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Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/9781118951446.ch9openalex-snapshot

Signaling pathways driving the development of ectomycorrhizal symbiosis

inferredcites →https://doi.org/10.1007/978-3-319-56363-3_6openalex-snapshot

Ectomycorrhizal Fungal Lineages: Detection of Four New Groups and Notes on Consistent Recognition of Ectomycorrhizal Taxa in High-Throughput Sequencing Studies

inferredcites →https://doi.org/10.1007/s00572-010-0320-8openalex-snapshot

Tree age influences on the development of edible ectomycorrhizal fungi sporocarps in Pinus sylvestris stands

inferredcites →https://doi.org/10.1007/s00572-020-01001-6openalex-snapshot

Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptome

inferredcites →https://doi.org/10.1007/s005720050172openalex-snapshot

Interactions between Pisolithus tinctorius and its hosts: a review of current knowledge

inferredcites →https://doi.org/10.1007/s005720100108openalex-snapshot

Exploration types of ectomycorrhizae

inferredcites →https://doi.org/10.1007/s10021-019-00440-3openalex-snapshot

Accounting for Carbon Flux to Mycorrhizal Fungi May Resolve Discrepancies in Forest Carbon Budgets

inferredcites →https://doi.org/10.1007/s11104-013-1630-3openalex-snapshot

The production and turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils: role in carbon cycling

inferredcites →https://doi.org/10.1007/s13225-012-0211-8openalex-snapshot

Borofutus, a new genus of Boletaceae from tropical Asia: phylogeny, morphology and taxonomy

inferredcites →https://doi.org/10.1007/s13225-016-0375-8openalex-snapshot

One hundred noteworthy boletes from China

inferredcites →https://doi.org/10.1016/j.coal.2018.11.003openalex-snapshot

Trehalose, mannitol and arabitol as indicators of fungal metabolism in Late Cretaceous and Miocene deposits

inferredcites →https://doi.org/10.1016/j.cub.2011.05.033openalex-snapshot

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

inferredcites →https://doi.org/10.1016/j.cub.2011.06.044openalex-snapshot

A Secreted Fungal Effector of Glomus intraradices Promotes Symbiotic Biotrophy

inferredcites →https://doi.org/10.1017/s0953756201005044openalex-snapshot

ITS–RFLP and ITS sequence diversity in Pisolithus from central and eastern Australian sclerophyll forests

inferredcites →https://doi.org/10.1017/s0953756202005919openalex-snapshot

Ectomycorrhizal fungi and their leguminous hosts in the Pakaraima Mountains of Guyana

inferredcites →https://doi.org/10.1038/ismej.2017.116openalex-snapshot

Role of plant–fungal nutrient trading and host control in determining the competitive success of ectomycorrhizal fungi

inferredcites →https://doi.org/10.1038/nature06556openalex-snapshot

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

inferredcites →https://doi.org/10.1038/nature12901openalex-snapshot

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/ncomms13188openalex-snapshot

The fungal-specific β-glucan-binding lectin FGB1 alters cell-wall composition and suppresses glucan-triggered immunity in plants

inferredcites →https://doi.org/10.1038/ng.3223openalex-snapshot

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot

Phased diploid genome assembly with single-molecule real-time sequencing

inferredcites →https://doi.org/10.1038/nrmicro.2016.149openalex-snapshot

Unearthing the roots of ectomycorrhizal symbioses

inferredcites →https://doi.org/10.1038/s41396-018-0342-3openalex-snapshot

Dual RNA-seq reveals large-scale non-conserved genotype × genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis

inferredcites →https://doi.org/10.1038/s41396-021-01159-7openalex-snapshot

Forest tree growth is linked to mycorrhizal fungal composition and function across Europe

