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Proteome of the secondary plastid of Euglena gracilis reveals metabolic quirks and colourful history

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1873-3468.12659openalex-snapshot

Glucan synthase‐like 2 is indispensable for paramylon synthesis in Euglena gracilis

inferredcites →https://doi.org/10.1002/bies.20638openalex-snapshot

Transit peptide diversity and divergence: A global analysis of plastid targeting signals

inferredcites →https://doi.org/10.1002/j.1460-2075.1991.tb07804.xopenalex-snapshot

Short leader sequences may be transferred from small RNAs to pre‐mature mRNAs by trans‐splicing in Euglena.

inferredcites →https://doi.org/10.1006/bbrc.2000.3702openalex-snapshot

Protein Translocation within Chloroplast Is Similar in Euglena and Higher Plants

inferredcites →https://doi.org/10.1007/978-0-387-78518-9_14openalex-snapshot

Biosynthesis of Chlorophyll and Barteriochlorophyll

inferredcites →https://doi.org/10.1007/978-3-319-32669-6_13-1openalex-snapshot

Euglenida

inferredcites →https://doi.org/10.1007/978-3-319-54910-1openalex-snapshot

Euglena: Biochemistry, Cell and Molecular Biology

inferredcites →https://doi.org/10.1007/978-3-319-54910-1_5openalex-snapshot

Biochemistry and Physiology of Vitamins in Euglena

inferredcites →https://doi.org/10.1007/s002390010210openalex-snapshot

Dinoflagellate Nuclear SSU rRNA Phylogeny Suggests Multiple Plastid Losses and Replacements

inferredcites →https://doi.org/10.1007/s00294-009-0256-8openalex-snapshot

Transcriptome analysis of the Euglena gracilis plastid chromosome

inferredcites →https://doi.org/10.1007/s00294-011-0339-1openalex-snapshot

The chloroplast proteome: a survey from the Chlamydomonas reinhardtii perspective with a focus on distinctive features

inferredcites →https://doi.org/10.1007/s002940000174openalex-snapshot

Chloroplast transformation in Euglena gracilis: splicing of a group III twintron transcribed from a transgenic psbK operon

inferredcites →https://doi.org/10.1016/0003-9861(60)90501-4openalex-snapshot

The carotenoids of the flagellated alga, Euglena gracilis

inferredcites →https://doi.org/10.1016/0003-9861(74)90014-9openalex-snapshot

Localization of the reaction site of cytochrome 552 in chloroplasts from Euglena gracilis

inferredcites →https://doi.org/10.1016/0005-2760(89)90110-0openalex-snapshot

The role of mitochondria in sulfolipid biosynthesis by Euglena chloroplasts

inferredcites →https://doi.org/10.1016/0022-2836(82)90515-0openalex-snapshot

A simple method for displaying the hydropathic character of a protein

inferredcites →https://doi.org/10.1016/0022-2836(91)90721-hopenalex-snapshot

Influence of proline residues on protein conformation

inferredcites →https://doi.org/10.1016/0031-9422(91)80070-hopenalex-snapshot

Phylloquinone (Vitamin K1) biosynthesis inEuglena gracilis strain Z

inferredcites →https://doi.org/10.1016/0304-4211(78)90103-7openalex-snapshot

Biosynthesis of galactolipids in Euglena gracilis: I, incorporation of UDP galactose into galactosyldiglycerides

inferredcites →https://doi.org/10.1016/j.bbamcr.2012.05.029openalex-snapshot

A reevaluation of dual-targeting of proteins to mitochondria and chloroplasts

inferredcites →https://doi.org/10.1016/j.bbamcr.2012.05.030openalex-snapshot

Protein sorting in complex plastids

inferredcites →https://doi.org/10.1016/j.cub.2014.04.033openalex-snapshot

A SUF Fe-S Cluster Biogenesis System in the Mitochondrion-Related Organelles of the Anaerobic Protist Pygsuia

inferredcites →https://doi.org/10.1016/j.cub.2015.04.033openalex-snapshot

Protein Import and the Origin of Red Complex Plastids

inferredcites →https://doi.org/10.1016/j.cub.2016.03.053openalex-snapshot

A Eukaryote without a Mitochondrial Organelle

inferredcites →https://doi.org/10.1016/j.ejcb.2015.05.008openalex-snapshot

Protein import into complex plastids: Cellular organization of higher complexity

inferredcites →https://doi.org/10.1016/j.molp.2016.04.014openalex-snapshot

Once upon a Time – Chloroplast Protein Import Research from Infancy to Future Challenges

