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Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei)

https://doi.org/10.1093/jhered/esab017
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00239-010-9426-zopenalex-snapshot
Gene Duplication and Divergence of Long Wavelength-Sensitive Opsin Genes in the Guppy, Poecilia reticulata
inferredcites →https://doi.org/10.1007/s00359-003-0435-xopenalex-snapshot
Intraspecific variation in retinal cone distribution in the bluefin killifish, Lucania goodei
inferredcites →https://doi.org/10.1007/s00359-003-0478-zopenalex-snapshot
Population variation in opsin expression in the bluefin killifish, Lucania goodei : a real-time PCR study
inferredcites →https://doi.org/10.1007/s00359-015-1041-4openalex-snapshot
Developmental plasticity in vision and behavior may help guppies overcome increased turbidity
inferredcites →https://doi.org/10.1016/j.anbehav.2010.03.017openalex-snapshot
Female mating preferences, lighting environment, and a test of the sensory bias hypothesis in the bluefin killifish
inferredcites →https://doi.org/10.1016/j.gene.2005.12.005openalex-snapshot
Functional characterization of visual opsin repertoire in Medaka (Oryzias latipes)
inferredcites →https://doi.org/10.1016/j.gene.2007.03.019openalex-snapshot
A novel spectral tuning in the short wavelength-sensitive (SWS1 and SWS2) pigments of bluefin killifish (Lucania goodei)
inferredcites →https://doi.org/10.1016/j.visres.2008.03.025openalex-snapshot
Evolution of vertebrate visual pigments
inferredcites →https://doi.org/10.1016/j.visres.2016.06.013openalex-snapshot
Spectral sensitivity of guppy visual pigments reconstituted in vitro to resolve association of opsins with cone cell types
inferredcites →https://doi.org/10.1016/j.ygeno.2007.03.021openalex-snapshot
Sensory genes and mate choice: Evidence that duplications, mutations, and adaptive evolution alter variation in mating cue genes and their receptors
inferredcites →https://doi.org/10.1016/s0378-1119(01)00674-6openalex-snapshot
Structural and functional features of eukaryotic mRNA untranslated regions
inferredcites →https://doi.org/10.1016/s1350-9462(00)00002-1openalex-snapshot
Molecular evolution of vertebrate visual pigments
inferredcites →https://doi.org/10.1017/s0952523808080255openalex-snapshot
Cone visual pigments of monotremes: Filling the phylogenetic gap
inferredcites →https://doi.org/10.1038/428279aopenalex-snapshot
New mechanism for modulating colour vision
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
inferredcites →https://doi.org/10.1038/s41598-017-15868-7openalex-snapshot
The rises and falls of opsin genes in 59 ray-finned fish genomes and their implications for environmental adaptation
inferredcites →https://doi.org/10.1073/pnas.1417803112openalex-snapshot
Ancestral duplications and highly dynamic opsin gene evolution in percomorph fishes
inferredcites →https://doi.org/10.1073/pnas.1706730115openalex-snapshot
Genetic and plastic variation in opsin gene expression, light sensitivity, and female response to visual signals in the guppy
inferredcites →https://doi.org/10.1086/652994openalex-snapshot
Teasing Apart the Many Effects of Lighting Environment on Opsin Expression and Foraging Preference in Bluefin Killifish
inferredcites →https://doi.org/10.1089/10665270050081478openalex-snapshot
A Greedy Algorithm for Aligning DNA Sequences
inferredcites →https://doi.org/10.1093/acprof:oso/9780199581139.001.0001openalex-snapshot
Animal Eyes
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/cz/zoy038openalex-snapshot
The pervasive effects of lighting environments on sensory drive in bluefin killifish: an investigation into male/male competition, female choice, and predation
inferredcites →https://doi.org/10.1093/cz/zoy043openalex-snapshot
25 Years of sensory drive: the evidence and its watery bias
inferredcites →https://doi.org/10.1093/cz/zoy047openalex-snapshot
Reviewing guppy color vision: integrating the molecular and physiological variation in visual tuning of a classic system for sensory drive
inferredcites →https://doi.org/10.1093/gbe/evx228openalex-snapshot
Genomic Environment Impacts Color Vision Evolution in a Family with Visually Based Sexual Selection
inferredcites →https://doi.org/10.1093/molbev/msp089openalex-snapshot
Adaptive Gene Loss Reflects Differences in the Visual Ecology of Basal Vertebrates
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
inferredcites →https://doi.org/10.1093/molbev/msy159openalex-snapshot
MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025956openalex-snapshot
The "five-sites" rule and the evolution of red and green color vision in mammals
inferredcites →https://doi.org/10.1098/rspb.2002.2042openalex-snapshot
Lighting environment predicts the relative abundance of male colour morphs in bluefin killifish ( Lucania goodei ) populations
inferredcites →https://doi.org/10.1098/rspb.2013.0796openalex-snapshot
Diurnal lighting patterns and habitat alter opsin expression and colour preferences in a killifish
inferredcites →https://doi.org/10.1101/gr.214874.116openalex-snapshot
Direct determination of diploid genome sequences
inferredcites →https://doi.org/10.1111/dgd.12690openalex-snapshot
Mechanistic insights into the evolution of the differential expression of tandemly arrayed cone opsin genes in zebrafish
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05180.xopenalex-snapshot
Rapid light‐induced shifts in opsin expression: finding new opsins, discerning mechanisms of change, and implications for visual sensitivity
inferredcites →https://doi.org/10.1111/j.1420-9101.2005.00886.xopenalex-snapshot
Genetic and environmental variation in the visual properties of bluefin killifish,Lucania goodei
inferredcites →https://doi.org/10.1111/j.1558-5646.1985.tb00420.xopenalex-snapshot
CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
inferredcites →https://doi.org/10.1111/mec.14289openalex-snapshot
Rapid adaptation to a novel light environment: The importance of ontogeny and phenotypic plasticity in shaping the visual system of Nicaraguan Midas cichlid fish (Amphilophus citrinellus spp.)
