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Inferring the Genetic Basis of Sex Determination from the Genome of a Dioecious Nightshade
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Solanaceae — a model for linking genomics with biodiversity
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KARYOTYPIC STUDIES IN SOLANUM SECTION BASARTHRUM (SOLANACEAE)
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Development of male and female flower in Asparagus officinalis. Search for point of transition from hermaphroditic to unisexual developmental pathway
inferredcites →https://doi.org/10.1007/bf00263414openalex-snapshot
Flow-cytometric characterization and sorting of plant chromosomes
inferredcites →https://doi.org/10.1007/s00425-005-0131-xopenalex-snapshot
Silencing of the tobacco pollen pectin methylesterase NtPPME1 results in retarded in vivo pollen tube growth
inferredcites →https://doi.org/10.1007/s00425-010-1136-7openalex-snapshot
BoPMEI1, a pollen-specific pectin methylesterase inhibitor, has an essential role in pollen tube growth
inferredcites →https://doi.org/10.1007/s00425-016-2485-7openalex-snapshot
Repetitive sequences and epigenetic modification: inseparable partners play important roles in the evolution of plant sex chromosomes
inferredcites →https://doi.org/10.1007/s00606-004-0229-9openalex-snapshot
Are ?mating systems? ?breeding systems? of inconsistent and confusing terminology in plant reproductive biology? or is it the other way around?
inferredcites →https://doi.org/10.1007/s11103-005-2910-yopenalex-snapshot
The MYB Transcription Factor Superfamily of Arabidopsis: Expression Analysis and Phylogenetic Comparison with the Rice MYB Family
inferredcites →https://doi.org/10.1007/s11427-010-4060-yopenalex-snapshot
AtMYB103 is a crucial regulator of several pathways affecting Arabidopsis anther development
inferredcites →https://doi.org/10.1016/j.tig.2011.05.001openalex-snapshot
About PAR: The distinct evolutionary dynamics of the pseudoautosomal region
inferredcites →https://doi.org/10.1016/j.tplants.2015.07.010openalex-snapshot
Genetic and Biochemical Mechanisms of Pollen Wall Development
inferredcites →https://doi.org/10.1016/s0070-2153(10)91012-0openalex-snapshot
Sculpting the Flower; the Role of microRNAs in Flower Development
inferredcites →https://doi.org/10.1016/s1360-1385(01)02045-3openalex-snapshot
Pectin methylesterases: cell wall enzymes with important roles in plant physiology
inferredcites →https://doi.org/10.1038/282836a0openalex-snapshot
Dioecious Solanum species of hermaphroditic origin is an example of a broad convergence
inferredcites →https://doi.org/10.1038/nature08498openalex-snapshot
A transposon-induced epigenetic change leads to sex determination in melon
inferredcites →https://doi.org/10.1038/nature11119openalex-snapshot
The tomato genome sequence provides insights into fleshy fruit evolution
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/nrg2167openalex-snapshot
The evolution of sex-biased genes and sex-biased gene expression
inferredcites →https://doi.org/10.1038/s41467-017-01064-8openalex-snapshot
The asparagus genome sheds light on the origin and evolution of a young Y chromosome
inferredcites →https://doi.org/10.1038/s41467-018-06375-yopenalex-snapshot
Genus-wide sequencing supports a two-locus model for sex-determination in Phoenix
inferredcites →https://doi.org/10.1038/s41477-019-0489-6openalex-snapshot
Two Y-chromosome-encoded genes determine sex in kiwifruit
inferredcites →https://doi.org/10.1038/sj.hdy.6800016openalex-snapshot
Plant sex determination and sex chromosomes
inferredcites →https://doi.org/10.1038/srep18917openalex-snapshot
A new physical mapping approach refines the sex-determining gene positions on the Silene latifolia Y-chromosome
inferredcites →https://doi.org/10.1038/srep45388openalex-snapshot
Sexual epigenetics: gender-specific methylation of a gene in the sex determining region of Populus balsamifera
inferredcites →https://doi.org/10.1073/pnas.1207833109openalex-snapshot
Sequencing papaya X and Y h chromosomes reveals molecular basis of incipient sex chromosome evolution
inferredcites →https://doi.org/10.1080/00173139709362600openalex-snapshot
The wall and aperture development of pollen from dioeciousSolanum appendiculatum:What is inaperturate pollen?