inferredcites →https://doi.org/10.1016/j.plantsci.2011.07.018openalex-snapshot

Isoprenoid biosynthesis in eukaryotic phototrophs: A spotlight on algae

inferredcites →https://doi.org/10.1016/j.protis.2005.09.001openalex-snapshot

A Plastid in the Making: Evidence for a Second Primary Endosymbiosis

inferredcites →https://doi.org/10.1016/j.protis.2010.07.001openalex-snapshot

Green-colored Plastids in the Dinoflagellate Genus Lepidodinium are of Core Chlorophyte Origin

inferredcites →https://doi.org/10.1016/j.tcb.2018.06.007openalex-snapshot

Rab GTPase Function in Endosome and Lysosome Biogenesis

inferredcites →https://doi.org/10.1016/j.tim.2004.04.001openalex-snapshot

Did trypanosomatid parasites have photosynthetic ancestors?

inferredcites →https://doi.org/10.1016/j.tplants.2007.03.011openalex-snapshot

Shopping for plastids

inferredcites →https://doi.org/10.1016/j.tplants.2010.06.002openalex-snapshot

Redox extends its regulatory reach to chloroplast protein import

inferredcites →https://doi.org/10.1016/j.tplants.2013.04.003openalex-snapshot

Transit peptide design and plastid import regulation

inferredcites →https://doi.org/10.1016/j.tplants.2013.09.006openalex-snapshot

Chlamydia, cyanobiont, or host: who was on top in the ménage à trois?

inferredcites →https://doi.org/10.1016/j.tplants.2013.10.005openalex-snapshot

Tracing the primordial Chlamydiae: extinct parasites of plants?

inferredcites →https://doi.org/10.1016/s0005-2728(00)00102-xopenalex-snapshot

Oxidative phosphorylation supported by an alternative respiratory pathway in mitochondria from Euglena

inferredcites →https://doi.org/10.1016/s0168-9525(98)01494-2openalex-snapshot

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes

inferredcites →https://doi.org/10.1016/s0962-8924(00)01833-xopenalex-snapshot

Chloroplast transit peptides: structure, function and evolution

inferredcites →https://doi.org/10.1021/bi300947aopenalex-snapshot

Mutational Analysis of Sulfite Reductase Hemoprotein Reveals the Mechanism for Coordinated Electron and Proton Transfer

inferredcites →https://doi.org/10.1021/np049892xopenalex-snapshot

The Methylerythritol Phosphate Pathway Contributes to Carotenoid But Not Phytol Biosynthesis in Euglena gracilis

inferredcites →https://doi.org/10.1021/pr300952gopenalex-snapshot

Construction of Plastid Reference Proteomes for Maize and Arabidopsis and Evaluation of Their Orthologous Relationships; The Concept of Orthoproteomics

inferredcites →https://doi.org/10.1023/a:1008105416065openalex-snapshot

Paramylon (β-1,3-glucan) content in wild type and WZSL mutant of Euglena gracilis. Effects of growth conditions

inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

inferredcites →https://doi.org/10.1038/ncomms6764openalex-snapshot

The evolution of photosynthesis in chromist algae through serial endosymbioses

inferredcites →https://doi.org/10.1038/ncomms7421openalex-snapshot

Plastid establishment did not require a chlamydial partner

inferredcites →https://doi.org/10.1038/nmeth.1701openalex-snapshot

SignalP 4.0: discriminating signal peptides from transmembrane regions

inferredcites →https://doi.org/10.1038/nmeth.3901openalex-snapshot

The Perseus computational platform for comprehensive analysis of (prote)omics data

inferredcites →https://doi.org/10.1038/nrg2386openalex-snapshot

Horizontal gene transfer in eukaryotic evolution

inferredcites →https://doi.org/10.1038/s41586-018-0713-yopenalex-snapshot

TIC236 links the outer and inner membrane translocons of the chloroplast

inferredcites →https://doi.org/10.1038/s41598-017-18805-wopenalex-snapshot

Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids

inferredcites →https://doi.org/10.1038/s41598-018-33663-wopenalex-snapshot

Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida

inferredcites →https://doi.org/10.1038/s41598-018-35389-1openalex-snapshot

Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses

inferredcites →https://doi.org/10.1038/srep00955openalex-snapshot

Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes

inferredcites →https://doi.org/10.1039/c5mb00319aopenalex-snapshot

The transcriptome of Euglena gracilis reveals unexpected metabolic capabilities for carbohydrate and natural product biochemistry

