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Phylogenetic-Signal Dissection of Nuclear Housekeeping Genes Supports the Paraphyly of Sponges and the Monophyly of Eumetazoa

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.080058openalex-snapshot

The Homoscleromorph sponge Oscarella lobularis , a promising sponge model in evolutionary and developmental biology

inferredcites →https://doi.org/10.1006/jtbi.1999.0999openalex-snapshot

Testing the Phylogenetic Stability of Early Tetrapods

inferredcites →https://doi.org/10.1007/0-387-27733-1_16openalex-snapshot

Posterior Mapping and Posterior Predictive Distributions

inferredcites →https://doi.org/10.1007/pl00006353openalex-snapshot

Phylogenetic Position of the Hexactinellida Within the Phylum Porifera Based on the Amino Acid Sequence of the Protein Kinase C from Rhabdocalyptus dawsoni

inferredcites →https://doi.org/10.1007/s00427-002-0272-xopenalex-snapshot

The ancestral role of Brachyury: expression of NemBra1 in the basal cnidarian Nematostella vectensis (Anthozoa)

inferredcites →https://doi.org/10.1007/s10441-007-9015-8openalex-snapshot

Congruence of Morphological and Molecular Phylogenies

inferredcites →https://doi.org/10.1016/j.cub.2007.03.008openalex-snapshot

The NK Homeobox Gene Cluster Predates the Origin of Hox Genes

inferredcites →https://doi.org/10.1016/j.cub.2008.09.016openalex-snapshot

Animal Evolution: Trichoplax, Trees, and Taxonomic Turmoil

inferredcites →https://doi.org/10.1016/j.cub.2009.02.052openalex-snapshot

Phylogenomics Revives Traditional Views on Deep Animal Relationships

inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot

Phylogenomics: the beginning of incongruence?

inferredcites →https://doi.org/10.1016/j.ympev.2004.02.021openalex-snapshot

Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution

inferredcites →https://doi.org/10.1016/j.ympev.2004.08.019openalex-snapshot

An evaluation of support for order-level monophyly and interrelationships within the class Demospongiae using partial data from the large subunit rDNA and cytochrome oxidase subunit I

inferredcites →https://doi.org/10.1016/j.ympev.2006.04.016openalex-snapshot

Non-monophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA

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Reassessment of the classification of the Order Haplosclerida (Class Demospongiae, Phylum Porifera) using 18S rRNA gene sequence data

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Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data

inferredcites →https://doi.org/10.1016/s0248-4900(97)86829-3openalex-snapshot

Type IV collagen in sponges, the missing link in basement membrane ubiquity*

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Broad phylogenomic sampling improves resolution of the animal tree of life

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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

inferredcites →https://doi.org/10.1038/nature07191openalex-snapshot

The Trichoplax genome and the nature of placozoans

inferredcites →https://doi.org/10.1038/nature07415openalex-snapshot

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

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Sponge paraphyly and the origin of Metazoa

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Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences

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Estimating metazoan divergence times with a molecular clock

inferredcites →https://doi.org/10.1073/pnas.0503660102openalex-snapshot

Origin of the Eumetazoa: Testing ecological predictions of molecular clocks against the Proterozoic fossil record

inferredcites →https://doi.org/10.1073/pnas.0602076103openalex-snapshot

Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum

inferredcites →https://doi.org/10.1073/pnas.0801667105openalex-snapshot

Molecular phylogeny of choanoflagellates, the sister group to Metazoa

inferredcites →https://doi.org/10.1073/pnas.171316998openalex-snapshot

Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA

inferredcites →https://doi.org/10.1073/pnas.95.26.15458openalex-snapshot

Evaluating multiple alternative hypotheses for the origin of Bilateria: An analysis of 18S rRNA molecular evidence

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Bayes Factors

inferredcites →https://doi.org/10.1080/10635150290102339openalex-snapshot

Increased Taxon Sampling Greatly Reduces Phylogenetic Error

inferredcites →https://doi.org/10.1080/10635150309322openalex-snapshot

Phylogeny and Evolution of Calcareous Sponges: Monophyly of Calcinea and Calcaronea, High Level of Morphological Homoplasy, and the Primitive Nature of Axial Symmetry

inferredcites →https://doi.org/10.1080/10635150390132911openalex-snapshot

Is Sparse Taxon Sampling a Problem for Phylogenetic Inference?