inferredcites →https://doi.org/10.1086/283342openalex-snapshot
A Model for the Evolution of Dioecy and Gynodioecy
inferredcites →https://doi.org/10.1093/aob/mcr151openalex-snapshot
Environmental regulation of sex determination in oil palm: current knowledge and insights from other species
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq102openalex-snapshot
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btx153openalex-snapshot
GenomeScope: fast reference-free genome profiling from short reads
inferredcites →https://doi.org/10.1093/gbe/evy274openalex-snapshot
Genome Sequence of Jaltomata Addresses Rapid Reproductive Trait Evolution and Enhances Comparative Genomics in the Hyper-Diverse Solanaceae
inferredcites →https://doi.org/10.1093/gbe/evz088openalex-snapshot
Referee: Reference Assembly Quality Scores
inferredcites →https://doi.org/10.1093/molbev/mst100openalex-snapshot
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
inferredcites →https://doi.org/10.1093/nar/gkq862openalex-snapshot
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
inferredcites →https://doi.org/10.1101/gr.213405.116openalex-snapshot
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
inferredcites →https://doi.org/10.1104/pp.105.1.199openalex-snapshot
Pectin Methylesterase Isoforms in Tomato (Lycopersicon esculentum) Tissues (Effects of Expression of a Pectin Methylesterase Antisense Gene)
inferredcites →https://doi.org/10.1104/pp.113.230144openalex-snapshot
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
inferredcites →https://doi.org/10.1104/pp.17.01310openalex-snapshot
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
inferredcites →https://doi.org/10.1105/tpc.105.037473openalex-snapshot
Pectin Methylesterases and Pectin Dynamics in Pollen Tubes
inferredcites →https://doi.org/10.1105/tpc.111.092411openalex-snapshot
Acetylesterase-Mediated Deacetylation of Pectin Impairs Cell Elongation, Pollen Germination, and Plant Reproduction
inferredcites →https://doi.org/10.1105/tpc.16.00532openalex-snapshot
Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon
inferredcites →https://doi.org/10.1105/tpc.17.00787openalex-snapshot
A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit
inferredcites →https://doi.org/10.1111/gtc.12453openalex-snapshot
MYB transcription factor gene involved in sex determination in Asparagus officinalis
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03500.xopenalex-snapshot
Defective in Tapetal Development and Function 1 is essential for anther development and tapetal function for microspore maturation in Arabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04374.xopenalex-snapshot
The SIDECAR POLLEN gene encodes a microspore-specific LOB/AS2 domain protein required for the correct timing and orientation of asymmetric cell division
inferredcites →https://doi.org/10.1111/j.1438-8677.2012.00706.xopenalex-snapshot
Pollen wall development: the associated enzymes and metabolic pathways
inferredcites →https://doi.org/10.1111/j.1558-5646.1987.tb05864.xopenalex-snapshot
THE ACCUMULATION OF SEXUALLY ANTAGONISTIC GENES AS A SELECTIVE AGENT PROMOTING THE EVOLUTION OF REDUCED RECOMBINATION BETWEEN PRIMITIVE SEX CHROMOSOMES
inferredcites →https://doi.org/10.1111/j.1558-5646.1989.tb04218.xopenalex-snapshot
FUNCTIONAL DIOECY AND ANDROMONOECY INSOLANUM
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/jse.12638openalex-snapshot
Dynamism and context‐dependency in diversification of the megadiverse plant genus Solanum (Solanaceae)
inferredcites →https://doi.org/10.1111/mec.12217openalex-snapshot
The association between polyploidy and clonal reproduction in diploid and tetraploidChamerion angustifolium
inferredcites →https://doi.org/10.1111/nph.13389openalex-snapshot
Sex‐biased gene expression in dioecious garden asparagus (Asparagus officinalis)
inferredcites →https://doi.org/10.1111/nph.13497openalex-snapshot