inferredcites →https://doi.org/10.1042/bj2530533openalex-snapshot

A sulphate metabolizing centre in Euglena mitochondria

inferredcites →https://doi.org/10.1042/bj3330381openalex-snapshot

Distribution of the mevalonate and glyceraldehyde phosphate/pyruvate pathways for isoprenoid biosynthesis in unicellular algae and the cyanobacterium Synechocystis PCC 6714

inferredcites →https://doi.org/10.1073/pnas.0504682102openalex-snapshot

Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana

inferredcites →https://doi.org/10.1073/pnas.1116067109openalex-snapshot

Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis

inferredcites →https://doi.org/10.1073/pnas.1421374112openalex-snapshot

Genomic perspectives on the birth and spread of plastids

inferredcites →https://doi.org/10.1073/pnas.1421380112openalex-snapshot

Integration of plastids with their hosts: Lessons learned from dinoflagellates

inferredcites →https://doi.org/10.1073/pnas.1608016113openalex-snapshot

Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora

inferredcites →https://doi.org/10.1073/pnas.240454797openalex-snapshot

Isoprenoid biosynthesis: The evolution of two ancient and distinct pathways across genomes

inferredcites →https://doi.org/10.1074/jbc.274.1.457openalex-snapshot

Topology of Euglena Chloroplast Protein Precursors within Endoplasmic Reticulum to Golgi to Chloroplast Transport Vesicles

inferredcites →https://doi.org/10.1078/0932-4739-00842openalex-snapshot

Character evolution in heterotrophic euglenids

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

inferredcites →https://doi.org/10.1093/gbe/evq074openalex-snapshot

ERAD Components in Organisms with Complex Red Plastids Suggest Recruitment of a Preexisting Protein Transport Pathway for the Periplastid Membrane

inferredcites →https://doi.org/10.1093/gbe/evr029openalex-snapshot

Sequence Evidence for the Presence of Two Tetrapyrrole Pathways in Euglena gracilis

inferredcites →https://doi.org/10.1093/gbe/evs115openalex-snapshot

Proteomics Reveals Plastid- and Periplastid-Targeted Proteins in the Chlorarachniophyte Alga Bigelowiella natans

inferredcites →https://doi.org/10.1093/gbe/evv095openalex-snapshot

Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes

inferredcites →https://doi.org/10.1093/gbe/evv229openalex-snapshot

Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis

inferredcites →https://doi.org/10.1093/jxb/erj023openalex-snapshot

The novel cytochrome c6 of chloroplasts: a case of evolutionary bricolage?

inferredcites →https://doi.org/10.1093/molbev/msi118openalex-snapshot

Tertiary Endosymbiosis Driven Genome Evolution in Dinoflagellate Algae

inferredcites →https://doi.org/10.1093/molbev/msm008openalex-snapshot

Der1-mediated Preprotein Import into the Periplastid Compartment of Chromalveolates?

inferredcites →https://doi.org/10.1093/molbev/msn285openalex-snapshot

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

inferredcites →https://doi.org/10.1093/molbev/msp079openalex-snapshot

ERAD-Derived Preprotein Transport across the Second Outermost Plastid Membrane of Diatoms

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msw103openalex-snapshot

Novel Hydrogenosomes in the Microaerophilic Jakobid Stygiella incarcerata

inferredcites →https://doi.org/10.1093/molbev/msy121openalex-snapshot

Secondary Plastids of Euglenids and Chlorarachniophytes Function with a Mix of Genes of Red and Green Algal Ancestry

inferredcites →https://doi.org/10.1093/nar/21.15.3537openalex-snapshot

Complete sequence ofEuglena gracilischloroplast DNA

inferredcites →https://doi.org/10.1093/nar/22.25.5737openalex-snapshot

Characterization of the unique intron - exon junctions of Euglena gene(s) encoding the polyprotein precursor to the light-harvesting chlorophyll a/b binding protein of photosystem II

