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Ancient Occasional Host Switching of Maternally Transmitted Bacterial Symbionts of Chemosynthetic Vesicomyid Clams
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/0300-9629(94)00211-bopenalex-snapshot
Feeding and digestive adaptations of bivalve molluscs to sulphide-rich habitats
inferredcites →https://doi.org/10.1016/j.cub.2007.04.039openalex-snapshot
Reduced Genome of the Thioautotrophic Intracellular Symbiont in a Deep-Sea Clam, Calyptogena okutanii
inferredcites →https://doi.org/10.1016/j.margen.2016.09.003openalex-snapshot
Updated mitochondrial phylogeny of Pteriomorph and Heterodont Bivalvia, including deep-sea chemosymbiotic Bathymodiolus mussels, vesicomyid clams and the thyasirid clam Conchocele cf. bisecta
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1038/ismej.2015.176openalex-snapshot
Heterogeneous composition of key metabolic gene clusters in a vent mussel symbiont population
inferredcites →https://doi.org/10.1038/nrmicro1992openalex-snapshot
Symbiotic diversity in marine animals: the art of harnessing chemosynthesis
inferredcites →https://doi.org/10.1038/nrmicro2262openalex-snapshot
A complex journey: transmission of microbial symbionts
inferredcites →https://doi.org/10.1073/pnas.1402476111openalex-snapshot
Intrasperm vertical symbiont transmission
inferredcites →https://doi.org/10.1073/pnas.90.12.5695openalex-snapshot
Transovarial inheritance of endosymbiotic bacteria in clams inhabiting deep-sea hydrothermal vents and cold seeps.
inferredcites →https://doi.org/10.1073/pnas.92.16.7232openalex-snapshot
Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site.
inferredcites →https://doi.org/10.1073/pnas.95.17.9962openalex-snapshot
Cospeciation of chemoautotrophic bacteria and deep sea clams
inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot
An Approximately Unbiased Test of Phylogenetic Tree Selection
inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1246openalex-snapshot
CONSEL: for assessing the confidence of phylogenetic tree selection
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/msn010openalex-snapshot
Lateral Symbiont Acquisition in a Maternally Transmitted Chemosynthetic Clam Endosymbiosis
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/22.20.4354openalex-snapshot
Convenient single-step, one tube purification of PCR products for direct sequencing
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1098/rsos.160130openalex-snapshot
Surfing the vegetal pole in a small population: extracellular vertical transmission of an 'intracellular' deep-sea clam symbiont
inferredcites →https://doi.org/10.1111/j.1439-0485.2007.00119.xopenalex-snapshot
Growth, production, and mortality of the chemosynthetic vesicomyid bivalve, Calyptogena kilmeri from cold seeps off central California
inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03021.xopenalex-snapshot
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data
inferredcites →https://doi.org/10.1126/science.1138438openalex-snapshot
The Calyptogena magnifica Chemoautotrophic Symbiont Genome
inferredcites →https://doi.org/10.1128/aem.61.4.1555-1562.1995openalex-snapshot
Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
inferredcites →https://doi.org/10.1186/1471-2105-11-s1-s60openalex-snapshot
A parameter-adaptive dynamic programming approach for inferring cophylogenies
inferredcites →https://doi.org/10.1186/1471-2148-10-50openalex-snapshot
Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA
inferredcites →https://doi.org/10.1186/1471-2148-11-285openalex-snapshot
Loss of genes for DNA recombination and repair in the reductive genome evolution of thioautotrophic symbionts of Calyptogena clams
inferredcites →https://doi.org/10.1186/1748-7188-5-16openalex-snapshot
Jane: a new tool for the cophylogeny reconstruction problem
inferredcites →https://doi.org/10.1371/journal.pone.0009957openalex-snapshot
Vesicomyidae (Bivalvia): Current Taxonomy and Distribution
inferredcites →https://doi.org/10.1371/journal.pone.0033359openalex-snapshot
Phylogeny and Diversification Patterns among Vesicomyid Bivalves
inferredcites →https://doi.org/10.1371/journal.pone.0064830openalex-snapshot
Physical Proximity May Promote Lateral Acquisition of Bacterial Symbionts in Vesicomyid Clams
inferredcites →https://doi.org/10.1371/journal.pone.0171274openalex-snapshot
Loss of genes related to Nucleotide Excision Repair (NER) and implications for reductive genome evolution in symbionts of deep-sea vesicomyid clams
inferredcites →https://doi.org/10.18941/venusjjm.56.3_189openalex-snapshot
Calyptogena okutanii n. sp., a Sibling Species of Calyptogena soyoae Okutani, 1957 (Bivalvia : Vesicomyidae)
inferredcites →https://doi.org/10.2983/0730-8000(2008)27[129:aocbdm]2.0.co;2openalex-snapshot
Absence of Cospeciation Between Deep-Sea Mytilids and Their Thiotrophic Endosymbionts
inferredcites →https://doi.org/10.3109/19401736.2015.1089488openalex-snapshot
Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica
inferredcites →https://doi.org/10.3354/meps064309openalex-snapshot
Occurrence of bacteria in the primary oocytes of vesicomyid clam Calyptogena soyoae
inferredcites →https://doi.org/10.3354/meps333185openalex-snapshot
Long-term in situ monitoring of spawning behavior and fecundity in Calyptogena spp.
