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Regressed but Not Gone: Patterns of Vision Gene Loss and Retention in Subterranean Mammals
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ar.a.20025openalex-snapshot
Postnatal development of the eye in the naked mole rat (Heterocephalus glaber)
inferredcites →https://doi.org/10.1002/cne.20491openalex-snapshot
Eye and vision in the subterranean rodent cururo (Spalacopus cyanus, octodontidae)
inferredcites →https://doi.org/10.1002/cne.22440openalex-snapshot
Retinal photoreceptors of two subterranean tuco‐tuco species (Rodentia, Ctenomys): Morphology, topography, and spectral sensitivity
inferredcites →https://doi.org/10.1002/cne.903280302openalex-snapshot
Visual system of a naturally microphthalmic mammal: The blind mole rat, Spalax ehrenbergi
inferredcites →https://doi.org/10.1002/jez.1402320106openalex-snapshot
Photoperiod perception in the blind mole rat (Spalax ehrenbergi, Nehring): Involvement of the Harderian gland, atrophied eyes, and melatonin
inferredcites →https://doi.org/10.1002/jmor.1050680205openalex-snapshot
Studies on an anophthalmic strain of mice I. Embryology of the eye region
inferredcites →https://doi.org/10.1006/mgme.2000.3001openalex-snapshot
Prevalence of AIPL1 Mutations in Inherited Retinal Degenerative Disease
inferredcites →https://doi.org/10.1007/978-3-540-69276-8_11openalex-snapshot
Visual Systems and the Role of Vision in Subterranean Rodents: Diversity of Retinal Properties and Visual System Designs
inferredcites →https://doi.org/10.1007/s00359-004-0584-6openalex-snapshot
Features of visual function in the naked mole-rat Heterocephalus glaber
inferredcites →https://doi.org/10.1007/s00439-010-0823-6openalex-snapshot
Use of genome-wide SNP homozygosity mapping in small pedigrees to identify new mutations in VSX2 causing recessive microphthalmia and a semidominant inner retinal dystrophy
inferredcites →https://doi.org/10.1016/j.ajhg.2009.10.012openalex-snapshot
Mutations in TRPM1 Are a Common Cause of Complete Congenital Stationary Night Blindness
inferredcites →https://doi.org/10.1016/j.ajhg.2012.10.023openalex-snapshot
Whole-Exome Sequencing Identifies LRIT3 Mutations as a Cause of Autosomal-Recessive Complete Congenital Stationary Night Blindness
inferredcites →https://doi.org/10.1016/j.celrep.2014.07.030openalex-snapshot
Adaptations to a Subterranean Environment and Longevity Revealed by the Analysis of Mole Rat Genomes
inferredcites →https://doi.org/10.1016/j.ympev.2014.05.016openalex-snapshot
Eyes underground: Regression of visual protein networks in subterranean mammals
inferredcites →https://doi.org/10.1017/cbo9780511693281.002openalex-snapshot
THE ORIGIN OF SPECIES BY MEANS OF NATURAL SELECTION
inferredcites →https://doi.org/10.1017/s0952523800176138openalex-snapshot
Photoreceptor types and distributions in the retinae of insectivores
inferredcites →https://doi.org/10.1017/s0952523804043020openalex-snapshot
Identification of retinal neurons in a regressive rodent eye (the naked mole-rat)
inferredcites →https://doi.org/10.1017/s0952523812000429openalex-snapshot
Losses of functional opsin genes, short-wavelength cone photopigments, and color vision—A significant trend in the evolution of mammalian vision
inferredcites →https://doi.org/10.1038/361156a0openalex-snapshot
Ocular regression conceals adaptive progression of the visual system in a blind subterranean mammal
inferredcites →https://doi.org/10.1038/nature10533openalex-snapshot
Genome sequencing reveals insights into physiology and longevity of the naked mole rat
inferredcites →https://doi.org/10.1038/nature13182openalex-snapshot