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

inferredcites →https://doi.org/10.1093/nar/gkh378openalex-snapshot

PrediSi: prediction of signal peptides and their cleavage positions

inferredcites →https://doi.org/10.1093/nar/gki408openalex-snapshot

The HHpred interactive server for protein homology detection and structure prediction

inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot

KAAS: an automatic genome annotation and pathway reconstruction server

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026395openalex-snapshot

Enolase from Trypanosoma brucei, from the Amitochondriate Protist Mastigamoeba balamuthi, and from the Chloroplast and Cytosol of Euglena gracilis: Pieces in the Evolutionary Puzzle of the Eukaryotic Glycolytic Pathway

inferredcites →https://doi.org/10.1104/pp.108.130070openalex-snapshot

Tyrosine and Phenylalanine Are Synthesized within the Plastids in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.45.4.531openalex-snapshot

Comparative studies of biosynthesis of galactolipids in Euglena gracilis strain Z.

inferredcites →https://doi.org/10.1104/pp.51.6.1127openalex-snapshot

Malate Dehydrogenase Isoenzymes in Division Synchronized Cultures of Euglena

inferredcites →https://doi.org/10.1105/tpc.106.044305openalex-snapshot

Tic21 Is an Essential Translocon Component for Protein Translocation across the Chloroplast Inner Envelope Membrane

inferredcites →https://doi.org/10.1105/tpc.108.063552openalex-snapshot

A 1-Megadalton Translocation Complex Containing Tic20 and Tic21 Mediates Chloroplast Protein Import at the Inner Envelope Membrane

inferredcites →https://doi.org/10.1105/tpc.15.00395openalex-snapshot

Remobilization of Phytol from Chlorophyll Degradation Is Essential for Tocopherol Synthesis and Growth of Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.16.00478openalex-snapshot

Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.18.00357openalex-snapshot

A Ycf2-FtsHi Heteromeric AAA-ATPase Complex Is Required for Chloroplast Protein Import

inferredcites →https://doi.org/10.1110/ps.8.5.978openalex-snapshot

ChloroP, a neural network‐based method for predicting chloroplast transit peptides and their cleavage sites

inferredcites →https://doi.org/10.1111/j.1550-7408.2012.00634.xopenalex-snapshot

Nucleus‐encoded mRNA s for Chloroplast Proteins GapA , PetA , and PsbO are Trans‐spliced in the Flagellate Euglena gracilis Irrespective of Light and Plastid Function

inferredcites →https://doi.org/10.1111/jeu.12282openalex-snapshot

Evolutionary History of the Enzymes Involved in the Calvin–Benson Cycle in Euglenids

inferredcites →https://doi.org/10.1111/jpy.12491openalex-snapshot

The tetrapyrrole synthesis pathway as a model of horizontal gene transfer in euglenoids

inferredcites →https://doi.org/10.1111/mmi.13302openalex-snapshot

Protein–protein interactions indicate composition of a 480 kDa SELMA complex in the second outermost membrane of diatom complex plastids

inferredcites →https://doi.org/10.1111/tpj.13352openalex-snapshot

Isolation and characterization of mutants corresponding to the MENA , MENB , MENC and MENE enzymatic steps of 5′‐monohydroxyphylloquinone biosynthesis in Chlamydomonas reinhardtii

inferredcites →https://doi.org/10.1128/ec.00083-09openalex-snapshot

An Unusual ERAD-Like Complex Is Targeted to the Apicoplast ofPlasmodium falciparum

inferredcites →https://doi.org/10.1128/ec.00222-06openalex-snapshot

Analysis of Euglena gracilis Plastid-Targeted Proteins Reveals Different Classes of Transit Sequences

inferredcites →https://doi.org/10.1128/ec.00299-13openalex-snapshot

Endosymbiotic Gene Transfer in Tertiary Plastid-Containing Dinoflagellates

inferredcites →https://doi.org/10.1146/annurev-arplant-042811-105439openalex-snapshot

The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants

inferredcites →https://doi.org/10.1146/annurev-arplant-043014-114744openalex-snapshot

The Plastid Terminal Oxidase: Its Elusive Function Points to Multiple Contributions to Plastid Physiology

inferredcites →https://doi.org/10.1146/annurev-biochem-052010-100934openalex-snapshot

Methylerythritol Phosphate Pathway of Isoprenoid Biosynthesis

inferredcites →https://doi.org/10.1146/annurev-micro-092412-155741openalex-snapshot

