On the public citation graph

Genome Sequence of Jaltomata Addresses Rapid Reproductive Trait Evolution and Enhances Comparative Genomics in the Hyper-Diverse Solanaceae

https://doi.org/10.1093/gbe/evy274
0 signed · 125 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cfg.393openalex-snapshot
Solanaceae — a model for linking genomics with biodiversity
inferredcites →https://doi.org/10.1002/tax.574010openalex-snapshot
A molecular phylogeny of the Solanaceae
inferredcites →https://doi.org/10.1007/11415770_18openalex-snapshot
Reconstruction of Reticulate Networks from Gene Trees
inferredcites →https://doi.org/10.1007/978-94-007-7347-9_14openalex-snapshot
Merging Ecology and Genomics to Dissect Diversity in Wild Tomatoes and Their Relatives
inferredcites →https://doi.org/10.1007/s00425-006-0264-6openalex-snapshot
SEUSS and LEUNIG regulate cell proliferation, vascular development and organ polarity in Arabidopsis petals
inferredcites →https://doi.org/10.1016/j.pbi.2011.09.003openalex-snapshot
Self/non-self discrimination in angiosperm self-incompatibility
inferredcites →https://doi.org/10.1016/j.tig.2015.07.002openalex-snapshot
The genomics of organismal diversification illuminated by adaptive radiations
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.tree.2010.09.002openalex-snapshot
Adaptation genomics: the next generation
inferredcites →https://doi.org/10.1016/j.tree.2013.09.008openalex-snapshot
Genome sequencing and population genomics in non-model organisms
inferredcites →https://doi.org/10.1016/s0092-8674(00)81093-4openalex-snapshot
The No Apical Meristem Gene of Petunia Is Required for Pattern Formation in Embryos and Flowers and Is Expressed at Meristem and Primordia Boundaries
inferredcites →https://doi.org/10.1023/a:1013639528858openalex-snapshot
Identification of a S-ribonuclease-binding protein in Petunia hybrida
inferredcites →https://doi.org/10.1038/342955a0openalex-snapshot
Style self-incompatibility gene products of Nicotlana alata are ribonucleases
inferredcites →https://doi.org/10.1038/hdy.1979.58openalex-snapshot
The evolution and breakdown of S-allele systems
inferredcites →https://doi.org/10.1038/nature11119openalex-snapshot
The tomato genome sequence provides insights into fleshy fruit evolution
inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot
Inferring ancient divergences requires genes with strong phylogenetic signals
inferredcites →https://doi.org/10.1038/nature13726openalex-snapshot
The genomic substrate for adaptive radiation in African cichlid fish
inferredcites →https://doi.org/10.1038/nature14181openalex-snapshot
Evolution of Darwin’s finches and their beaks revealed by genome sequencing
inferredcites →https://doi.org/10.1038/nbt.2280openalex-snapshot
Hybrid error correction and de novo assembly of single-molecule sequencing reads
inferredcites →https://doi.org/10.1038/ng.2669openalex-snapshot
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
inferredcites →https://doi.org/10.1038/ng.2877openalex-snapshot
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
inferredcites →https://doi.org/10.1038/ng.3046openalex-snapshot
The genome of the stress-tolerant wild tomato species Solanum pennellii
inferredcites →https://doi.org/10.1038/ng.3617openalex-snapshot
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
inferredcites →https://doi.org/10.1038/ng.807openalex-snapshot
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
inferredcites →https://doi.org/10.1038/s41559-018-0584-5openalex-snapshot
Multinucleotide mutations cause false inferences of lineage-specific positive selection
inferredcites →https://doi.org/10.1038/srep31900openalex-snapshot
DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
inferredcites →https://doi.org/10.1073/pnas.0403715101openalex-snapshot
Rapid recent growth and divergence of rice nuclear genomes
inferredcites →https://doi.org/10.1073/pnas.0409137102openalex-snapshot
An algorithm for progressive multiple alignment of sequences with insertions
inferredcites →https://doi.org/10.1073/pnas.1323926111openalex-snapshot
Phylotranscriptomic analysis of the origin and early diversification of land plants
inferredcites →https://doi.org/10.1073/pnas.1400975111openalex-snapshot
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
inferredcites →https://doi.org/10.1073/pnas.1616702114openalex-snapshot
Dynamics of genome size evolution in birds and mammals
inferredcites →https://doi.org/10.1073/pnas.1700073114openalex-snapshot
Wild tobacco genomes reveal the evolution of nicotine biosynthesis
inferredcites →https://doi.org/10.1080/14772000.2015.1099575openalex-snapshot
Third generation sequencing: technology and its potential impact on evolutionary biodiversity research
inferredcites →https://doi.org/10.1086/323273openalex-snapshot
Phylogenetic Relationships of Capsicum (Solanaceae) Using DNA Sequences from Two Noncoding Regions: The Chloroplast atpB‐rbcL Spacer Region and Nuclear waxy Introns
inferredcites →https://doi.org/10.1086/339200openalex-snapshot
Molecular Mechanisms Underlying The Breakdown Of Gametophytic Self‐incompatibility
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot
Automatic annotation of organellar genomes with DOGMA
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btn250openalex-snapshot
Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq102openalex-snapshot