A promoter-level mammalian expression atlas
inferredcites →https://doi.org/10.1038/ncomms4966openalex-snapshot
Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax
inferredcites →https://doi.org/10.1046/j.1460-9568.2002.02161.xopenalex-snapshot
Adaptive loss of ultraviolet‐sensitive/violet‐sensitive (UVS/VS) cone opsin in the blind mole rat (Spalax ehrenbergi)
inferredcites →https://doi.org/10.1071/am01075_bropenalex-snapshot
Life Underground: The Biology Of Subterranean Rodents
inferredcites →https://doi.org/10.1073/pnas.0404197101openalex-snapshot
Leber congenital amaurosis linked to AIPL1: A mouse model reveals destabilization of cGMP phosphodiesterase
inferredcites →https://doi.org/10.1073/pnas.0507042102openalex-snapshot
Evidence from opsin genes rejects nocturnality in ancestral primates
inferredcites →https://doi.org/10.1073/pnas.0813201106openalex-snapshot
The evolution of color vision in nocturnal mammals
inferredcites →https://doi.org/10.1073/pnas.0908711106openalex-snapshot
TRPM1 is required for the depolarizing light response in retinal ON-bipolar cells
inferredcites →https://doi.org/10.1073/pnas.1013850108openalex-snapshot
Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus
inferredcites →https://doi.org/10.1073/pnas.94.25.13754openalex-snapshot
The interphotoreceptor retinoid binding protein gene in therian mammals: Implications for higher level relationships and evidence for loss of function in the marsupial mole
inferredcites →https://doi.org/10.1093/molbev/msw112openalex-snapshot
Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals
inferredcites →https://doi.org/10.1093/nar/gkh036openalex-snapshot
The Gene Ontology (GO) database and informatics resource
inferredcites →https://doi.org/10.1097/00001756-200208070-00013openalex-snapshot
The circadian photopigment melanopsin is expressed in the blind subterranean mole rat, Spalax
inferredcites →https://doi.org/10.1098/rsos.140386openalex-snapshot
Opsin transcripts of predatory diving beetles: a comparison of surface and subterranean photic niches
inferredcites →https://doi.org/10.1098/rspb.2002.2278openalex-snapshot
Genetic evidence for the ancestral loss of short-wavelength-sensitive cone pigments in mysticete and odontocete cetaceans
inferredcites →https://doi.org/10.1098/rspb.2014.2192openalex-snapshot
Genomic evidence for rod monochromacy in sloths and armadillos suggests early subterranean history for Xenarthra
inferredcites →https://doi.org/10.1098/rspb.2015.1817openalex-snapshot
Spectral shifts of mammalian ultraviolet-sensitive pigments (short wavelength-sensitive opsin 1) are associated with eye length and photic niche evolution
inferredcites →https://doi.org/10.1111/eth.12515openalex-snapshot
Behavioural Tests Reveal Severe Visual Deficits in the Strictly Subterranean African Mole‐Rats (Bathyergidae) but Efficient Vision in the Fossorial Rodent Coruro (Spalacopus cyanus, Octodontidae)
inferredcites →https://doi.org/10.1111/evo.13022openalex-snapshot
Repeated eye reduction events reveal multiple pathways to degeneration in a family of marine snails
inferredcites →https://doi.org/10.1111/evo.13326openalex-snapshot
Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead‐end
inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot
Tissue-based map of the human proteome
inferredcites →https://doi.org/10.1136/jmedgenet-2017-104837openalex-snapshot
Their loss is our gain: regressive evolution in vertebrates provides genomic models for uncovering human disease loci
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134216openalex-snapshot
Regressive Evolution in Astyanax Cavefish