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.4808.1.4zenodo-depositor-declared
A new genus Turneroconcha (Bivalvia: Vesicomyidae: Pliocardiinae) for the giant hydrothermal vent clam ‘Calyptogena’ magnifica
inferred← citeshttps://doi.org/10.1002/ece3.4153openalex-snapshot
Comparative mitochondrial genomic analyses of three chemosynthetic vesicomyid clams from deep‐sea habitats
inferred← citeshttps://doi.org/10.1007/s00227-023-04335-9openalex-snapshot
Morphological aspects of oogenesis in the deep-sea clam Calyptogena pacifica (Pliocardiinae; Vesicomyidae)
inferred← citeshttps://doi.org/10.1007/s13131-025-2533-xopenalex-snapshot
Transcriptome sequencing reveals gene expression patterns in non-symbiotic tissues of the cold seep clam Phreagena okutanii
inferred← citeshttps://doi.org/10.1016/j.isci.2023.107033openalex-snapshot
Early genome erosion and internal phage-symbiont-host interaction in the endosymbionts of a cold-seep tubeworm
inferred← citeshttps://doi.org/10.1038/s41396-022-01261-4openalex-snapshot
Endosymbiont population genomics sheds light on transmission mode, partner specificity, and stability of the scaly-foot snail holobiont
inferred← citeshttps://doi.org/10.1038/s41598-026-41176-0openalex-snapshot
A novel bioenergetic model outlines the metabolism of a deep-sea clam and that of its sulfur-oxidizing symbionts
inferred← citeshttps://doi.org/10.1093/gbe/evae112openalex-snapshot
Endosymbioses Have Shaped the Evolution of Biological Diversity and Complexity Time and Time Again
inferred← citeshttps://doi.org/10.1093/molbev/msaa241openalex-snapshot
Host–Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam
inferred← citeshttps://doi.org/10.1098/rspb.2018.2157openalex-snapshot
Transmission strategies in a chemosynthetic symbiosis: detection and quantification of symbionts in host tissues and their environment
inferred← citeshttps://doi.org/10.1098/rspb.2019.0065openalex-snapshot
Match and mismatch between dietary switches and microbial partners in plant sap-feeding insects
inferred← citeshttps://doi.org/10.1098/rspb.2021.2137openalex-snapshot
Divergent paths in the evolutionary history of maternally transmitted clam symbionts
inferred← citeshttps://doi.org/10.1101/2020.02.01.930370openalex-snapshot
Extreme Genomic Makeover: Evolutionary History of Maternally-transmitted Clam Symbionts
inferred← citeshttps://doi.org/10.1101/2020.10.19.345819openalex-snapshot
Differences in cofactor, oxygen and sulfur requirements influence niche adaptation in deep-sea vesicomyid clam symbioses
inferred← citeshttps://doi.org/10.1111/1755-0998.13846openalex-snapshot
Reduced chemosymbiont genome in the methane seep thyasirid and the cooperated metabolisms in the holobiont under anaerobic sediment
inferred← citeshttps://doi.org/10.1111/cla.70001openalex-snapshot
Phylogenomic analyses of Pliocardiinae (Bivalvia: Vesicomyidae) update genus‐level taxonomy and shed light on trait evolution
inferred← citeshttps://doi.org/10.1111/mec.15224openalex-snapshot
Host hybridization as a potential mechanism of lateral symbiont transfer in deep‐sea vesicomyid clams
inferred← citeshttps://doi.org/10.1111/mec.v28.21openalex-snapshot
Host hybridization as a potential mechanism of lateral symbiont transfer in deep‐sea vesicomyid clams
inferred← citeshttps://doi.org/10.1128/aem.00185-22openalex-snapshot
Symbiont Community Composition in Rimicaris kairei Shrimps from Indian Ocean Vents with Notes on Mineralogy
inferred← citeshttps://doi.org/10.1134/s1063074025700245openalex-snapshot
The Genetic Diversity of the Chemosymbiotic Bivalve Calyptogena pacifica Dall, 1891 (Vesicomyidae: Pliocardiinae)
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008935openalex-snapshot
Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0217952openalex-snapshot
The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids
inferred← citeshttps://doi.org/10.3389/fmars.2019.00680openalex-snapshot
Host–Symbiont Interactions in Deep-Sea Chemosymbiotic Vesicomyid Clams: Insights From Transcriptome Sequencing
inferred← citeshttps://doi.org/10.3390/md24090312openalex-snapshot
The Host–Symbiont–Pathogen Triad in Bathymodiolus azoricus: The Multifunctional Gill at the Deep-Sea Interface
inferred← citeshttps://doi.org/10.70675/bf7aab7fzc361z40c2z9ac6z34c7f7b317dbopenalex-snapshot
Cycles de vie de deux crevettes hydrothermales de la dorsale médio-atlantique : Rimicaris exoculata et Rimicaris chacei
inferred← citeshttps://doi.org/10.70675/c8117cd6z7afcz4f34z868cz339f329167e6openalex-snapshot
The bioenergetic modeling of symbiotrophic bivalves
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