The Algal Past and Parasite Present of the Apicoplast

inferredcites →https://doi.org/10.1186/1471-2148-10-191openalex-snapshot

A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum

inferredcites →https://doi.org/10.1186/1471-2148-11-105openalex-snapshot

Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids

inferredcites →https://doi.org/10.1186/1471-2148-12-29openalex-snapshot

Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida)

inferredcites →https://doi.org/10.1186/1471-2148-8-203openalex-snapshot

Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes

inferredcites →https://doi.org/10.1186/1471-2229-10-223openalex-snapshot

The physical and functional borders of transit peptide-like sequences in secondary endosymbionts

inferredcites →https://doi.org/10.1186/s12864-016-2540-6openalex-snapshot

De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

inferredcites →https://doi.org/10.1186/s12915-019-0626-8openalex-snapshot

Transcriptome, proteome and draft genome of Euglena gracilis

inferredcites →https://doi.org/10.1242/jcs.02277openalex-snapshot

Homologous and heterologous reconstitution of Golgi to chloroplast transport and protein import into the complex chloroplasts of Euglena

inferredcites →https://doi.org/10.1371/journal.pgen.1007761openalex-snapshot

Order of removal of conventional and nonconventional introns from nuclear transcripts of Euglena gracilis

inferredcites →https://doi.org/10.1371/journal.pone.0002205openalex-snapshot

Chlamydiae Has Contributed at Least 55 Genes to Plantae with Predominantly Plastid Functions

inferredcites →https://doi.org/10.1371/journal.pone.0053820openalex-snapshot

Systematics of a Kleptoplastidal Dinoflagellate, Gymnodinium eucyaneum Hu (Dinophyceae), and Its Cryptomonad Endosymbiont

inferredcites →https://doi.org/10.1371/journal.pone.0060826openalex-snapshot

Transcriptomic Study Reveals Widespread Spliced Leader Trans-Splicing, Short 5′-UTRs and Potential Complex Carbon Fixation Mechanisms in the Euglenoid Alga Eutreptiella sp.

inferredcites →https://doi.org/10.1515/znc-1989-5-621openalex-snapshot

5'-Monohydroxyphylloquinone as a Component of Photosystem I

inferredcites →https://doi.org/10.2216/07-36.1openalex-snapshot

Serial Replacement of Diatom Endosymbionts in Two Freshwater Dinoflagellates, Peridiniopsis spp. (Peridiniales, Dinophyceae)

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3389/fcimb.2016.00067openalex-snapshot

Was the Chlamydial Adaptative Strategy to Tryptophan Starvation an Early Determinant of Plastid Endosymbiosis?

inferredcites →https://doi.org/10.3389/fpls.2018.00336openalex-snapshot

Assembly and Transfer of Iron–Sulfur Clusters in the Plastid

inferredcites →https://doi.org/10.3389/fpls.2018.00370openalex-snapshot

Alterations of Membrane Lipid Content Correlated With Chloroplast and Mitochondria Development in Euglena gracilis

inferredcites →https://doi.org/10.5586/asbp.2014.048openalex-snapshot

Primary endosymbiosis: have cyanobacteria and Chlamydiae ever been roommates?

inferredcites →https://doi.org/10.5962/bhl.title.2077openalex-snapshot

Organisation, systematik und geographisches verhältniss der infusionsthierchen. Zwei vorträge, in der Akademie der wissenschaften zu Berlin gehalten in den jahren 1828 und 1830, von C.G. Ehrenberg. Mit 8 kupfertafeln in folio ...

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/bit.27516openalex-snapshot

Molecular tools and applications of Euglena gracilis: From biorefineries to bioremediation

inferred← citeshttps://doi.org/10.1016/j.biortech.2020.124495openalex-snapshot

High-throughput proteomics and metabolomic studies guide re-engineering of metabolic pathways in eukaryotic microalgae: A review

inferred← citeshttps://doi.org/10.1098/rsob.200302openalex-snapshot

Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea

inferred← citeshttps://doi.org/10.21873/anticanres.16012openalex-snapshot

Photosynthesis in Plants and Algae

inferred← citeshttps://doi.org/10.3390/metabo9060115openalex-snapshot

Euglena Central Metabolic Pathways and Their Subcellular Locations

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