protein Targeting into the Complex Plastid of Cryptophytes
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Wheat FKBP73 functions in vitro as a molecular chaperone independently of its peptidyl prolyl cis - trans isomerase activity
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Functional characterization of isolated plastids from two marine diatoms
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Gene expression, cellular localisation and function of glutamine synthetase isozymes in wheat (Triticum aestivum L.)
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The roles of chloroplast proteases in the biogenesis and maintenance of photosystem II
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Protein targeting to the chloroplasts of photosynthetic eukaryotes: getting there is half the fun
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The Cdc48 machine in endoplasmic reticulum associated protein degradation
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The Puzzle of Plastid Evolution
inferredcites →https://doi.org/10.1016/j.febslet.2006.05.054openalex-snapshot
Profound redox sensitivity of peptidyl‐prolyl isomerase activity in Arabidopsis thylakoid lumen
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FLU, a negative feedback regulator of tetrapyrrole biosynthesis, is physically linked to the final steps of the Mg++‐branch of this pathway
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Improved Prediction of Signal Peptides: SignalP 3.0
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Exploring the Mitochondrial Proteome of the Ciliate Protozoon Tetrahymena thermophila: Direct Analysis by Tandem Mass Spectrometry
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Shotgun proteomic analysis of the unicellular alga Ostreococcus tauri
inferredcites →https://doi.org/10.1016/j.pbi.2004.03.004openalex-snapshot
Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside
inferredcites →https://doi.org/10.1016/j.pbi.2004.09.005openalex-snapshot
Plant organelle positioning
inferredcites →https://doi.org/10.1016/j.pbi.2008.03.009openalex-snapshot
Biochemical genetics of nucleotide sugar interconversion reactions
inferredcites →https://doi.org/10.1016/j.phytochem.2010.03.022openalex-snapshot
Redox regulation of chlorophyll biosynthesis
inferredcites →https://doi.org/10.1016/j.plaphy.2010.05.002openalex-snapshot
A thylakoid-localised FK506-binding protein in wheat may be linked to chloroplast biogenesis
inferredcites →https://doi.org/10.1016/j.plipres.2009.10.003openalex-snapshot
Chloroplast proteomics highlights the subcellular compartmentation of lipid metabolism
inferredcites →https://doi.org/10.1016/j.tibs.2010.01.002openalex-snapshot
Multitasking with ubiquitin through multivalent interactions
inferredcites →https://doi.org/10.1016/j.tibs.2011.06.001openalex-snapshot
Cdc48: a power machine in protein degradation
inferredcites →https://doi.org/10.1016/s0014-5793(02)03180-0openalex-snapshot
Structure and function of a protein folding machine: the eukaryotic cytosolic chaperonin CCT
inferredcites →https://doi.org/10.1016/s0022-2836(03)00374-7openalex-snapshot
Novel Ubiquitin Fusion Proteins: Ribosomal Protein P1 and Actin
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
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PredSL: A Tool for the N-Terminal Sequence-Based Prediction of Protein Subcellular Localization
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Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
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A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry
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The highly reduced genome of an enslaved algal nucleus
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A photosynthetic alveolate closely related to apicomplexan parasites
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An ancient light-harvesting protein is critical for the regulation of algal photosynthesis
inferredcites →https://doi.org/10.1038/nature11681openalex-snapshot
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
inferredcites →https://doi.org/10.1038/nprot.2007.131openalex-snapshot
Locating proteins in the cell using TargetP, SignalP and related tools
inferredcites →https://doi.org/10.1038/nrg1271openalex-snapshot
Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes
inferredcites →https://doi.org/10.1038/nrm2767openalex-snapshot
Ubiquitin-binding domains — from structures to functions
inferredcites →https://doi.org/10.1073/pnas.0600707103openalex-snapshot
Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature’s smallest nucleus
inferredcites →https://doi.org/10.1073/pnas.0707419104openalex-snapshot
Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
inferredcites →https://doi.org/10.1073/pnas.0902578106openalex-snapshot
Protein targeting into secondary plastids of chlorarachniophytes
inferredcites →https://doi.org/10.1073/pnas.1004699107openalex-snapshot
LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis
inferredcites →https://doi.org/10.1073/pnas.1230951100openalex-snapshot
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
inferredcites →https://doi.org/10.1073/pnas.221252798openalex-snapshot
FLU: A negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.91.9.3690openalex-snapshot
Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga.