inferredcites →https://doi.org/10.1080/10635150490264699openalex-snapshot

Bayesian Phylogenetic Analysis of Combined Data

inferredcites →https://doi.org/10.1080/10635150490888877openalex-snapshot

Identifying and Removing Fast-Evolving Sites Using Compatibility Analysis: An Example from the Arthropoda

inferredcites →https://doi.org/10.1080/10635150600899780openalex-snapshot

Statistical Methods in Molecular Evolution

inferredcites →https://doi.org/10.1080/10635150802161088openalex-snapshot

Phylogeny and Evolution of Glass Sponges (Porifera, Hexactinellida)

inferredcites →https://doi.org/10.1080/106351598260996openalex-snapshot

Is It Better to Add Taxa or Characters to a Difficult Phylogenetic Problem?

inferredcites →https://doi.org/10.1093/bioinformatics/16.5.486openalex-snapshot

RadCon: phylogenetic tree comparison and consensus

inferredcites →https://doi.org/10.1093/bioinformatics/18.3.502openalex-snapshot

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/bti191openalex-snapshot

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot

A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process

inferredcites →https://doi.org/10.1093/molbev/msm070openalex-snapshot

Glass Sponges and Bilaterian Animals Share Derived Mitochondrial Genomic Features: A Common Ancestry or Parallel Evolution?

inferredcites →https://doi.org/10.1093/molbev/msn006openalex-snapshot

A Phylogenomic Investigation into the Origin of Metazoa

inferredcites →https://doi.org/10.1093/molbev/msn018openalex-snapshot

A Site- and Time-Heterogeneous Model of Amino Acid Replacement

inferredcites →https://doi.org/10.1093/molbev/msn047openalex-snapshot

Genesis and Expansion of Metazoan Transcription Factor Gene Classes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025604openalex-snapshot

Majority-rule reduced consensus trees and their use in bootstrapping

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026166openalex-snapshot

Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies

inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

inferredcites →https://doi.org/10.1101/gr.8.6.590openalex-snapshot

Large-Scale Taxonomic Profiling of Eukaryotic Model Organisms: A Comparison of Orthologous Proteins Encoded by the Human, Fly, Nematode, and Yeast Genomes

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Cladistic analyses of the animal kingdom

inferredcites →https://doi.org/10.1111/j.1096-0031.1998.tb00338.xopenalex-snapshot

Phylogeny of the Metazoa Based on Morphological and 18S Ribosomal DNA Evidence

inferredcites →https://doi.org/10.1111/j.1096-0031.2004.00041.xopenalex-snapshot

The phylogenetic position of the comb jellies (Ctenophora) and the importance of taxonomic sampling

inferredcites →https://doi.org/10.1111/j.1525-142x.2007.00179.xopenalex-snapshot

Poriferan ANTP genes: primitively simple or secondarily reduced?

inferredcites →https://doi.org/10.1111/j.1525-142x.2008.00231.xopenalex-snapshot

Six major steps in animal evolution: are we derived sponge larvae?

inferredcites →https://doi.org/10.1111/j.1525-142x.2008.00302.xopenalex-snapshot

The deep evolution of metazoan microRNAs

inferredcites →https://doi.org/10.1111/j.1744-7410.2003.tb00084.xopenalex-snapshot

Larval development in the Homoscleromorpha (Porifera, Demospongiae)

inferredcites →https://doi.org/10.1111/j.2517-6161.1974.tb00994.xopenalex-snapshot

Cross-Validatory Choice and Assessment of Statistical Predictions

inferredcites →https://doi.org/10.1126/science.1139158openalex-snapshot

Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

inferredcites →https://doi.org/10.1126/science.1142024openalex-snapshot

Buddenbrockia Is a Cnidarian Worm

inferredcites →https://doi.org/10.1139/z96-231openalex-snapshot

Sponge phylogeny, animal monophyly, and the origin of the nervous system: 18S rRNA evidence

inferredcites →https://doi.org/10.1144/sp286.25openalex-snapshot

Poriferan paraphyly and its implications for Precambrian palaeobiology

inferredcites →https://doi.org/10.1186/1471-2148-6-29openalex-snapshot

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

inferredcites →https://doi.org/10.1186/1471-2148-7-33openalex-snapshot

Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

inferredcites →https://doi.org/10.1186/gb-2006-7-7-r64openalex-snapshot

The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis

inferredcites →https://doi.org/10.1242/dev.01119openalex-snapshot

Investigating the origins of triploblasty: `mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa)

inferredcites →https://doi.org/10.1371/journal.pbio.1000020openalex-snapshot

Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis

inferredcites →https://doi.org/10.1371/journal.pbio.1000131openalex-snapshot

Management Effectiveness of the World's Marine Fisheries

inferredcites →https://doi.org/10.1666/0094-8373(2005)031[0036:tamoea]2.0.co;2openalex-snapshot

Tempo and mode of early animal evolution: inferences from rocks, Hox, and molecular clocks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1080/00222933.2014.963184zenodo-depositor-declared

