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A Transcriptomic Approach to Ribbon Worm Systematics (Nemertea): Resolving the Pilidiophora Problem

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jmor.1051870105openalex-snapshot
An ultrastructural analysis of coelomogenesis in the hoplonemertine Prosorhochmus americanus and the polychaete Magelona sp.
inferredcites →https://doi.org/10.1002/jmor.20189openalex-snapshot
Morphology of the proboscis ofHubrechtella Juliae(nemertea, pilidiophora): Implications for pilidiophoran monophyly
inferredcites →https://doi.org/10.1006/mpev.2001.0982openalex-snapshot
Phylogenetic Relationships among Higher Nemertean (Nemertea) Taxa Inferred from 18S rDNA Sequences
inferredcites →https://doi.org/10.1016/j.cub.2014.06.035openalex-snapshot
Phylogenomic Analysis of Spiders Reveals Nonmonophyly of Orb Weavers
inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot
Phylogenomics: the beginning of incongruence?
inferredcites →https://doi.org/10.1016/j.ympev.2011.09.003openalex-snapshot
Dating the arthropod tree based on large-scale transcriptome data
inferredcites →https://doi.org/10.1016/j.ympev.2013.01.010openalex-snapshot
Deep metazoan phylogeny: When different genes tell different stories
inferredcites →https://doi.org/10.1038/078171a0openalex-snapshot
A Monograph of the British Annelids
inferredcites →https://doi.org/10.1038/nature06614openalex-snapshot
Broad phylogenomic sampling improves resolution of the animal tree of life
inferredcites →https://doi.org/10.1038/nature09864openalex-snapshot
Phylogenomic analyses unravel annelid evolution
inferredcites →https://doi.org/10.1038/nature10382openalex-snapshot
Phylogenomics reveals deep molluscan relationships
inferredcites →https://doi.org/10.1038/nature10526openalex-snapshot
Resolving the evolutionary relationships of molluscs with phylogenomic tools
inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot
Inferring ancient divergences requires genes with strong phylogenetic signals
inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot
Phylogenomics and the reconstruction of the tree of life
inferredcites →https://doi.org/10.1071/is13061openalex-snapshot
New insights into the phylogeny, systematics and DNA barcoding of Nemertea
inferredcites →https://doi.org/10.1073/pnas.0607004104openalex-snapshot
High-resolution species trees without concatenation
inferredcites →https://doi.org/10.1080/00222939500770161openalex-snapshot
Nemertean genera and species of the world: an annotated checklist of original names and description citations, synonyms, current taxonomic status, habitats and recorded zoogeographic distribution
inferredcites →https://doi.org/10.1093/bib/bbn013openalex-snapshot
Recent developments in the MAFFT multiple sequence alignment program
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btr088openalex-snapshot
ProtTest 3: fast selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/bts094openalex-snapshot
Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels
inferredcites →https://doi.org/10.1093/icb/42.3.692openalex-snapshot
Progress in Nemertean Biology: Development and Phylogeny
inferredcites →https://doi.org/10.1093/icb/icq096openalex-snapshot
The Invention of the Pilidium Larva in an Otherwise Perfectly Good Spiralian Phylum Nemertea
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot
Bayesian Inference of Species Trees from Multilocus Data
inferredcites →https://doi.org/10.1093/molbev/msq089openalex-snapshot
Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
inferredcites →https://doi.org/10.1093/molbev/msq130openalex-snapshot
A Phylogenomic Approach to Resolve the Arthropod Tree of Life
inferredcites →https://doi.org/10.1093/molbev/msr110openalex-snapshot
Let Them Fall Where They May: Congruence Analysis in Massive Phylogenetically Messy Data Sets
inferredcites →https://doi.org/10.1093/molbev/msr270openalex-snapshot
Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda
inferredcites →https://doi.org/10.1093/molbev/mss112openalex-snapshot
Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
inferredcites →https://doi.org/10.1093/molbev/mss208openalex-snapshot
Impact of Missing Data on Phylogenies Inferred from Empirical Phylogenomic Data Sets
inferredcites →https://doi.org/10.1093/molbev/msu061openalex-snapshot
Novel Information Theory-Based Measures for Quantifying Incongruence among Phylogenetic Trees
inferredcites →https://doi.org/10.1093/molbev/msu108openalex-snapshot
Evaluating Topological Conflict in Centipede Phylogeny Using Transcriptomic Data Sets
inferredcites →https://doi.org/10.1093/molbev/msu143openalex-snapshot
Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia
inferredcites →https://doi.org/10.1093/molbev/msu235openalex-snapshot
Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal
inferredcites →https://doi.org/10.1093/nar/gki198openalex-snapshot
MAFFT version 5: improvement in accuracy of multiple sequence alignment
inferredcites →https://doi.org/10.1093/sysbio/syp031openalex-snapshot
Estimating Species Phylogenies Using Coalescence Times among Sequences
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syt073openalex-snapshot
Conserved Genes, Sampling Error, and Phylogenomic Inference
inferredcites →https://doi.org/10.1098/rsbl.2007.0306openalex-snapshot
Annulonemertes (phylum Nemertea): when segments do not count
inferredcites →https://doi.org/10.1098/rspb.2002.2254openalex-snapshot
Ribbon worm relationships: a phylogeny of the phylum Nemertea
inferredcites →https://doi.org/10.1098/rspb.2009.0896openalex-snapshot
Assessing the root of bilaterian animals with scalable phylogenomic methods
inferredcites →https://doi.org/10.1098/rspb.2014.1739openalex-snapshot
Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda
inferredcites →https://doi.org/10.1098/rstb.2007.2236openalex-snapshot
Improvement of molecular phylogenetic inference and the phylogeny of Bilateria
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1109/tcbb.2013.8openalex-snapshot
SuperQ: Computing Supernetworks from Quartets
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00394.xopenalex-snapshot
Noise
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00376.xopenalex-snapshot
Disentangling ribbon worm relationships: multi‐locus analysis supports traditional classification of the phylum Nemertea
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00414.xopenalex-snapshot
ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01097.xopenalex-snapshot
CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS
inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03097.xopenalex-snapshot
Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next‐generation sequencing
inferredcites →https://doi.org/10.1186/1471-2105-5-187openalex-snapshot
prot4EST: Translating Expressed Sequence Tags from neglected genomes
inferredcites →https://doi.org/10.1186/1471-2148-9-150openalex-snapshot
On the phylogenetic position of Myzostomida: Can 77 genes get it wrong?
inferredcites →https://doi.org/10.1186/1471-2164-13-139openalex-snapshot
A comparative study of nemertean complete mitochondrial genomes, including two new ones for Nectonemertes cf. mirabilis and Zygeupolia rubens, may elucidate the fundamental pattern for the phylum Nemertea
inferredcites →https://doi.org/10.1186/1742-9994-7-30openalex-snapshot
Development to metamorphosis of the nemertean pilidium larva
inferredcites →https://doi.org/10.1186/1742-9994-9-33openalex-snapshot
Comparative description of ten transcriptomes of newly sequenced invertebrates and efficiency estimation of genomic sampling in non-model taxa
inferredcites →https://doi.org/10.12782/specdiv.13.245openalex-snapshot
Checklist of Nemertean Genera and Species Published between 1995 and 2007