inferredcites →https://doi.org/10.1074/jbc.m108575200openalex-snapshot
Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana
inferredcites →https://doi.org/10.1074/jbc.m109.012831openalex-snapshot
Interaction of Actin and the Chloroplast Protein Import Apparatus
inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot
A Rapid Bootstrap Algorithm for the RAxML Web Servers
inferredcites →https://doi.org/10.1093/bioinformatics/18.2.298openalex-snapshot
Extensive feature detection of N-terminal protein sorting signals
inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot
Gene prediction with a hidden Markov model and a new intron submodel
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/gbe/evq082openalex-snapshot
Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set
inferredcites →https://doi.org/10.1093/gbe/evr031openalex-snapshot
In Silico and In Vivo Investigations of Proteins of a Minimized Eukaryotic Cytoplasm
inferredcites →https://doi.org/10.1093/gbe/evr100openalex-snapshot
Red and Problematic Green Phylogenetic Signals among Thousands of Nuclear Genes from the Photosynthetic and Apicomplexa-Related Chromera velia
inferredcites →https://doi.org/10.1093/jb/mvi028openalex-snapshot
p97/p47-Mediated Biogenesis of Golgi and ER
inferredcites →https://doi.org/10.1093/molbev/msl129openalex-snapshot
The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts
inferredcites →https://doi.org/10.1093/molbev/msm008openalex-snapshot
Der1-mediated Preprotein Import into the Periplastid Compartment of Chromalveolates?
inferredcites →https://doi.org/10.1093/molbev/msp079openalex-snapshot
ERAD-Derived Preprotein Transport across the Second Outermost Plastid Membrane of Diatoms
inferredcites →https://doi.org/10.1093/molbev/msq038openalex-snapshot
Characterization of Periplastidal Compartment–Targeting Signals in Chlorarachniophytes
inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
inferredcites →https://doi.org/10.1093/mp/ssp108openalex-snapshot
Intracellular Metabolite Transporters in Plants
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkr408openalex-snapshot
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026246openalex-snapshot
Origin and Evolution of Eukaryotic Chaperonins: Phylogenetic Evidence for Ancient Duplications in CCT Genes
inferredcites →https://doi.org/10.1104/pp.106.092536openalex-snapshot
Tracing the Evolution of the Light-Harvesting Antennae in Chlorophyll a / b -Containing Organisms
inferredcites →https://doi.org/10.1105/tpc.010304openalex-snapshot
Central Functions of the Lumenal and Peripheral Thylakoid Proteome of Arabidopsis Determined by Experimentation and Genome-Wide Prediction
inferredcites →https://doi.org/10.1105/tpc.12.1.53openalex-snapshot
14-3-3 Proteins Form a Guidance Complex with Chloroplast Precursor Proteins in Plants
inferredcites →https://doi.org/10.1110/ps.8.5.978openalex-snapshot
ChloroP, a neural network‐based method for predicting chloroplast transit peptides and their cleavage sites
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PPIase activities and interaction partners of FK506‐binding proteins in the wheat thylakoid
inferredcites →https://doi.org/10.1111/j.1529-8817.2008.00513.xopenalex-snapshot
TRANSIENT TRANSFORMATION OF A CHLORARACHNIOPHYTE ALGA, LOTHARELLA AMOEBIFORMIS (CHLORARACHNIOPHYCEAE), WITH uidA AND egfp REPORTER GENES1
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Plastids and Protein Targeting1
inferredcites →https://doi.org/10.1111/j.1550-7408.2004.tb00288.xopenalex-snapshot
Plastid‐Targeting Peptides from the Chlorarachniophyte Bigelowiella natans
inferredcites →https://doi.org/10.1111/j.1742-4658.2009.06874.xopenalex-snapshot
Protein transport in organelles: The composition, function and regulation of the Tic complex in chloroplast protein import
inferredcites →https://doi.org/10.1126/science.1078599openalex-snapshot
Dissecting Apicoplast Targeting in the Malaria Parasite Plasmodium falciparum
inferredcites →https://doi.org/10.1128/ec.05264-11openalex-snapshot
Genome-Based Reconstruction of the Protein Import Machinery in the Secondary Plastid of a Chlorarachniophyte Alga
inferredcites →https://doi.org/10.1146/annurev-arplant-042110-103903openalex-snapshot
Connecting the Plastid: Transporters of the Plastid Envelope and Their Role in Linking Plastidial with Cytosolic Metabolism
inferredcites →https://doi.org/10.1146/annurev-arplant-042809-112222openalex-snapshot
Protein Transport into Chloroplasts
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134809openalex-snapshot
Nucleomorph Genomes
inferredcites →https://doi.org/10.1146/annurev.arplant.57.032905.105448openalex-snapshot
Tetrapyrrole Biosynthesis in Higher Plants
inferredcites →https://doi.org/10.1146/annurev.biochem.78.082307.091526openalex-snapshot
Regulation and Cellular Roles of Ubiquitin-Specific Deubiquitinating Enzymes
inferredcites →https://doi.org/10.1146/annurev.genet.41.110306.130134openalex-snapshot
The Origin and Establishment of the Plastid in Algae and Plants