inferredcites →https://doi.org/10.1126/science.1071757openalex-snapshot
A Low Genomic Number of Recessive Lethals in Natural Populations of Bluefin Killifish and Zebrafish
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135901openalex-snapshot
Perceptual Biases and Mate Choice
inferredcites →https://doi.org/10.1186/1471-2148-10-87openalex-snapshot
Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri
inferredcites →https://doi.org/10.1186/1471-2148-11-81openalex-snapshot
RT-qPCR reveals opsin gene upregulation associated with age and sex in guppies (Poecilia reticulata) - a species with color-based sexual selection and 11 visual-opsin genes
inferredcites →https://doi.org/10.1186/gb-2005-6-3-213openalex-snapshot
The opsins.
inferredcites →https://doi.org/10.1242/jeb.012047openalex-snapshot
The influence of ontogeny and light environment on the expression of visual pigment opsins in the retina of the black bream,Acanthopagrus butcheri
inferredcites →https://doi.org/10.1242/jeb.069922openalex-snapshot
Ontogeny in the visual system of Nile tilapia
inferredcites →https://doi.org/10.1242/jeb.193334openalex-snapshot
Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes
inferredcites →https://doi.org/10.1371/journal.pone.0100330openalex-snapshot
Androgens Increase lws Opsin Expression and Red Sensitivity in Male Three-Spined Sticklebacks
inferredcites →https://doi.org/10.1371/journal.pone.0103953openalex-snapshot
The Giant Mottled Eel, Anguilla marmorata, Uses Blue-Shifted Rod Photoreceptors during Upstream Migration
inferredcites →https://doi.org/10.1371/journal.pone.0240313openalex-snapshot
Phylogenetic analysis and ontogenetic changes in the cone opsins of the western mosquitofish (Gambusia affinis)
inferredcites →https://doi.org/10.1534/genetics.108.090449openalex-snapshot
Molecular Basis of Spectral Tuning in the Red- and Green-Sensitive (M/LWS) Pigments in Vertebrates
inferredcites →https://doi.org/10.2108/zsj.26.349openalex-snapshot
Ontogenetic Changes in Color Vision in the Milkfish (Chanos chanosForsskål, 1775)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.6620/zs.2022.61-16zenodo-depositor-declared
Correlated Expression of the Opsin Retrogene LWS-R and its Host Gene in Two Poeciliid Fishes.
inferred← citeshttps://doi.org/10.1007/s00239-024-10181-0openalex-snapshot
Expansion and Functional Diversification of Long-Wavelength-Sensitive Opsin in Anabantoid Fishes
inferred← citeshttps://doi.org/10.1007/s00359-025-01741-wopenalex-snapshot
Dietary carotenoids enhance SWS1 expression in female western mosquitofish (Gambusia affinis) but do not impair their likelihood of pregnancy in the presence of male guppy
inferred← citeshttps://doi.org/10.1007/s10142-024-01333-yopenalex-snapshot
Knockout of lws1 in zebrafish (Danio rerio) reveals its role in regulating feeding and vision-guided behavior
inferred← citeshttps://doi.org/10.1007/s10228-024-00957-1openalex-snapshot
Does predation pressure alter the visual properties of prey? An assessment of the guppy Poecilia reticulata
inferred← citeshttps://doi.org/10.1007/s10750-023-05139-0openalex-snapshot
Rapid adjustment of cone opsin expression profiles may help Western mosquitofish (Gambusia affinis) maintain foraging efficiency in distinct light environments
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146434openalex-snapshot
Genome-wide identification and expression patterns of opsin genes during larval development in Chinese perch (Siniperca chuatsi)
inferred← citeshttps://doi.org/10.1016/j.preteyeres.2026.101536openalex-snapshot
Seeing in Tandem: Cis and Trans-Regulation of Tandemly-Duplicated Cone Opsin Genes in Zebrafish
inferred← citeshttps://doi.org/10.1016/j.visres.2023.108204openalex-snapshot
The evolution of the green-light-sensitive visual opsin genes (RH2) in teleost fishes
inferred← citeshttps://doi.org/10.1098/rspb.2022.1855openalex-snapshot
Developmental changes of opsin gene expression in ray-finned fishes (Actinopterygii)
inferred← citeshttps://doi.org/10.1098/rspb.2024.2511openalex-snapshot
Opsin gene expression plasticity and spectral sensitivity in male damselflies could mediate female colour morph detection
inferred← citeshttps://doi.org/10.1101/2021.05.11.443711openalex-snapshot
Multiple ancestral and a plethora of recent gene duplications during the evolution of the green sensitive opsin genes ( RH2 ) in teleost fishes
inferred← citeshttps://doi.org/10.1101/2021.09.01.458542openalex-snapshot
Developmental and environmental plasticity in opsin gene expression in Lake Victoria cichlid fish
inferred← citeshttps://doi.org/10.1111/ede.12465openalex-snapshot
Developmental and environmental plasticity in opsin gene expression in Lake Victoria cichlid fish
inferred← citeshttps://doi.org/10.3390/ijms24108786openalex-snapshot
Knockout of sws2a and sws2b in Medaka (Oryzias latipes) Reveals Their Roles in Regulating Vision-Guided Behavior and Eye Development
inferred← citeshttps://doi.org/10.3390/ijms25147513openalex-snapshot
Sws2 Gene Positively Regulates Melanin Production in Plectropomus leopardus Skin via Direct Regulation of the Synthesis of Retinoic Acid
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