inferredcites →https://doi.org/10.1146/annurev.es.26.110195.001341openalex-snapshot
VESTIGIALIZATION AND LOSS OF NONFUNCTIONAL CHARACTERS
inferredcites →https://doi.org/10.1186/1750-1172-2-47openalex-snapshot
Anophthalmia and microphthalmia
inferredcites →https://doi.org/10.1186/s12862-017-1094-9openalex-snapshot
The role of isolation on contrasting phylogeographic patterns in two cave crustaceans
inferredcites →https://doi.org/10.1242/jcs.s2-50.200.547openalex-snapshot
Contributions to our Knowledge of the Anatomy of Notoryctes typhlops, Stirling
inferredcites →https://doi.org/10.1242/jcs.s2-53.210.327openalex-snapshot
The Eyes of Chrysochloris hottentota and C. asiatica
inferredcites →https://doi.org/10.1242/jeb.045914openalex-snapshot
Identification and characterization of visual pigments in caecilians (Amphibia: Gymnophiona), an order of limbless vertebrates with rudimentary eyes
inferredcites →https://doi.org/10.1242/jeb.107.1.59openalex-snapshot
Photoperiodic Effects On Thermoregulation in A ‘Blind’ Subterranean Mammal
inferredcites →https://doi.org/10.1371/journal.pgen.1002924openalex-snapshot
Vsx2 Controls Eye Organogenesis and Retinal Progenitor Identity Via Homeodomain and Non-Homeodomain Residues Required for High Affinity DNA Binding
inferredcites →https://doi.org/10.1371/journal.pgen.1003432openalex-snapshot
Rod Monochromacy and the Coevolution of Cetacean Retinal Opsins
inferredcites →https://doi.org/10.1371/journal.pone.0068867openalex-snapshot
Independent Losses of Visual Perception Genes Gja10 and Rbp3 in Echolocating Bats (Order: Chiroptera)
inferredcites →https://doi.org/10.1371/journal.pone.0090342openalex-snapshot
Lrit3 Deficient Mouse (nob6): A Novel Model of Complete Congenital Stationary Night Blindness (cCSNB)
inferredcites →https://doi.org/10.1534/g3.114.011262openalex-snapshot
Sensory Rewiring in an Echolocator: Genome-Wide Modification of Retinogenic and Auditory Genes in the Bat Myotis davidii
inferredcites →https://doi.org/10.1890/13-1917.1openalex-snapshot
EltonTraits 1.0: Species‐level foraging attributes of the world's birds and mammals
inferredcites →https://doi.org/10.3389/fevo.2016.00061openalex-snapshot
Inactivation of Cone-Specific Phototransduction Genes in Rod Monochromatic Cetaceans
inferredcites →https://doi.org/10.3389/fnana.2016.00001openalex-snapshot
Extrinsic Sources of Cholinergic Innervation of the Striatal Complex: A Whole-Brain Mapping Analysis
inferredcites →https://doi.org/10.3389/fnana.2016.00061openalex-snapshot
Non-image Forming Light Detection by Melanopsin, Rhodopsin, and Long-Middlewave (L/W) Cone Opsin in the Subterranean Blind Mole Rat, Spalax Ehrenbergi: Immunohistochemical Characterization, Distribution, and Connectivity
inferredcites →https://doi.org/10.7554/elife.25835openalex-snapshot
Building bridges between cellular and molecular structural biology
inferredcites →https://doi.org/10.7554/elife.25884openalex-snapshot
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.12688/openreseurope.13795.1zenodo-depositor-declared
Genomic evidence for the parallel regression of melatonin synthesis and signaling pathways in placental mammals
inferred← citeshttps://doi.org/10.12688/openreseurope.13795.2zenodo-depositor-declared
Genomic evidence for the parallel regression of melatonin synthesis and signaling pathways in placental mammals
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116110openalex-snapshot
Host genomic convergence, rather than gut microbiome convergence, underlies the convergent evolution of subterranean adaptation in mammals
inferred← citeshttps://doi.org/10.1016/j.cub.2020.08.035openalex-snapshot