inferredcites →https://doi.org/10.1186/1471-2148-7-43openalex-snapshot
Tic62: a protein family from metabolism to protein translocation
inferredcites →https://doi.org/10.1371/journal.pone.0001426openalex-snapshot
A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis
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Transport of nuclear-encoded proteins into secondarily evolved plastids
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1080/00318884.2021.1941567zenodo-depositor-declared
Growth and grazing of the chlorarachniophyte Bigelowiella natans (Chlorarachniophyceae) on the marine cyanobacterium Synechococcus
inferred← citeshttps://doi.org/10.1002/9781118930458.ch37openalex-snapshot
The Application of Algae for Cosmeceuticals in the Omics Age
inferred← citeshttps://doi.org/10.1007/978-3-031-57446-7_2openalex-snapshot
Complex Plastids Across the Eukaryotes: An Overview of Inherited and Convergently Evolved Characters
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The Extent, Role, and Timing of Endosymbiotic Gene Transfer in Plastids
inferred← citeshttps://doi.org/10.1007/978-3-319-41448-5_4openalex-snapshot
Plant Structure and Specificity – Challenges and Sample Preparation Considerations for Proteomics
inferred← citeshttps://doi.org/10.1007/978-3-662-65712-6_5openalex-snapshot
Algae from Secondary Endosymbiosis
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Turning points in the evolution of peroxidase–catalase superfamily: molecular phylogeny of hybrid heme peroxidases
inferred← citeshttps://doi.org/10.1007/s00709-017-1147-3openalex-snapshot
Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences
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Chlorarachniophytes With Complex Secondary Plastids of Green Algal Origin
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Chlorophylls c—Occurrence, synthesis, properties, photosynthetic and evolutionary significance
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FtsZ in chloroplast division: structure, function and evolution
inferred← citeshttps://doi.org/10.1016/j.jplph.2017.05.019openalex-snapshot
Evolution and regulation of Bigelowiella natans light-harvesting antenna system
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Functional proteomics of light-harvesting complex proteins under varying light-conditions in diatoms
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Assessing the bacterial contribution to the plastid proteome
inferred← citeshttps://doi.org/10.1042/bst20170304openalex-snapshot
The evolution of the photoprotective antenna proteins in oxygenic photosynthetic eukaryotes
inferred← citeshttps://doi.org/10.1073/pnas.1421374112openalex-snapshot
Genomic perspectives on the birth and spread of plastids
inferred← citeshttps://doi.org/10.1093/gbe/evv096openalex-snapshot
Nucleomorph Genome Sequences of Two Chlorarachniophytes, Amorphochlora amoebiformis and Lotharella vacuolata
inferred← citeshttps://doi.org/10.1093/gbe/evy156openalex-snapshot
Iron–Sulfur Cluster Biosynthesis in Algae with Complex Plastids
inferred← citeshttps://doi.org/10.1093/gbe/evz123openalex-snapshot
Subcellular Compartments Interplay for Carbon and Nitrogen Allocation in Chromera velia and Vitrella brassicaformis
inferred← citeshttps://doi.org/10.1093/jxb/erac290openalex-snapshot
N-terminal modifications, the associated processing machinery, and their evolution in plastid-containing organisms
inferred← citeshttps://doi.org/10.1093/plphys/kiac173openalex-snapshot
Tracking N-terminal protein processing from the Golgi to the chromatophore of a rhizarian amoeba
inferred← citeshttps://doi.org/10.1101/573709openalex-snapshot
Proteome of the secondary plastid of Euglena gracilis reveals metabolic quirks and colourful history
inferred← citeshttps://doi.org/10.1111/nph.16237openalex-snapshot
Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid
inferred← citeshttps://doi.org/10.1146/annurev-arplant-050718-095841openalex-snapshot
Comparative and Functional Algal Genomics
inferred← citeshttps://doi.org/10.1186/s12870-015-0662-7openalex-snapshot
Prospective function of FtsZ proteins in the secondary plastid of chlorarachniophyte algae
inferred← citeshttps://doi.org/10.1186/s13059-022-02639-5openalex-snapshot
The chromatin organization of a chlorarachniophyte nucleomorph genome
inferred← citeshttps://doi.org/10.1186/s13062-016-0119-4openalex-snapshot
Conservation and divergence of the histone code in nucleomorphs
inferred← citeshttps://doi.org/10.1186/s40168-019-0768-5openalex-snapshot
Diversity, evolution, and classification of virophages uncovered through global metagenomics
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Nucleomorph: A Fascinating Remnant of Endosymbiosis
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Bioengineering of Microalgae: Recent Advances, Perspectives, and Regulatory Challenges for Industrial Application
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