inferredcites →https://doi.org/10.1371/journal.pbio.1000602openalex-snapshot
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pone.0018755openalex-snapshot
Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade
inferredcites →https://doi.org/10.1371/journal.pone.0025355openalex-snapshot
Inferring Species Trees from Gene Trees in a Radiation of California Trapdoor Spiders (Araneae, Antrodiaetidae, Aliatypus)
inferredcites →https://doi.org/10.1371/journal.pone.0029843openalex-snapshot
Exploiting Gene Families for Phylogenomic Analysis of Myzostomid Transcriptome Data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.4061.2.4zenodo-depositor-declared
New records of ribbon worms (Nemertea) from Ceará, Northeast Brazil
inferred← citeshttps://doi.org/10.1007/978-1-4939-3774-5_4openalex-snapshot
Phylogenomics Using Transcriptome Data
inferred← citeshttps://doi.org/10.1007/978-3-7091-1871-9_8openalex-snapshot
Nemertea
inferred← citeshttps://doi.org/10.1007/978-4-431-56432-4_16openalex-snapshot
Species Diversity of Japanese Ribbon Worms (Nemertea)
inferred← citeshttps://doi.org/10.1007/s00227-023-04287-0openalex-snapshot
Raising predatory babies: development from fertilization to sexual maturity of the hoplonemertean Emplectonema viride (Nemertea)
inferred← citeshttps://doi.org/10.1007/s00435-014-0246-3openalex-snapshot
The nervous systems of Pilidiophora (Nemertea)
inferred← citeshttps://doi.org/10.1007/s00435-017-0394-3openalex-snapshot
Unexpected ultrastructure of an eye in Spiralia: the larval ocelli of Procephalothrix oestrymnicus (Nemertea)
inferred← citeshttps://doi.org/10.1007/s00435-018-0414-yopenalex-snapshot
The nervous systems of Hoplonemertea (Nemertea)
inferred← citeshttps://doi.org/10.1007/s00435-019-00440-wopenalex-snapshot
Comparative muscular morphology in Archinemertea (Nemertea: Palaeonemertea)
inferred← citeshttps://doi.org/10.1007/s00435-024-00659-2openalex-snapshot
Ultrastructure and phylogenetic significance of spermatozoa in Nemertea
inferred← citeshttps://doi.org/10.1007/s10750-015-2310-5openalex-snapshot
Phylogeny of Nemertea with special interest in the placement of diversity from Far East Russia and northeast Asia
inferred← citeshttps://doi.org/10.1007/s13127-015-0236-4openalex-snapshot
New animal phylogeny: future challenges for animal phylogeny in the age of phylogenomics
inferred← citeshttps://doi.org/10.1007/s13127-015-0261-3openalex-snapshot
On 20 years of Lophotrochozoa
inferred← citeshttps://doi.org/10.1016/b978-0-08-102871-1.00019-1openalex-snapshot
Phylum Nemertea
inferred← citeshttps://doi.org/10.1016/j.jcz.2015.01.003openalex-snapshot
Morphology should not be forgotten in the era of genomics–a phylogenetic perspective
inferred← citeshttps://doi.org/10.1016/j.jcz.2021.08.005openalex-snapshot
A comparative morphological study of the testes, spermatogenesis, and spermatozoa in two nemertean species, Callinera sp. and Parahubrechtia sp. (Palaeonemertea, Tubulanidae)
inferred← citeshttps://doi.org/10.1016/j.jembe.2017.05.007openalex-snapshot
Addressing biodiversity shortfalls in meiofauna
inferred← citeshttps://doi.org/10.1016/j.margen.2015.01.003openalex-snapshot
The complete mitochondrial genome of Micrura ignea Schwartz & Norenburg 2005 (Nemertea: Heteronemertea) and comparative analysis with other nemertean mitogenomes
inferred← citeshttps://doi.org/10.1016/j.micron.2020.102853openalex-snapshot
Spermatozoa ultrastructure of two basal pilidiophoran nemerteans, Hubrechtella juliae and Sonnenemertes cantelli (Nemertea, Pilidiophora)
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.10.019openalex-snapshot
Re-evaluating the phylogeny of Sipuncula through transcriptomics
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.02.013openalex-snapshot
Elucidating the phylogenetic position of Gnathostomulida and first mitochondrial genomes of Gnathostomulida, Gastrotricha and Polycladida (Platyhelminthes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.01.009openalex-snapshot