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
inferredcites →https://doi.org/10.1093/bioinformatics/btq539openalex-snapshot
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btv234openalex-snapshot
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btv566openalex-snapshot
Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
inferredcites →https://doi.org/10.1093/database/bar009openalex-snapshot
UniProt Knowledgebase: a hub of integrated protein data
inferredcites →https://doi.org/10.1093/molbev/msl095openalex-snapshot
Molecular and Phylogenetic Analyses of the MADS-Box Gene Family in Tomato
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msq029openalex-snapshot
Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
inferredcites →https://doi.org/10.1093/molbev/mst100openalex-snapshot
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
inferredcites →https://doi.org/10.1093/molbev/msv081openalex-snapshot
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
inferredcites →https://doi.org/10.1093/nar/26.4.1107openalex-snapshot
GeneMark.hmm: new solutions for gene finding
inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot
AUGUSTUS: ab initio prediction of alternative transcripts
inferredcites →https://doi.org/10.1093/nar/gkq862openalex-snapshot
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
inferredcites →https://doi.org/10.1093/nar/gkr1090openalex-snapshot
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
inferredcites →https://doi.org/10.1101/165969openalex-snapshot
Multinucleotide mutations cause false inferences of lineage-specific positive selection
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1101/gr.187237.114openalex-snapshot
Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis
inferredcites →https://doi.org/10.1101/gr.213405.116openalex-snapshot
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
inferredcites →https://doi.org/10.1104/pp.113.230144openalex-snapshot
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
inferredcites →https://doi.org/10.1104/pp.16.00523openalex-snapshot
Evolution of Gene Duplication in Plants
inferredcites →https://doi.org/10.1104/pp.17.01310openalex-snapshot
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
inferredcites →https://doi.org/10.1105/tpc.016154openalex-snapshot
The Molecular and Genetic Bases of S-RNase-Based Self-Incompatibility
inferredcites →https://doi.org/10.1105/tpc.106.048199openalex-snapshot
SLocus Genes and the Evolution of Self-Fertility inArabidopsis thaliana
inferredcites →https://doi.org/10.1105/tpc.109.070458openalex-snapshot
YABBYs and the Transcriptional Corepressors LEUNIG and LEUNIG_HOMOLOG Maintain Leaf Polarity and Meristem Activity inArabidopsis
inferredcites →https://doi.org/10.1105/tpc.13.3.627openalex-snapshot
Self-Incompatibility in the Genus Arabidopsis: Characterization of the S Locus in the Outcrossing A. lyrata and Its Autogamous Relative A. thaliana
inferredcites →https://doi.org/10.1105/tpc.17.00521openalex-snapshot
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
inferredcites →https://doi.org/10.1111/evo.12832openalex-snapshot
Irrational exuberance for resolved species trees
inferredcites →https://doi.org/10.1111/evo.13253openalex-snapshot
Multiple strong postmating and intrinsic postzygotic reproductive barriers isolate florally diverse species of Jaltomata (Solanaceae)
inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03605.xopenalex-snapshot
Independent origins of self‐compatibility in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04340.xopenalex-snapshot
Multiple features that distinguish unilateral incongruity and self-incompatibility in the tomato clade
inferredcites →https://doi.org/10.1111/j.1469-185x.2006.00005.xopenalex-snapshot
Coloured nectar: distribution, ecology, and evolution of an enigmatic floral trait
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03737.xopenalex-snapshot
Genetic control of plant organ growth
inferredcites →https://doi.org/10.1111/j.1558-5646.2007.00105.xopenalex-snapshot
THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/mec.14780openalex-snapshot
Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance
inferredcites →https://doi.org/10.1111/plb.12493openalex-snapshot
Organ boundary NAC‐domain transcription factors are implicated in the evolution of petal fusion
inferredcites →https://doi.org/10.1111/tpj.12625openalex-snapshot
SEUSS and SEUSS ‐ LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis
inferredcites →https://doi.org/10.1126/science.1143153openalex-snapshot
The Evolution of Selfing in Arabidopsis thaliana
inferredcites →https://doi.org/10.1126/science.1194513openalex-snapshot
Species Selection Maintains Self-Incompatibility
inferredcites →https://doi.org/10.1126/science.1251385openalex-snapshot
Comparative genomics reveals insights into avian genome evolution and adaptation
inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1126/science.aao0827openalex-snapshot
Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins
inferredcites →https://doi.org/10.1146/annurev.arplant.56.032604.144249openalex-snapshot
SELF-INCOMPATIBILITY IN PLANTS
inferredcites →https://doi.org/10.1186/1471-2105-5-1openalex-snapshot
PyEvolve: a toolkit for statistical modelling of molecular evolution