Plant contributions to our understanding of sex chromosome evolution
inferredcites →https://doi.org/10.1126/science.1257225openalex-snapshot
A Y-chromosome–encoded small RNA acts as a sex determinant in persimmons
inferredcites →https://doi.org/10.1126/science.220.4601.1049openalex-snapshot
Rapid Flow Cytometric Analysis of the Cell Cycle in Intact Plant Tissues
inferredcites →https://doi.org/10.1146/annurev-arplant-042817-040615openalex-snapshot
One Hundred Ways to Invent the Sexes: Theoretical and Observed Paths to Dioecy in Plants
inferredcites →https://doi.org/10.1146/annurev.arplant.59.032607.092921openalex-snapshot
Structural and Signaling Networks for the Polar Cell Growth Machinery in Pollen Tubes
inferredcites →https://doi.org/10.1186/1471-2105-9-18openalex-snapshot
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
inferredcites →https://doi.org/10.1186/1471-2148-13-214openalex-snapshot
A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree
inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot
A scaling normalization method for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13059-017-1341-9openalex-snapshot
New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
inferredcites →https://doi.org/10.1371/journal.pone.0017288openalex-snapshot
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
inferredcites →https://doi.org/10.1371/journal.pone.0062681openalex-snapshot
Sexual Dimorphism Floral MicroRNA Profiling and Target Gene Expression in Andromonoecious Poplar (Populus tomentosa)
inferredcites →https://doi.org/10.1371/journal.pone.0180003openalex-snapshot
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum)
inferredcites →https://doi.org/10.2307/1219682openalex-snapshot
THREE TAXA CONSTITUTE THE SEXES OF A SINGLE DIOECIOUS SPECIES OF SOLANUM
inferredcites →https://doi.org/10.3389/fpls.2018.01612openalex-snapshot
Pectin Methylesterases: Cell Wall Remodeling Proteins Are Required for Plant Response to Heat Stress
inferredcites →https://doi.org/10.3390/plants2010107openalex-snapshot
Cell Wall Composition, Biosynthesis and Remodeling during Pollen Tube Growth
inferredcites →https://doi.org/10.3732/ajb.1400196openalex-snapshot
The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database
inferredcites →https://doi.org/10.3732/ajb.1400486openalex-snapshot
The ecology, evolution, and biogeography of dioecy in the genus Solanum: With paradigms from the strong dioecy in Solanum polygamum, to the unsuspected and cryptic dioecy in Solanum conocarpum
inferredcites →https://doi.org/10.3897/phytokeys.124.33526openalex-snapshot
Solanum plastisexum, an enigmatic new bush tomato from the Australian Monsoon Tropics exhibiting breeding system fluidity
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/phytokeys.255.140014zenodo-depositor-declared
Pollen and morphometric analysis reveal Solanum tavinuuyuku (Solanaceae), a new dioecious species from Mesoamerican Solanum sect. Anarrhichomenum
inferred← citeshttps://doi.org/10.1002/tax.70088openalex-snapshot
Morphometric analysis of the Solanum appendiculatum species complex ( Solanum sect. Anarrhichomenum )
inferred← citeshttps://doi.org/10.1016/j.cell.2023.04.008openalex-snapshot
Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding
inferred← citeshttps://doi.org/10.1093/molbev/msaf047openalex-snapshot
K-mer-based Approaches to Bridging Pangenomics and Population Genetics
inferred← citeshttps://doi.org/10.1093/molbev/msag003openalex-snapshot
Two independent origins of XY sex chromosomes in Asparagus
inferred← citeshttps://doi.org/10.1093/plphys/kiag438openalex-snapshot
Phylo-mobilome analysis provide insights into transposon dynamics, adaptation and impact on host genomes in Solanaceae
inferred← citeshttps://doi.org/10.3390/genes12030381openalex-snapshot
The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing
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