inferredcites →https://doi.org/10.1038/s41467-018-04140-9openalex-snapshot

An effector from the Huanglongbing-associated pathogen targets citrus proteases

inferredcites →https://doi.org/10.1038/s41467-018-07849-9openalex-snapshot

Contemporaneous radiations of fungi and plants linked to symbiosis

inferredcites →https://doi.org/10.1038/s41467-020-18795-wopenalex-snapshot

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

inferredcites →https://doi.org/10.1038/s41559-018-0710-4openalex-snapshot

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

inferredcites →https://doi.org/10.1038/s41586-018-0030-5openalex-snapshot

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

inferredcites →https://doi.org/10.1038/s41598-018-32825-0openalex-snapshot

A rust fungal effector binds plant DNA and modulates transcription

inferredcites →https://doi.org/10.1046/j.0028-646x.2001.00313.xopenalex-snapshot

Phylogeography of the ectomycorrhizal Pisolithus species as inferred from nuclear ribosomal DNA ITS sequences

inferredcites →https://doi.org/10.1046/j.1469-8137.2002.00417.xopenalex-snapshot

Extramatrical ectomycorrhizal mycelium contributes one‐third of microbial biomass and produces, together with associated roots, half the dissolved organic carbon in a forest soil

inferredcites →https://doi.org/10.1073/pnas.1322671111openalex-snapshot

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

inferredcites →https://doi.org/10.1073/pnas.1807297116openalex-snapshot

Conserved fungal effector suppresses PAMP-triggered immunity by targeting plant immune kinases

inferredcites →https://doi.org/10.1073/pnas.1922539117openalex-snapshot

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/bioinformatics/btv562openalex-snapshot

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests

inferredcites →https://doi.org/10.1093/dnares/dsaa011openalex-snapshot

Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msy179openalex-snapshot

Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita

inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1093/nar/gkt1099openalex-snapshot

PATRIC, the bacterial bioinformatics database and analysis resource

inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot

The carbohydrate-active enzymes database (CAZy) in 2013

inferredcites →https://doi.org/10.1093/nar/gkt1183openalex-snapshot

MycoCosm portal: gearing up for 1000 fungal genomes

inferredcites →https://doi.org/10.1093/nar/gku1179openalex-snapshot

Gene Ontology Consortium: going forward

inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot

The Pfam protein families database: towards a more sustainable future

inferredcites →https://doi.org/10.1094/mpmi-01-15-0003-ropenalex-snapshot

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments

inferredcites →https://doi.org/10.1094/mpmi-01-19-0007-ropenalex-snapshot

Protein Arginine Methyltransferase Expression Affects Ectomycorrhizal Symbiosis and the Regulation of Hormone Signaling Pathways

inferredcites →https://doi.org/10.1094/mpmi-05-14-0129-fiopenalex-snapshot

The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses

inferredcites →https://doi.org/10.1094/mpmi-10-15-0234-ropenalex-snapshot

Strigolactone-Induced Putative Secreted Protein 1 Is Required for the Establishment of Symbiosis by the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis

inferredcites →https://doi.org/10.1094/mpmi.2004.17.2.202openalex-snapshot

Transcriptional Responses of Paxillus involutus and Betula pendula During Formation of Ectomycorrhizal Root Tissue

inferredcites →https://doi.org/10.1099/mgen.0.000243openalex-snapshot

Pan-genome analyses of model fungal species

inferredcites →https://doi.org/10.1101/2021.02.23.432530openalex-snapshot

Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement?

inferredcites →https://doi.org/10.1104/pp.118.2.627openalex-snapshot

Carbohydrate and Amino Acid Metabolism in the Eucalyptus globulus-Pisolithus tinctorius Ectomycorrhiza during Glucose Utilization

inferredcites →https://doi.org/10.1111/1462-2920.14959openalex-snapshot

The small secreted effector protein MiSSP7.6 of Laccaria bicolor is required for the establishment of ectomycorrhizal symbiosis

inferredcites →https://doi.org/10.1111/1462-2920.15320openalex-snapshot

Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus

inferredcites →https://doi.org/10.1111/1462-2920.15554openalex-snapshot

Comparative genomics reveals a core gene toolbox for lifestyle transitions in Hypocreales fungi

inferredcites →https://doi.org/10.1111/ele.12631openalex-snapshot

Ectomycorrhizal fungi slow soil carbon cycling

inferredcites →https://doi.org/10.1111/j.1365-294x.1993.tb00005.xopenalex-snapshot