inferredcites →https://doi.org/10.1186/1471-2105-9-18openalex-snapshot
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
inferredcites →https://doi.org/10.1186/1471-2148-13-214openalex-snapshot
A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree
inferredcites →https://doi.org/10.1186/s12864-016-3412-9openalex-snapshot
Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data
inferredcites →https://doi.org/10.1186/s13227-017-0080-zopenalex-snapshot
Heterochronic developmental shifts underlie floral diversity within Jaltomata (Solanaceae)
inferredcites →https://doi.org/10.1242/dev.02498openalex-snapshot
APETALA1 and SEPALLATA3 interact with SEUSS to mediate transcription repression during flower development
inferredcites →https://doi.org/10.1242/dev.129.1.253openalex-snapshot
SEUSS , a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG
inferredcites →https://doi.org/10.1371/journal.pbio.1002224openalex-snapshot
The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds
inferredcites →https://doi.org/10.1371/journal.pbio.1002379openalex-snapshot
Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
inferredcites →https://doi.org/10.1600/036364411x553243openalex-snapshot
Color by Numbers: Nuclear Gene Phylogeny of Jaltomata (Solanaceae), Sister Genus to Solanum, Supports Three Clades Differing in Fruit Color
inferredcites →https://doi.org/10.2307/2419674openalex-snapshot
Phylogenetic Relationships in Solanum (Solanaceae) Based on ndhF Sequences

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/tax.12990zenodo-depositor-declared
Morphological trait evolution inSolanum(Solanaceae): Evolutionary lability of key taxonomic characters
inferred← citeshttps://doi.org/10.11646/phytotaxa.641.2.1zenodo-depositor-declared
Jaltomata tlaxcala, a new species of the genus Jaltomata (Solanaceae, Solanoideae, Solaneae)
inferred← citeshttps://doi.org/10.5091/plecevo.2020.1589zenodo-depositor-declared
Dracula’s mistress: removal of blood-red floral nectar results in secretion of more nectar
inferred← citeshttps://doi.org/10.1002/ajb2.1827openalex-snapshot
Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum
inferred← citeshttps://doi.org/10.1002/tax.70102openalex-snapshot
Incomplete lineage sorting and hybridization as sources of gene tree discordance among species of the Geminata clade of Solanum (Solanaceae)
inferred← citeshttps://doi.org/10.1002/tax.70129openalex-snapshot
A new phylogeny and phylogenetic classification for Solanaceae
inferred← citeshttps://doi.org/10.1002/tpg2.20223openalex-snapshot
Genome sequence for the blue‐flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae
inferred← citeshttps://doi.org/10.1007/978-3-030-29493-9_2openalex-snapshot
Biodiversity of Nicotiana (Solanaceae)
inferred← citeshttps://doi.org/10.1007/s00606-023-01883-xopenalex-snapshot
Genetics and evolutionary insights from Solanaceae genome sequences
inferred← citeshttps://doi.org/10.1007/s10722-024-01975-8openalex-snapshot
Leaf morphological variation of Jaltomata (Solanoideae: Solanaceae) in Mexico: usefulness in species recognition
inferred← citeshttps://doi.org/10.1016/j.ab.2020.113770openalex-snapshot
Impact of transposable elements on genome size variation between two closely related crustacean species
inferred← citeshttps://doi.org/10.1016/j.cell.2023.04.008openalex-snapshot
Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding
inferred← citeshttps://doi.org/10.1016/j.stress.2025.101171openalex-snapshot
Molecular and genetic innovations: Breaking barriers in Solanaceae stress resilience
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100595openalex-snapshot
Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100719openalex-snapshot
Molecular insights into self-incompatibility systems: From evolution to breeding
inferred← citeshttps://doi.org/10.1038/s41467-023-37133-4openalex-snapshot
Revealing evolution of tropane alkaloid biosynthesis by analyzing two genomes in the Solanaceae family
inferred← citeshttps://doi.org/10.1038/s41586-025-08619-6openalex-snapshot
Solanum pan-genetics reveals paralogues as contingencies in crop engineering
inferred← citeshttps://doi.org/10.1038/s41598-021-93495-zopenalex-snapshot
The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas
inferred← citeshttps://doi.org/10.1080/11263504.2022.2100499openalex-snapshot
Red nectar presentation and characterization of the breeding system of an Andean nightshade
inferred← citeshttps://doi.org/10.1080/11263504.2024.2395847openalex-snapshot
Within-flower anther polymorphism and the floral biology of Jaltomata antillana (solanaceae) of the Greater Antilles
inferred← citeshttps://doi.org/10.1093/molbev/msab089openalex-snapshot
Inferring the Genetic Basis of Sex Determination from the Genome of a Dioecious Nightshade
inferred← citeshttps://doi.org/10.1111/nph.15844openalex-snapshot
A simple genetic architecture and low constraint allow rapid floral evolution in a diverse and recently radiating plant genus
inferred← citeshttps://doi.org/10.1139/cjb-2022-0106openalex-snapshot
Delayed self-fertilization and chemical analysis of floral nectar of a perennial relative of the tomato and potato from Mexico
inferred← citeshttps://doi.org/10.3390/d17020136openalex-snapshot
Nuclear Phylogenomics of Angiosperms and Evolutionary Implications
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.