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GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A Revised Root for the Human Y Chromosomal Phylogenetic Tree: The Origin of Patrilineal Diversity in Africa
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Divergence of character and premature convergence: A survey of methodologies for promoting diversity in evolutionary optimization
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Can one learn history from the allelic spectrum?
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XVII.—The Distribution of Gene Ratios for Rare Mutations
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On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?
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Inferring human population size and separation history from multiple genome sequences
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Methods and models for unravelling human evolutionary history
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Genome-wide genotype and sequence-based reconstruction of the 140,000 year history of modern human ancestry
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Ancient Human Migration after Out-of-Africa
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inferredcites →https://doi.org/10.1073/pnas.1002563107openalex-snapshot
Working toward a synthesis of archaeological, linguistic, and genetic data for inferring African population history
inferredcites →https://doi.org/10.1073/pnas.1019276108openalex-snapshot
Demographic history and rare allele sharing among human populations
inferredcites →https://doi.org/10.1073/pnas.1503717112openalex-snapshot
Fundamental limits on the accuracy of demographic inference based on the sample frequency spectrum
inferredcites →https://doi.org/10.1080/01621459.2019.1635482openalex-snapshot
Efficiently Inferring the Demographic History of Many Populations With Allele Count Data
inferredcites →https://doi.org/10.1090/s0025-5718-1970-0258249-6openalex-snapshot
A Family of Variable-Metric Methods Derived by Variational Means
inferredcites →https://doi.org/10.1090/s0025-5718-1970-0274029-xopenalex-snapshot
Conditioning of Quasi-Newton Methods for Function Minimization
inferredcites →https://doi.org/10.1093/bioinformatics/btr124openalex-snapshot
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios
inferredcites →https://doi.org/10.1093/bioinformatics/btt763openalex-snapshot
DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data
inferredcites →https://doi.org/10.1093/biomet/92.3.519openalex-snapshot
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A new approach to variable metric algorithms
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An efficient method for finding the minimum of a function of several variables without calculating derivatives
inferredcites →https://doi.org/10.1093/comjnl/7.4.308openalex-snapshot
A Simplex Method for Function Minimization
inferredcites →https://doi.org/10.1093/gigascience/giaa005openalex-snapshot
GADMA: Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data
inferredcites →https://doi.org/10.1093/imamat/6.3.222openalex-snapshot
The Convergence of a Class of Double-rank Minimization Algorithms
inferredcites →https://doi.org/10.1093/molbev/msv255openalex-snapshot
Computationally Efficient Composite Likelihood Statistics for Demographic Inference
inferredcites →https://doi.org/10.1101/gr.079509.108openalex-snapshot
Population genetic inference from genomic sequence variation
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Adaptive step size random search
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/2041-210x.12000openalex-snapshot
On the practical usage of genetic algorithms in ecology and evolution
inferredcites →https://doi.org/10.1111/mec.12591openalex-snapshot
Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population
inferredcites →https://doi.org/10.1111/mec.14266openalex-snapshot
Evaluating mechanisms of diversification in a Guineo‐Congolian tropical forest frog using demographic model selection
inferredcites →https://doi.org/10.1126/science.1237619openalex-snapshot
Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110617-062431openalex-snapshot
Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms
inferredcites →https://doi.org/10.1289/ehp.00108279openalex-snapshot
The Environmental Genome Project: Ethical, Legal, and Social Implications
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1003521openalex-snapshot
Inferring Demographic History from a Spectrum of Shared Haplotype Lengths
inferredcites →https://doi.org/10.1371/journal.pone.0062156openalex-snapshot
Ancestral Genome Inference Using a Genetic Algorithm Approach
inferredcites →https://doi.org/10.1534/genetics.104.030171openalex-snapshot
Maximum-Likelihood Estimation of Demographic Parameters Using the Frequency Spectrum of Unlinked Single-Nucleotide Polymorphisms
inferredcites →https://doi.org/10.1534/genetics.107.070730openalex-snapshot
The Joint Allele-Frequency Spectrum in Closely Related Species
inferredcites →https://doi.org/10.1534/genetics.112.139808openalex-snapshot
Population Genetics Models of Local Ancestry
inferredcites →https://doi.org/10.1534/genetics.117.200493openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation
inferredcites →https://doi.org/10.1534/genetics.117.201251openalex-snapshot
Inferring Demographic History Using Two-Locus Statistics
inferredcites →https://doi.org/10.1534/genetics.118.300733openalex-snapshot
Geometry of the Sample Frequency Spectrum and the Perils of Demographic Inference
inferredcites →https://doi.org/10.1534/genetics.166.1.351openalex-snapshot
The Allele Frequency Spectrum in Genome-Wide Human Variation Data Reveals Signals of Differential Demographic History in Three Large World Populations
inferredcites →https://doi.org/10.2307/3802723openalex-snapshot
Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach
inferredcites →https://doi.org/10.48550/arxiv.1609.04747openalex-snapshot
An overview of gradient descent optimization algorithms

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inferred← citeshttps://doi.org/10.1093/molbev/msab230openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pgen.1010999openalex-snapshot
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inferred← citeshttps://doi.org/10.6084/m9.figshare.26409853openalex-snapshot
Additional file 1 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.6084/m9.figshare.26410044openalex-snapshot
Additional file 2 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.6084/m9.figshare.26756101openalex-snapshot
Additional file 3 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.6084/m9.figshare.26756104openalex-snapshot
Additional file 4 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.6084/m9.figshare.26756107openalex-snapshot
Additional file 5 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.6084/m9.figshare.26756110openalex-snapshot
Additional file 6 of Modelling the demographic history of human North African genomes points to a recent soft split divergence between populations
inferred← citeshttps://doi.org/10.64898/2025.12.18.694482openalex-snapshot
demografr : A toolkit for simulation-based inference in population genetics
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