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A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution

https://doi.org/10.1098/rsos.220939

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Trochophora larvae: cell-lineages, ciliary bands and body regions. 2. Other groups and general discussion

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The importance of the fixation of colour, pattern and form in tropical Pseudocerotidae (Platyhelminthes, Polycladida)

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Phylogenetic Relationships of Annelids, Molluscs, and Arthropods Evidenced from Molecules and Morphology

inferredcites →https://doi.org/10.1007/s00338-011-0745-3openalex-snapshot

Taxonomy and life history of the Acropora-eating flatworm Amakusaplana acroporae nov. sp. (Polycladida: Prosthiostomidae)

inferredcites →https://doi.org/10.1007/s00441-019-03094-8openalex-snapshot

No head regeneration here: regeneration capacity and stem cell dynamics of Theama mediterranea (Polycladida, Platyhelminthes)

inferredcites →https://doi.org/10.1007/s10126-020-09968-1openalex-snapshot

Taxonomic Distribution of Tetrodotoxin in Acotylean Flatworms (Polycladida: Platyhelminthes)

inferredcites →https://doi.org/10.1007/s13127-017-0327-5openalex-snapshot

Polycladida phylogeny and evolution: integrating evidence from 28S rDNA and morphology

inferredcites →https://doi.org/10.1007/s13127-017-0344-4openalex-snapshot

Phylogeny of Polycladida (Platyhelminthes) based on mtDNA data

inferredcites →https://doi.org/10.1016/0022-2011(80)90040-3openalex-snapshot

The fine structure of the miracidium of Schistosoma mansoni

inferredcites →https://doi.org/10.1016/j.cub.2015.03.034openalex-snapshot

A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms

inferredcites →https://doi.org/10.1016/j.cub.2018.11.042openalex-snapshot

A New Spiralian Phylogeny Places the Enigmatic Arrow Worms among Gnathiferans

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1038/44766openalex-snapshot

Inferring the historical patterns of biological evolution

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/s41467-020-17780-7openalex-snapshot

Genes with spiralian-specific protein motifs are expressed in spiralian ciliary bands

inferredcites →https://doi.org/10.1046/j.1469-7580.2003.00239.xopenalex-snapshot

Seasonal changes in the lower jaw skeleton in male Atlantic salmon (Salmo salar L.): remodelling and regression of the kype after spawning

inferredcites →https://doi.org/10.1073/pnas.0901808106openalex-snapshot

The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

inferredcites →https://doi.org/10.1073/pnas.85.8.2444openalex-snapshot

Improved tools for biological sequence comparison.

inferredcites →https://doi.org/10.1080/00222935008654041openalex-snapshot

II.—On some Polyclad Turbellarians from Burma

inferredcites →https://doi.org/10.1080/07924259.2017.1287781openalex-snapshot

Obligate planktotrophy in the Götte’s larva ofStylochus ellipticus(Platyhelminthes)

inferredcites →https://doi.org/10.1080/11250000701690525openalex-snapshot

Theama mediterranea sp. nov. (Platyhelminthes, Polycladida), the first interstitial polyclad from the Mediterranean

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

inferredcites →https://doi.org/10.1093/molbev/msab199openalex-snapshot

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msu080openalex-snapshot

Illuminating the Base of the Annelid Tree Using Transcriptomics

inferredcites →https://doi.org/10.1093/molbev/msu253openalex-snapshot

A Transcriptomic Approach to Ribbon Worm Systematics (Nemertea): Resolving the Pilidiophora Problem

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/nar/gki070openalex-snapshot

The Universal Protein Resource (UniProt)

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040082openalex-snapshot

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot

Relationships between gene trees and species trees.

inferredcites →https://doi.org/10.1093/sysbio/syt034openalex-snapshot

Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms

inferredcites →https://doi.org/10.1093/sysbio/syz051openalex-snapshot

GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

inferredcites →https://doi.org/10.1093/zoolinnean/zlz007openalex-snapshot

Systematic congruence in Polycladida (Platyhelminthes, Rhabditophora): are DNA and morphology telling the same story?

inferredcites →https://doi.org/10.1098/rsos.150196openalex-snapshot

Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation

inferredcites →https://doi.org/10.1098/rsos.220939openalex-snapshot

A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution

inferredcites →https://doi.org/10.1098/rspb.1982.0093openalex-snapshot

The nervous system and ciliary band of Müller’s larva

inferredcites →https://doi.org/10.1101/2022.07.14.500079openalex-snapshot

A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life history evolution

inferredcites →https://doi.org/10.1101/gr.1865504openalex-snapshot

GeneWise and Genomewise

inferredcites →https://doi.org/10.1111/j.1525-142x.2004.04027.xopenalex-snapshot

Vestigial prototroch in a basal nemertean,Carinoma tremaphoros(Nemertea; Palaeonemertea)

inferredcites →https://doi.org/10.1111/j.1744-7410.2007.00119.xopenalex-snapshot

Cotylea (Polycladida): a cladistic analysis of morphology

inferredcites →https://doi.org/10.1111/syen.12217openalex-snapshot

Phylotranscriptomics resolves ancient divergences in the Lepidoptera

inferredcites →https://doi.org/10.1139/z83-004openalex-snapshot

The brain and central nervous system of Müller's larva

inferredcites →https://doi.org/10.11646/zootaxa.1317.1.1openalex-snapshot

First description of deep-sea polyclad flatworms from the North Pacific: Anocellidus n. gen. profundus n. sp. (Anocellidae, n. fam.) and Oligocladus voightae n. sp. (Euryleptidae)