A review on deep molluscan phylogeny: old markers, integrative approaches, persistent problems

inferred← citeshttps://doi.org/10.1002/9780470015902.a0001582.pub2openalex-snapshot

Porifera (Sponges): Recent Knowledge and New Perspectives

inferred← citeshttps://doi.org/10.1002/9780470015902.a0022853openalex-snapshot

Animals and Their Unicellular Ancestors

inferred← citeshttps://doi.org/10.1002/bies.201700237openalex-snapshot

Understanding Animal Evolution: The Added Value of Sponge Transcriptomics and Genomics

inferred← citeshttps://doi.org/10.1002/ece3.1381openalex-snapshot

Discordance between morphological and molecular species boundaries among Caribbean species of the reef sponge Callyspongia

inferred← citeshttps://doi.org/10.1002/jez.b.21442openalex-snapshot

Epithelia, an Evolutionary Novelty of Metazoans

inferred← citeshttps://doi.org/10.1002/jez.b.22485openalex-snapshot

The Identification of MicroRNAs in Calcisponges: Independent Evolution of MicroRNAs in Basal Metazoans

inferred← citeshttps://doi.org/10.1002/spp2.1412openalex-snapshot

An early Cambrian mackenziid reveals links to modular Ediacaran macro‐organisms

inferred← citeshttps://doi.org/10.1007/978-1-0716-2691-7_8openalex-snapshot

Testing Phylogenetic Stability with Variable Taxon Sampling

inferred← citeshttps://doi.org/10.1007/978-3-030-30363-1_7openalex-snapshot

A Look Back Over 20 Years of Evo-Devo Studies on Sponges: A Challenged View of Urmetazoa

inferred← citeshttps://doi.org/10.1007/978-3-642-36002-2_3openalex-snapshot

Invertebrate and Vertebrate Collagens

inferred← citeshttps://doi.org/10.1007/978-3-7091-1862-7_4openalex-snapshot

Porifera

inferred← citeshttps://doi.org/10.1007/978-94-007-0114-4_18openalex-snapshot

Invertebrates and Their Roles in Coral Reef Ecosystems

inferred← citeshttps://doi.org/10.1007/978-94-007-4688-6_2openalex-snapshot

No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera

inferred← citeshttps://doi.org/10.1007/978-94-007-4688-6_3openalex-snapshot

Molecular phylogeny of glass sponges (Porifera, Hexactinellida): increased taxon sampling and inclusion of the mitochondrial protein-coding gene, cytochrome oxidase subunit I

inferred← citeshttps://doi.org/10.1007/978-94-007-4688-6_7openalex-snapshot

The complete mitochondrial genome of the verongid sponge Aplysina cauliformis: implications for DNA barcoding in demosponges

inferred← citeshttps://doi.org/10.1007/978-94-017-9642-2_2openalex-snapshot

Fossil and Transcriptomic Perspectives on the Origins and Success of Metazoan Multicellularity

inferred← citeshttps://doi.org/10.1007/978-94-017-9642-2_3openalex-snapshot

Origin of Metazoan Developmental Toolkits and Their Expression in the Fossil Record

inferred← citeshttps://doi.org/10.1007/978-94-017-9642-2_5openalex-snapshot

Choanoflagellates: Perspective on the Origin of Animal Multicellularity

inferred← citeshttps://doi.org/10.1007/s00114-014-1176-0openalex-snapshot

First report of fossil “keratose” demosponges in Phanerozoic carbonates: preservation and 3-D reconstruction

inferred← citeshttps://doi.org/10.1007/s00239-010-9398-zopenalex-snapshot

Automated Removal of Noisy Data in Phylogenomic Analyses

inferred← citeshttps://doi.org/10.1007/s00427-010-0344-2openalex-snapshot

Expansion, diversification, and expression of T-box family genes in Porifera

inferred← citeshttps://doi.org/10.1007/s00427-012-0399-3openalex-snapshot

Cellular and molecular processes leading to embryo formation in sponges: evidences for high conservation of processes throughout animal evolution

inferred← citeshttps://doi.org/10.1007/s10750-011-0727-zopenalex-snapshot

Molecular phylogeny of glass sponges (Porifera, Hexactinellida): increased taxon sampling and inclusion of the mitochondrial protein-coding gene, cytochrome oxidase subunit I

inferred← citeshttps://doi.org/10.1007/s10750-011-0842-xopenalex-snapshot

No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera

inferred← citeshttps://doi.org/10.1007/s10750-011-0879-xopenalex-snapshot

The complete mitochondrial genome of the verongid sponge Aplysina cauliformis: implications for DNA barcoding in demosponges

inferred← citeshttps://doi.org/10.1007/s11434-013-0099-zopenalex-snapshot

Tetraradial symmetry in early poriferans

inferred← citeshttps://doi.org/10.1007/s13127-011-0044-4openalex-snapshot

Higher-level metazoan relationships: recent progress and remaining questions

inferred← citeshttps://doi.org/10.1007/s13127-020-00460-1openalex-snapshot

Kinetid in larval cells of Spongillida (Porifera: Demospongiae): tracing the ancestral traits

inferred← citeshttps://doi.org/10.1016/b978-0-08-095975-7.01310-3openalex-snapshot