Functional, Morphological, and Evolutionary Characterization of Hearing in Subterranean, Eusocial African Mole-Rats
inferred← citeshttps://doi.org/10.1016/j.jchemneu.2020.101856openalex-snapshot
The hypercholinergic brain of the Cape golden mole (Chrysochloris asiatica)
inferred← citeshttps://doi.org/10.1016/j.neubiorev.2022.104550openalex-snapshot
A natural history of vision loss: Insight from evolution for human visual function
inferred← citeshttps://doi.org/10.1038/s41467-021-23178-wopenalex-snapshot
Relaxed selection underlies genome erosion in socially parasitic ant species
inferred← citeshttps://doi.org/10.1038/s41467-024-54478-6openalex-snapshot
Reduced adult stem cell fate specification led to eye reduction in cave planarians
inferred← citeshttps://doi.org/10.1093/database/baaf065openalex-snapshot
Gene Loss DB: a curated database for gene loss in mammals—the cetacean collection
inferred← citeshttps://doi.org/10.1093/icb/icy047openalex-snapshot
The Kingdom of the Blind: Disentangling Fundamental Drivers in the Evolution of Eye Loss
inferred← citeshttps://doi.org/10.1093/icb/icy082openalex-snapshot
Evolution in the Dark: Unifying our Understanding of Eye Loss
inferred← citeshttps://doi.org/10.1093/molbev/msaa070openalex-snapshot
Positive Selection and Inactivation in the Vision and Hearing Genes of Cetaceans
inferred← citeshttps://doi.org/10.1093/molbev/msaa249openalex-snapshot
Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals
inferred← citeshttps://doi.org/10.1098/rspb.2023.2847openalex-snapshot
Gene loss and relaxed selection of plaat1 in vertebrates adapted to low-light environments
inferred← citeshttps://doi.org/10.1111/1365-2435.70162openalex-snapshot
Visual ecology in challenging environments: How organisms evolve in extremes of light and adapt to shifting conditions
inferred← citeshttps://doi.org/10.1111/1749-4877.70034openalex-snapshot
Subterranean Traits of the Visual System in Mandarin Voles ( Lasiopodomys mandarinus ): Structural Remodeling and Functional Degeneration
inferred← citeshttps://doi.org/10.1111/evo.14050openalex-snapshot
Hard to get, easy to lose: Evolution of mantle photoreceptor organs in bivalves (Bivalvia, Pteriomorphia)
inferred← citeshttps://doi.org/10.1111/jeb.13970openalex-snapshot
Reconstruction of evolutionary changes in fat and toxin consumption reveals associations with gene losses in mammals: A case study for the lipase inhibitor PNLIPRP1 and the xenobiotic receptor NR1I3
inferred← citeshttps://doi.org/10.1152/physrev.00017.2024openalex-snapshot
Modulating vertebrate physiology by genomic fine-tuning of GPCR functions
inferred← citeshttps://doi.org/10.1186/s12915-022-01243-0openalex-snapshot
Gene losses may contribute to subterranean adaptations in naked mole-rat and blind mole-rat
inferred← citeshttps://doi.org/10.1242/dev.182923openalex-snapshot
Evolution and development of complex eyes: a celebration of diversity
inferred← citeshttps://doi.org/10.28991/esj-2018-01151openalex-snapshot
Evolution of Eye Reduction and Loss in Trilobites and Some Related Fossil Arthropods
inferred← citeshttps://doi.org/10.3389/fevo.2022.982073openalex-snapshot
Molecular evolution of vision-related genes may contribute to marsupial photic niche adaptations
inferred← citeshttps://doi.org/10.3389/fnmol.2023.1131093openalex-snapshot
Evolution of visual guanylyl cyclases and their activating proteins with respect to clade and species-specific visual system adaptation
inferred← citeshttps://doi.org/10.7554/elife.77999openalex-snapshot
Vision-related convergent gene losses reveal SERPINE3’s unknown role in the eye
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