The phylogenetic position of eriophyoid mites (superfamily Eriophyoidea) in Acariformes inferred from the sequences of mitochondrial genomes and nuclear small subunit (18S) rRNA gene
inferred← citeshttps://doi.org/10.1017/cbo9781316338797.015openalex-snapshot
Molecular data in systematics: a promise fulfilled, a future beckoning
inferred← citeshttps://doi.org/10.1017/s0025315415000090openalex-snapshot
Redescription of Micrura dellechiajei (Hubrecht, 1879) (Nemertea, Pilidiophora, Lineidae), a rare Mediterranean species
inferred← citeshttps://doi.org/10.1038/s41467-026-75551-2openalex-snapshot
Convergent genomic trajectories shape adaptation to life on land across animal lineages
inferred← citeshttps://doi.org/10.1038/s41559-018-0641-0openalex-snapshot
Evolution of the bilaterian mouth and anus
inferred← citeshttps://doi.org/10.1080/14772000.2017.1317672openalex-snapshot
Taxonomy and phylogeny ofLineus torquatusand allies (Nemertea, Lineidae) with descriptions of a new genus and a new cryptic species
inferred← citeshttps://doi.org/10.1080/23802359.2020.1756967openalex-snapshot
Characterization and phylogenetic analysis of the complete mitochondrial genome of the marine ribbon worm Cephalothrix species (nemertea: Palaeonemertea)
inferred← citeshttps://doi.org/10.1086/bblv229n3p265openalex-snapshot
Larval Development of Two N. E. Pacific Pilidiophoran Nemerteans (Heteronemertea; Lineidae)
inferred← citeshttps://doi.org/10.1093/gbe/evae127openalex-snapshot
First Chromosome-Level Genome Assembly of a Ribbon Worm from the Hoplonemertea Clade, Emplectonema gracile , and Its Structural Annotation
inferred← citeshttps://doi.org/10.1093/molbev/msab211openalex-snapshot
Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems
inferred← citeshttps://doi.org/10.1093/molbev/msac096openalex-snapshot
Evolution, Expression Patterns, and Distribution of Novel Ribbon Worm Predatory and Defensive Toxins
inferred← citeshttps://doi.org/10.1093/molbev/msv157openalex-snapshot
Articulating “Archiannelids”: Phylogenomics and Annelid Relationships, with Emphasis on Meiofaunal Taxa
inferred← citeshttps://doi.org/10.1093/molbev/msw069openalex-snapshot
A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology
inferred← citeshttps://doi.org/10.1093/molbev/msx268openalex-snapshot
Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta)
inferred← citeshttps://doi.org/10.1093/sysbio/syv059openalex-snapshot
Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlab106openalex-snapshot
Proboscis sensory cells in Nemertea: comparative morphology and phylogenetic implications
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlac015openalex-snapshot
Exploring the basal topology of the heteronemertean tree of life: establishment of a new family, along with turbotaxonomy of Valenciniidae (Nemertea: Pilidiophora: Heteronemertea)
inferred← citeshttps://doi.org/10.1098/rsos.220939openalex-snapshot
A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution
inferred← citeshttps://doi.org/10.1098/rspb.2018.2524openalex-snapshot
A phylum-wide survey reveals multiple independent gains of head regeneration in Nemertea
inferred← citeshttps://doi.org/10.1098/rstb.2015.0045openalex-snapshot
Embracing the comparative approach: how robust phylogenies and broader developmental sampling impacts the understanding of nervous system evolution
inferred← citeshttps://doi.org/10.1101/2022.07.14.500079openalex-snapshot
A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life history evolution
inferred← citeshttps://doi.org/10.1111/ivb.12363openalex-snapshot
Hoplonemertean larvae are planktonic predators that capture and devour active animal prey
inferred← citeshttps://doi.org/10.1111/mec.13717openalex-snapshot
Population genomics of sexual and asexual lineages in fissiparous ribbon worms (Lineus, Nemertea): hybridization, polyploidy and the Meselson effect