Oxygen and Early Animal Evolution

inferred← citeshttps://doi.org/10.1016/b978-0-12-387787-1.00007-6openalex-snapshot

Deep Phylogeny and Evolution of Sponges (Phylum Porifera)

inferred← citeshttps://doi.org/10.1016/b978-0-12-387787-1.00010-6openalex-snapshot

Sponge Systematics Facing New Challenges

inferred← citeshttps://doi.org/10.1016/b978-0-12-800049-6.00270-5openalex-snapshot

Metazoans, Origins of

inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00167-1openalex-snapshot

Metazoans, Origins of

inferred← citeshttps://doi.org/10.1016/j.cub.2010.11.061openalex-snapshot

Model Systems of Invertebrate Allorecognition

inferred← citeshttps://doi.org/10.1016/j.epsl.2013.04.003openalex-snapshot

A basin redox transect at the dawn of animal life

inferred← citeshttps://doi.org/10.1016/j.margen.2015.07.008openalex-snapshot

Comparative analyses of developmental transcription factor repertoires in sponges reveal unexpected complexity of the earliest animals

inferred← citeshttps://doi.org/10.1016/j.palwor.2014.11.006openalex-snapshot

New articulated protospongiid sponges from the early Cambrian Chengjiang biota

inferred← citeshttps://doi.org/10.1016/j.palwor.2015.03.004openalex-snapshot

Early divergence dates of demosponges based on mitogenomics and evaluated fossil calibrations

inferred← citeshttps://doi.org/10.1016/j.semcdb.2018.09.006openalex-snapshot

Mesothelial-mesenchymal transitions in embryogenesis

inferred← citeshttps://doi.org/10.1016/j.tig.2011.02.003openalex-snapshot

Improving animal phylogenies with genomic data

inferred← citeshttps://doi.org/10.1016/j.virol.2011.03.021openalex-snapshot

Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning

inferred← citeshttps://doi.org/10.1016/j.ympev.2010.05.028openalex-snapshot

Polyphyly of the genus Axinella and of the family Axinellidae (Porifera: Demospongiaep)

inferred← citeshttps://doi.org/10.1016/j.ympev.2011.08.028openalex-snapshot

Resolving phylogenetic signal from noise when divergence is rapid: A new look at the old problem of echinoderm class relationships

inferred← citeshttps://doi.org/10.1016/j.ympev.2011.09.016openalex-snapshot

Congruence between nuclear and mitochondrial genes in Demospongiae: A new hypothesis for relationships within the G4 clade (Porifera: Demospongiae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.02.008openalex-snapshot

ALG11 – A new variable DNA marker for sponge phylogeny: Comparison of phylogenetic performances with the 18S rDNA and the COI gene

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.016openalex-snapshot

Nearly complete rRNA genes from 371 Animalia: Updated structure-based alignment and detailed phylogenetic analysis

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.028openalex-snapshot

Chasing the urmetazoon: Striking a blow for quality data?

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.11.017openalex-snapshot

Mitogenomics does not resolve deep molluscan relationships (yet?)

inferred← citeshttps://doi.org/10.1016/j.ympev.2013.01.010openalex-snapshot

Deep metazoan phylogeny: When different genes tell different stories

inferred← citeshttps://doi.org/10.1016/j.ympev.2013.07.016openalex-snapshot

Mitogenomics at the base of Metazoa

inferred← citeshttps://doi.org/10.1016/j.zool.2010.10.003openalex-snapshot

What sponges can tell us about the evolution of developmental processes

inferred← citeshttps://doi.org/10.1017/s0025315412001300openalex-snapshot

Reproductive cycle and larval characteristics of the sponge Haliclona indistincta (Porifera: Demospongiae)

inferred← citeshttps://doi.org/10.1038/nature09201openalex-snapshot

The Amphimedon queenslandica genome and the evolution of animal complexity

inferred← citeshttps://doi.org/10.1038/s41467-019-10244-7openalex-snapshot

Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida

inferred← citeshttps://doi.org/10.1038/s41467-021-22074-7openalex-snapshot

Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding

inferred← citeshttps://doi.org/10.1038/s41598-017-05604-6openalex-snapshot

Discovery of missing link between demosponges and hexactinellids confirms palaeontological model of sponge evolution