ITS primers with enhanced specificity for basidiomycetes ‐ application to the identification of mycorrhizae and rusts

inferredcites →https://doi.org/10.1111/j.1469-8137.2004.01090.xopenalex-snapshot

Evolution and host specificity in the ectomycorrhizal genusLeccinum

inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01441.xopenalex-snapshot

Spatial patterns of gene expression in the extramatrical mycelium and mycorrhizal root tips formed by the ectomycorrhizal fungus Paxillus involutus in association with birch ( Betula pendula ) seedlings in soil microcosms

inferredcites →https://doi.org/10.1111/j.1469-8137.2007.01983.xopenalex-snapshot

Increased trehalose biosynthesis in Hartig net hyphae of ectomycorrhizas

inferredcites →https://doi.org/10.1111/nph.13103openalex-snapshot

The effect of elevated carbon dioxide on the interaction between E ucalyptus grandisand diverse isolates of P isolithussp. is associated with a complex shift in the root transcriptome

inferredcites →https://doi.org/10.1111/nph.13288openalex-snapshot

Mycorrhizal ecology and evolution: the past, the present, and the future

inferredcites →https://doi.org/10.1111/nph.14976openalex-snapshot

Evolutionary history of mycorrhizal symbioses and global host plant diversity

inferredcites →https://doi.org/10.1111/nph.15076openalex-snapshot

The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics

inferredcites →https://doi.org/10.1111/nph.15687openalex-snapshot

Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

inferredcites →https://doi.org/10.1111/nph.15698openalex-snapshot

Timing of evolutionary innovation: scenarios of evolutionary diversification in a species‐rich fungal clade, Boletales

inferredcites →https://doi.org/10.1111/nph.16322openalex-snapshot

Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer

inferredcites →https://doi.org/10.1111/nph.16759openalex-snapshot

Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root cells and promotes root colonization

inferredcites →https://doi.org/10.1111/nph.17160openalex-snapshot

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

inferredcites →https://doi.org/10.1111/nph.17858openalex-snapshot

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

inferredcites →https://doi.org/10.1111/nph.17892openalex-snapshot

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

inferredcites →https://doi.org/10.1111/pce.13702openalex-snapshot

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots

inferredcites →https://doi.org/10.1126/science.1231923openalex-snapshot

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

inferredcites →https://doi.org/10.1126/science.aad4501openalex-snapshot

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

inferredcites →https://doi.org/10.1126/science.aai8212openalex-snapshot

Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics

inferredcites →https://doi.org/10.1126/science.aba1223openalex-snapshot

How mycorrhizal associations drive plant population and community biology

inferredcites →https://doi.org/10.1128/mbio.00636-18openalex-snapshot

Comparative Genomics Reveals the Core Gene Toolbox for the Fungus-Insect Symbiosis

inferredcites →https://doi.org/10.1146/annurev-ecolsys-012021-114902openalex-snapshot

Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems

inferredcites →https://doi.org/10.11646/phytotaxa.348.3.1openalex-snapshot

Two new species of Pisolithus (Sclerodermataceae) from Australasia, and an assessment of the confused nomenclature of P. tinctorius

inferredcites →https://doi.org/10.1186/1471-2105-4-41openalex-snapshot

The COG database: an updated version includes eukaryotes

inferredcites →https://doi.org/10.1186/s12862-018-1229-7openalex-snapshot

Evolutionary dynamics of host specialization in wood-decay fungi

inferredcites →https://doi.org/10.1186/s12864-016-2491-yopenalex-snapshot

Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

inferredcites →https://doi.org/10.1186/s12864-020-06806-5openalex-snapshot

Oak displays common local but specific distant gene regulation responses to different mycorrhizal fungi

inferredcites →https://doi.org/10.1186/s12915-020-0744-3openalex-snapshot

A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1186/s13068-018-1198-5openalex-snapshot

Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

inferredcites →https://doi.org/10.1371/journal.pgen.1006348openalex-snapshot

Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus

inferredcites →https://doi.org/10.1371/journal.pgen.1007742openalex-snapshot

Correction: Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus

inferredcites →https://doi.org/10.1371/journal.pone.0132628openalex-snapshot

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing

inferredcites →https://doi.org/10.1371/journal.pone.0175528openalex-snapshot

The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown

inferredcites →https://doi.org/10.3389/fmicb.2015.01278openalex-snapshot

Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins

inferredcites →https://doi.org/10.3389/fmicb.2016.01335openalex-snapshot

Visual Comparative Omics of Fungi for Plant Biomass Deconstruction

inferredcites →https://doi.org/10.3389/fmicb.2022.839524openalex-snapshot

Pangenome Analysis of the Soilborne Fungal Phytopathogen Rhizoctonia solani and Development of a Comprehensive Web Resource: RsolaniDB

inferredcites →https://doi.org/10.3390/biology9090294openalex-snapshot

A Poplar Rust Effector Protein Associates with Protein Disulfide Isomerase and Enhances Plant Susceptibility

inferredcites →https://doi.org/10.3732/ajb.94.10.1630openalex-snapshot

Cryptic species and host specificity in the ectomycorrhizal genus Strobilomyces (Strobilomycetaceae)

inferredcites →https://doi.org/10.5248/120.195openalex-snapshot

Pisolithus: a new species from southeast Asia and a new combination

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Updates of Scleroderma (Basidiomycota, Boletales): new data from 18 selected species in China

inferred← citeshttps://doi.org/10.1007/978-3-031-75666-5_11openalex-snapshot

General Trends of Genomic Signatures of the Ectomycorrhizal Symbiosis in Fungi: A Comparison Across Multiple Lineages

inferred← citeshttps://doi.org/10.1007/s00572-024-01137-9openalex-snapshot

Sesquiterpenes of the ectomycorrhizal fungus Pisolithus microcarpus alter root growth and promote host colonization

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Spatially Well Structured Mangroves Fish Communities of the Persian Gulf; a Functional Perspective

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Phosphorus availability influences potassium chemistries in the ectomycorrhizal fungi Pisolithus tinctorius and Paxillus ammoniavirescens

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Lessons from mycorrhizal Synergies: Broad-Leaved trees Boost Chinese fir resilience

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Endophytic fungi in grasses: Panomics-driven mechanisms of combined abiotic stress tolerance and climate-smart pasture improvement

inferred← citeshttps://doi.org/10.1038/s41564-023-01448-1openalex-snapshot

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

inferred← citeshttps://doi.org/10.1038/s44358-025-00107-zopenalex-snapshot

The biodiversity, genomics, ecology and evolution of mushroom-forming fungi

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Computer-aided, resistance gene-guided genome mining for proteasome and HMG-CoA reductase inhibitors

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From populations to pan-genomes: investigating the role of ecology and genomic architecture in maintaining species boundaries in the porcini mushroom, Boletus edulis

inferred← citeshttps://doi.org/10.1101/2025.04.11.648352openalex-snapshot

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

inferred← citeshttps://doi.org/10.1111/nph.19400openalex-snapshot

Fungal metabolism and free amino acid content may predict nitrogen transfer to the host plant in the ectomycorrhizal relationship between Pisolithus spp. and Eucalyptus grandis

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The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application

inferred← citeshttps://doi.org/10.1111/nph.70315openalex-snapshot

Elevated CO2 mediates ectomycorrhizal fungi species‐specific decreases of native soil carbon and causes negative priming under low nutrients

inferred← citeshttps://doi.org/10.1111/nph.70395openalex-snapshot

Genetic variation among progeny shapes symbiosis in a basidiomycete with poplar

inferred← citeshttps://doi.org/10.1111/tpj.70352openalex-snapshot

Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility

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Polyketide synthase gene clusters in the ericoid mycorrhizal fungus Oidiodendron maius: genome-wide prediction, expression profiling, and functional characterization of knockout mutants

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Ectomycorrhizal Community Shifts at a Former Uranium Mining Site

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