inferred← citeshttps://doi.org/10.1111/zsc.12317openalex-snapshot
Nemertean taxonomy—Implementing changes in the higher ranks, dismissing Anopla and Enopla
inferred← citeshttps://doi.org/10.1186/s10152-016-0466-7openalex-snapshot
First record on the development of the larva of the basally branching nemertean species Carinina ochracea (Palaeonemertea)
inferred← citeshttps://doi.org/10.1186/s12915-015-0133-5openalex-snapshot
Hox genes pattern the anterior-posterior axis of the juvenile but not the larva in a maximally indirect developing invertebrate, Micrura alaskensis (Nemertea)
inferred← citeshttps://doi.org/10.1186/s12983-017-0189-xopenalex-snapshot
Development of a lecithotrophic pilidium larva illustrates convergent evolution of trochophore-like morphology
inferred← citeshttps://doi.org/10.1186/s12983-019-0326-9openalex-snapshot
A nemertean excitatory peptide/CCHamide regulates ciliary swimming in the larvae of Lineus longissimus
inferred← citeshttps://doi.org/10.1186/s13227-015-0021-7openalex-snapshot
Expression of Hox, Cdx, and Six3/6 genes in the hoplonemertean Pantinonemertes californiensis offers insight into the evolution of maximally indirect development in the phylum Nemertea
inferred← citeshttps://doi.org/10.1186/s13227-015-0023-5openalex-snapshot
Evolution and development of the adelphophagic, intracapsular Schmidt’s larva of the nemertean Lineus ruber
inferred← citeshttps://doi.org/10.1186/s13227-017-0079-5openalex-snapshot
The trochoblasts in the pilidium larva break an ancient spiralian constraint to enable continuous larval growth and maximally indirect development
inferred← citeshttps://doi.org/10.1371/journal.pone.0165649openalex-snapshot
Development of the Nervous System of Carinina ochracea (Palaeonemer-tea, Nemertea)
inferred← citeshttps://doi.org/10.2108/zs140254openalex-snapshot
Thirty-Five Years of Nemertean (Nemertea) Research—Past, Present, and Future
inferred← citeshttps://doi.org/10.2108/zs140267openalex-snapshot
CLSM Analysis of the Phalloidin-Stained Muscle System of the Nemertean Proboscis and Rhynchocoel
inferred← citeshttps://doi.org/10.3389/fevo.2021.654846openalex-snapshot
Diversity in the Development of the Neuromuscular System of Nemertean Larvae (Nemertea, Spiralia)
inferred← citeshttps://doi.org/10.3389/fnins.2024.1375208openalex-snapshot
Comparative development of the serotonin- and FMRFamide-immunoreactive components of the nervous system in two distantly related ribbon worm species (Nemertea, Spiralia)
inferred← citeshttps://doi.org/10.3390/genes12091347openalex-snapshot
Genome Size Dynamics in Marine Ribbon Worms (Nemertea, Spiralia)
inferred← citeshttps://doi.org/10.3390/toxins11020120openalex-snapshot
The Toxins of Nemertean Worms
inferred← citeshttps://doi.org/10.3390/toxins14080542openalex-snapshot
Investigation of Peptide Toxin Diversity in Ribbon Worms (Nemertea) Using a Transcriptomic Approach
inferred← citeshttps://doi.org/10.3390/toxins15110650openalex-snapshot
Venomous Noodles: The Evolution of Toxins in Nemertea through Positive Selection and Gene Duplication
inferred← citeshttps://doi.org/10.3390/toxins6123488openalex-snapshot
Quo Vadis Venomics? A Roadmap to Neglected Venomous Invertebrates
inferred← citeshttps://doi.org/10.7287/peerj.10912v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Pseudocnidae of ribbon worms (Nemertea): ultrastructure, maturation, and functional morphology (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.10912v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Pseudocnidae of ribbon worms (Nemertea): ultrastructure, maturation, and functional morphology (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.10912openalex-snapshot
Pseudocnidae of ribbon worms (Nemertea): ultrastructure, maturation, and functional morphology
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.