inferred← citeshttps://doi.org/10.1038/srep08527openalex-snapshot

Higher-level phylogeny of paraneopteran insects inferred from mitochondrial genome sequences

inferred← citeshttps://doi.org/10.1038/srep41005openalex-snapshot

Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae)

inferred← citeshttps://doi.org/10.1038/srep42945openalex-snapshot

Siliceous spicules in a vauxiid sponge (Demospongia) from the Kaili Biota(Cambrian Stage 5), Guizhou, South China

inferred← citeshttps://doi.org/10.1073/pnas.1105499108openalex-snapshot

MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda

inferred← citeshttps://doi.org/10.1073/pnas.1204609109openalex-snapshot

Metazoan opsin evolution reveals a simple route to animal vision

inferred← citeshttps://doi.org/10.1073/pnas.1503453112openalex-snapshot

Error, signal, and the placement of Ctenophora sister to all other animals

inferred← citeshttps://doi.org/10.1073/pnas.2014393117openalex-snapshot

Ediacaran sponges, animal biomineralization, and skeletal reefs

inferred← citeshttps://doi.org/10.1093/bfgp/ely004openalex-snapshot

ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation

inferred← citeshttps://doi.org/10.1093/biosci/biu099openalex-snapshot

Macroevolution of Animal Body Plans: Is There Science after the Tree?

inferred← citeshttps://doi.org/10.1093/gbe/evaa015openalex-snapshot

A Novel Approach to Investigate the Effect of Tree Reconstruction Artifacts in Single-Gene Analysis Clarifies Opsin Evolution in Nonbilaterian Metazoans

inferred← citeshttps://doi.org/10.1093/gbe/evq016openalex-snapshot

Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm

inferred← citeshttps://doi.org/10.1093/gbe/evq030openalex-snapshot

Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda

inferred← citeshttps://doi.org/10.1093/gbe/evv091openalex-snapshot

The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa

inferred← citeshttps://doi.org/10.1093/gbe/evw086openalex-snapshot

Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models

inferred← citeshttps://doi.org/10.1093/gbe/evz097openalex-snapshot

Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling

inferred← citeshttps://doi.org/10.1093/icb/ict008openalex-snapshot

Novel Scenarios of Early Animal Evolution--Is It Time to Rewrite Textbooks?

inferred← citeshttps://doi.org/10.1093/icb/ict065openalex-snapshot

Molecular Phylogenies Support Homoplasy of Multiple Morphological Characters Used in the Taxonomy of Heteroscleromorpha (Porifera: Demospongiae)

inferred← citeshttps://doi.org/10.1093/icb/ict078openalex-snapshot

Phylogeny and Systematics of Demospongiae in Light of New Small-Subunit Ribosomal DNA (18S) Sequences

inferred← citeshttps://doi.org/10.1093/molbev/msq174openalex-snapshot

Demosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans

inferred← citeshttps://doi.org/10.1093/molbev/msr065openalex-snapshot

The Evolutionary History of YAP and the Hippo/YAP Pathway

inferred← citeshttps://doi.org/10.1093/molbev/mss060openalex-snapshot

Origin and Evolution of Laminin Gene Family Diversity

inferred← citeshttps://doi.org/10.1093/molbev/mss208openalex-snapshot

Impact of Missing Data on Phylogenies Inferred from Empirical Phylogenomic Data Sets

inferred← citeshttps://doi.org/10.1093/molbev/mss274openalex-snapshot

Mitochondrial DNA of Clathrina clathrus (Calcarea, Calcinea): Six Linear Chromosomes, Fragmented rRNAs, tRNA Editing, and a Novel Genetic Code

inferred← citeshttps://doi.org/10.1093/molbev/msu265openalex-snapshot

Structural Molecular Components of Septate Junctions in Cnidarians Point to the Origin of Epithelial Junctions in Eukaryotes

inferred← citeshttps://doi.org/10.1093/molbev/msw043openalex-snapshot

LS³: A Method for Improving Phylogenomic Inferences When Evolutionary Rates Are Heterogeneous among Taxa

inferred← citeshttps://doi.org/10.1093/sysbio/sys070openalex-snapshot

The Evolutionary Root of Flowering Plants

inferred← citeshttps://doi.org/10.1093/sysbio/sys078openalex-snapshot

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

inferred← citeshttps://doi.org/10.1093/sysbio/syv028openalex-snapshot

The Root of Flowering Plants and Total Evidence

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlz017openalex-snapshot

Integrating morphological and molecular taxonomy with the revised concept of Stelligeridae (Porifera: Demospongiae)

inferred← citeshttps://doi.org/10.1098/rsbl.2010.0377openalex-snapshot

Carbonaceous preservation of Cambrian hexactinellid sponge spicules

inferred← citeshttps://doi.org/10.1098/rspb.2011.1773openalex-snapshot

A molecular palaeobiological hypothesis for the origin of aplacophoran molluscs and their derivation from chiton-like ancestors

inferred← citeshttps://doi.org/10.1098/rstb.2015.0036openalex-snapshot

Early metazoan life: divergence, environment and ecology

inferred← citeshttps://doi.org/10.1101/2025.04.01.646540openalex-snapshot

Robust Phylogenetics

inferred← citeshttps://doi.org/10.1101/793372openalex-snapshot

Phylogenetic relationships of heteroscleromorph demosponges and the affinity of the genus Myceliospongia (Demospongiae incertae sedis )

inferred← citeshttps://doi.org/10.1101/sqb.2009.74.042openalex-snapshot

An Integrated View of Precambrian Eumetazoan Evolution

inferred← citeshttps://doi.org/10.1109/bibm.2011.70openalex-snapshot

A Simple and Accurate Method for Rogue Taxon Identification

inferred← citeshttps://doi.org/10.1111/1755-0998.12085openalex-snapshot

A NGS approach to the encrusting Mediterranean sponge C rella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages

inferred← citeshttps://doi.org/10.1111/brv.12909openalex-snapshot

Hydrodynamics in early animal evolution

inferred← citeshttps://doi.org/10.1111/gbi.12216openalex-snapshot

A trophic framework for animal origins

inferred← citeshttps://doi.org/10.1111/j.1365-294x.2010.04618.xopenalex-snapshot

Putting placozoans on the (phylogeographic) map

inferred← citeshttps://doi.org/10.1111/j.1472-4669.2009.00225.xopenalex-snapshot

Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200‐Myr missing Precambrian fossil record of siliceous sponge spicules

inferred← citeshttps://doi.org/10.1111/j.1472-4669.2010.00259.xopenalex-snapshot

Rangeomorphs, Thectardis (Porifera?) and dissolved organic carbon in the Ediacaran oceans

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00404.xopenalex-snapshot

A placozoan affinity for Dickinsonia and the evolution of late Proterozoic metazoan feeding modes

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00434.xopenalex-snapshot

Wnt signaling and induction in the sponge aquiferous system: evidence for an ancient origin of the organizer

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00436.xopenalex-snapshot

The genome of the sponge Amphimedon queenslandica provides new perspectives into the origin of Toll‐like and interleukin 1 receptor pathways

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00438.xopenalex-snapshot

The rise of genomics sheds light on the dawn of animals

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2010.00445.xopenalex-snapshot

Origin of animal epithelia: insights from the sponge genome

inferred← citeshttps://doi.org/10.1111/j.1525-142x.2011.00480.xopenalex-snapshot

Molecular paleobiological insights into the origin of the Brachiopoda

inferred← citeshttps://doi.org/10.1111/jpy.12131openalex-snapshot

Revisiting Ross and Sims (1971): toward a molecular phylogeny of the Biddulphiaceae and Eupodiscaceae (Bacillariophyceae)

inferred← citeshttps://doi.org/10.1111/jpy.12418openalex-snapshot

Application of multigene phylogenetics and site‐stripping to resolve intraordinal relationships in the Rhodymeniales (Rhodophyta)

inferred← citeshttps://doi.org/10.1111/jzs.12022openalex-snapshot

The number of endemic species of freshwater sponges (Malawispongiidae; Spongillina; Porifera) from Lake Kinneret is overestimated

inferred← citeshttps://doi.org/10.1111/let.12166openalex-snapshot

‘Stromatolites’ built by sponges and microbes – a new type of Phanerozoic bioconstruction

inferred← citeshttps://doi.org/10.1111/zoj.12137openalex-snapshot

Taxonomy of family Plakinidae (Porifera: Homoscleromorpha) from eastern Pacific coral reefs, through morphology andcox1andcob mtDNA data

inferred← citeshttps://doi.org/10.1111/zsc.12031openalex-snapshot

Inferring the ancestral sexuality and reproductive condition in sponges (Porifera)

inferred← citeshttps://doi.org/10.1126/science.1206375openalex-snapshot

The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals

inferred← citeshttps://doi.org/10.1130/g32413.1openalex-snapshot

The environmental affinities of marine higher taxa and possible biases in their first appearances in the fossil record

inferred← citeshttps://doi.org/10.1134/s0031030112030069openalex-snapshot

Records of a new spongelike group in the Riphean biota

inferred← citeshttps://doi.org/10.1144/m38.4openalex-snapshot

Chapter 4 Global distributional dynamics of Cambrian clades as revealed by Burgess Shale-type deposits

inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-120213-091627openalex-snapshot

Animal Phylogeny and Its Evolutionary Implications

inferred← citeshttps://doi.org/10.1146/annurev-genet-111212-133456openalex-snapshot

The Genomic and Cellular Foundations of Animal Origins

inferred← citeshttps://doi.org/10.1146/annurev.earth.031208.100209openalex-snapshot

The Multiple Origins of Complex Multicellularity

inferred← citeshttps://doi.org/10.1162/neco_a_01696openalex-snapshot

Electrical Signaling Beyond Neurons

inferred← citeshttps://doi.org/10.1186/1471-2148-10-288openalex-snapshot

Diversity of sponge mitochondrial introns revealed by cox 1sequences of Tetillidae

inferred← citeshttps://doi.org/10.1186/1471-2148-11-17openalex-snapshot

Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference

inferred← citeshttps://doi.org/10.1186/1471-2148-11-315openalex-snapshot

What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

inferred← citeshttps://doi.org/10.1186/1471-2148-14-3openalex-snapshot

Evolutionary origins of sensation in metazoans: functional evidence for a new sensory organ in sponges

inferred← citeshttps://doi.org/10.1186/1471-2148-14-44openalex-snapshot

Evolutionary relationships of the Critically Endangered frog Ericabatrachus baleensisLargen, 1991 with notes on incorporating previously unsampled taxa into large-scale phylogenetic analyses

inferred← citeshttps://doi.org/10.1186/1471-2164-12-73openalex-snapshot

Distinctive mitochondrial genome of Calanoid copepod Calanus sinicus with multiple large non-coding regions and reshuffled gene order: Useful molecular markers for phylogenetic and population studies

inferred← citeshttps://doi.org/10.1186/1472-6750-11-67openalex-snapshot

RNA interference in marine and freshwater sponges: actin knockdown in Tethya wilhelma and Ephydatia muelleriby ingested dsRNA expressing bacteria

inferred← citeshttps://doi.org/10.1186/1741-7007-12-26openalex-snapshot

Evolutionary origin of gastrulation: insights from sponge development

inferred← citeshttps://doi.org/10.1186/1741-7007-8-4openalex-snapshot

Early evolution of the LIM homeobox gene family

inferred← citeshttps://doi.org/10.1186/1741-7007-8-66openalex-snapshot

Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa

inferred← citeshttps://doi.org/10.1186/1742-9994-9-33openalex-snapshot

Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa

inferred← citeshttps://doi.org/10.1186/s12862-023-02163-5openalex-snapshot

Respiration kinetics and allometric scaling in the demosponge Halichondria panicea

inferred← citeshttps://doi.org/10.1186/s12864-015-1588-zopenalex-snapshot

Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

inferred← citeshttps://doi.org/10.1186/s12983-015-0099-8openalex-snapshot

Proposal for a revised classification of the Demospongiae (Porifera)

inferred← citeshttps://doi.org/10.1201/9781003217503-5openalex-snapshot

The Homoscleromorph Sponge, Oscarella lobularis

inferred← citeshttps://doi.org/10.1360/csb2014-59-9-796openalex-snapshot

早期海绵的四辐射对称性

inferred← citeshttps://doi.org/10.1371/journal.pbio.1000602openalex-snapshot

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

inferred← citeshttps://doi.org/10.1371/journal.pone.0014290openalex-snapshot

Molecular Phylogeny Restores the Supra-Generic Subdivision of Homoscleromorph Sponges (Porifera, Homoscleromorpha)

inferred← citeshttps://doi.org/10.1371/journal.pone.0015040openalex-snapshot

Freshwater Sponges Have Functional, Sealing Epithelia with High Transepithelial Resistance and Negative Transepithelial Potential

inferred← citeshttps://doi.org/10.1371/journal.pone.0018318openalex-snapshot

Molecular Phylogeny of the Astrophorida (Porifera, Demospongiaep) Reveals an Unexpected High Level of Spicule Homoplasy

inferred← citeshttps://doi.org/10.1371/journal.pone.0024344openalex-snapshot

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

inferred← citeshttps://doi.org/10.1371/journal.pone.0035105openalex-snapshot

Global Diversity of Sponges (Porifera)

inferred← citeshttps://doi.org/10.1371/journal.pone.0050437openalex-snapshot

Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes

inferred← citeshttps://doi.org/10.1371/journal.pone.0055505openalex-snapshot

Relationships between Host Phylogeny, Host Type and Bacterial Community Diversity in Cold-Water Coral Reef Sponges

inferred← citeshttps://doi.org/10.1371/journal.pone.0062892openalex-snapshot

The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships

inferred← citeshttps://doi.org/10.1371/journal.pone.0119248openalex-snapshot

A Higher Level Classification of All Living Organisms

inferred← citeshttps://doi.org/10.1371/journal.pone.0123331openalex-snapshot

Phylogenetic Signal Dissection Identifies the Root of Starfishes

inferred← citeshttps://doi.org/10.1371/journal.pone.0140100openalex-snapshot

The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp.

inferred← citeshttps://doi.org/10.1371/journal.pone.0287281openalex-snapshot

Phylomitogenomics bolsters the high-level classification of Demospongiae (phylum Porifera)

inferred← citeshttps://doi.org/10.1387/ijdb.113441mropenalex-snapshot

Evolutionary history of the Tricladida and the Platyhelminthes: an up-to-date phylogenetic and systematic account

inferred← citeshttps://doi.org/10.18174/540280openalex-snapshot

Dawn of a new era in sponge biotechnology

inferred← citeshttps://doi.org/10.19004/taxa.34.0_18openalex-snapshot

分類学に基づいた動物学 : 海綿動物を例に, "海綿動物門第4の綱: 同骨海綿綱"(2012年度日本動物分類学会シンポジウム)

inferred← citeshttps://doi.org/10.2216/14-002.1openalex-snapshot

Molecular phylogeny of the Cymbellales (Bacillariophyceae, Heterokontophyta) with a comparison of models for accommodating rate variation across sites

inferred← citeshttps://doi.org/10.2517/1342-8144-16.3.199openalex-snapshot

Hexactinellid Sponge Spicules in Neoproterozoic Dolostone from South China

inferred← citeshttps://doi.org/10.26879/424openalex-snapshot

Constraints on the timescale of animal evolutionary history

inferred← citeshttps://doi.org/10.3389/fcell.2022.854373openalex-snapshot

Emerging Cnidarian Models for the Study of Epithelial Polarity

inferred← citeshttps://doi.org/10.4003/006.031.0112openalex-snapshot

Recent Advances and Unanswered Questions in Deep Molluscan Phylogenetics*

inferred← citeshttps://doi.org/10.53846/goediss-6604openalex-snapshot

Insights into the Holobiont of the Early Branching Metazoan Vaceletia sp. and its Biomineralization Strategy

inferred← citeshttps://doi.org/10.70675/0dfa72d0z1817z40f6z86f9zc4e836034863openalex-snapshot

Etude de gène et voie de signalisation impliqués dans les processus morphogénétiques chez Oscarella lobularis : implications potentielles sur la compréhension de l'origine du système nerveux

inferred← citeshttps://doi.org/10.70675/29fb5e58z95e7z4353z8498zaa306e8a2449openalex-snapshot

L’origine des morphogenèses épithéliales et leurs implications concernant l’évolution précoce des métazoaires

inferred← citeshttps://doi.org/10.70675/678ad9b4z0094z499dzb772z9ec414b0d23eopenalex-snapshot

Origine et évolution des voies Wnt chez les métazoaires : étude comparée de diverses espèces d'éponges.

inferred← citeshttps://doi.org/10.70675/6797e502z87aaz4438z85eez039ab1ede89bopenalex-snapshot

Metabolisme secondaire des éponges Homoscleromorpha : diversité et fluctuation de son expression en fonction des facteurs biotiques et abiotiques

inferred← citeshttps://doi.org/10.70675/d389148dza9afz4ed0z99e9z176e9ea8b2dcopenalex-snapshot

Apport de la taxonomie intégrative à la compréhension des mécanismes à l'origine de la biodiversité des spongiaires dans les grottes sous-marines

inferred← citeshttps://doi.org/10.70675/e20e27ebza00az4c18za8bezff8cc572085eopenalex-snapshot

La reproduction chez Oscarella lobularis (Porifera - Homoscleromorpha) : gènes impliqués et effets de l'environnement

inferred← citeshttps://doi.org/10.7287/peerj.6371v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Molecular and morphological congruence of three new cryptic Neopetrosia spp. in the Caribbean (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.6371v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Molecular and morphological congruence of three new cryptic Neopetrosia spp. in the Caribbean (v0.1)"

inferred← citeshttps://doi.org/10.7717/peerj.6371openalex-snapshot

Molecular and morphological congruence of three new cryptic Neopetrosia spp. in the Caribbean

inferred← citeshttps://doi.org/10.7939/r3183485qopenalex-snapshot

Insights from Sponge Transcriptomes & Physiology about the Early Evolution of Nervous Systems

inferred← citeshttps://doi.org/10.7939/r3rx93n3mopenalex-snapshot

Sponges as sensitive animals: sensory systems and energetics of filtration in demosponges

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.