inferredcites →https://doi.org/10.11646/zootaxa.4565.3.5openalex-snapshot

Description of the snail-eating flatworm in marine aquaria, Pericelis tectivorum sp. nov. (Polycladida, Platyhelminthes)

inferredcites →https://doi.org/10.11646/zootaxa.5024.1.1openalex-snapshot

Biodiversity of intertidal marine flatworms (Polycladida, Platyhelminthes) in southeastern Australia

inferredcites →https://doi.org/10.1186/1471-2105-12-457openalex-snapshot

A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships

inferredcites →https://doi.org/10.1186/1471-2148-7-11openalex-snapshot

A common origin of complex life cycles in parasitic flatworms: evidence from the complete mitochondrial genome of Microcotyle sebastis (Monogenea: Platyhelminthes).

inferredcites →https://doi.org/10.1186/1471-2148-9-157openalex-snapshot

HaMStR: Profile hidden markov model based search for orthologs in ESTs

inferredcites →https://doi.org/10.1186/2041-9139-3-7openalex-snapshot

Developmental diversity in free-living flatworms

inferredcites →https://doi.org/10.1186/2041-9139-4-29openalex-snapshot

Put a tiger in your tank: the polyclad flatworm Maritigrella crozieri as a proposed model for evo-devo

inferredcites →https://doi.org/10.1186/2041-9139-5-9openalex-snapshot

The diversity, development and evolution of polyclad flatworm larvae

inferredcites →https://doi.org/10.1186/s12862-017-1066-0openalex-snapshot

Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)

inferredcites →https://doi.org/10.12782/specdiv.25.189openalex-snapshot

A New Species of Zygantroides (Platyhelminthes: Polycladida) from Amakusa, Japan

inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot

Accelerated Profile HMM Searches

inferredcites →https://doi.org/10.2108/zs190136openalex-snapshot

Molecular Phylogenetic Analysis of Acotylea (Platyhelminthes: Polycladida)

inferredcites →https://doi.org/10.2307/2407296openalex-snapshot

Evolution of the Metazoan Life Cycle. A Comprehensive Theory.

inferredcites →https://doi.org/10.2988/0006-324x-134.1.306openalex-snapshot

Description of a new species of Alloioplana (Polycladida: Stylochoplanidae) with an inference on its phylogenetic position in Leptoplanoidea

inferredcites →https://doi.org/10.3354/ab00682openalex-snapshot

A molecular framework for the taxonomy and systematics of Japanese marine turbellarian flatworms (Platyhelminthes, Polycladida)

inferredcites →https://doi.org/10.3897/zookeys.918.47061openalex-snapshot

A giant new species of Enchiridium (Polycladida, Prosthiostomidae) from southwestern Japan

inferredcites →https://doi.org/10.4137/ebo.s12813openalex-snapshot

PhyloTreePruner: A Phylogenetic Tree-Based Approach for selection of Orthologous sequences for phylogenomics

inferredcites →https://doi.org/10.5852/ejt.2021.736.1249openalex-snapshot

Polycladida (Platyhelminthes, Rhabditophora) from Cape Verde and related regions of Macaronesia

inferredcites →https://doi.org/10.5962/bhl.title.10545openalex-snapshot

Die polycladen (seeplanarien) des golfes von Neapel und der angrenzenden meeres-abschnitte

inferredcites →https://doi.org/10.7554/elife.05503openalex-snapshot

Nuclear genomic signals of the ‘microturbellarian’ roots of platyhelminth evolutionary innovation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/zse.100.119945zenodo-depositor-declared

Base-substitution rates of nuclear and mitochondrial genes for polyclad flatworms

inferred← citeshttps://doi.org/10.1002/cbin.12139openalex-snapshot

The ultrastructure of the apical organ of Curini‐Galletti's larva, a new polyclad larval type

inferred← citeshttps://doi.org/10.1002/cbin.70034openalex-snapshot

The Ultrastructure of the Apical Organ of the Goette's Larvae of the Polyclad Flatworm Stylochus pilidium Indicates Homology Between Polyclad Larvae

inferred← citeshttps://doi.org/10.1007/s10530-026-03948-7openalex-snapshot

First record of the invasive flatworm Postenterogonia orbicularis (Schmarda, 1859) in the Mediterranean Sea with an update of the European distribution

inferred← citeshttps://doi.org/10.1007/s13127-026-00699-0openalex-snapshot

A deep-time perspective on Polycladida (Platyhelminthes) through integrated phylogenetic and molecular clock analyses

inferred← citeshttps://doi.org/10.1098/rsbl.2024.0721openalex-snapshot

Phylogenetic history of the acquisition of molluscan hosts in acotylean flatworms

inferred← citeshttps://doi.org/10.1111/azo.70019openalex-snapshot

The Embryonic Development of the Cotylean Polyclad Phrikoceros jannetae

inferred← citeshttps://doi.org/10.1111/jse.13195openalex-snapshot

A public collection of phylogenetics experiences in audio and video form

inferred← citeshttps://doi.org/10.1590/s1984-4689.v41.e24002openalex-snapshot

Fossil constraints on the origin and evolution of Platyhelminthes are surprisingly concordant with modern molecular phylogenies

inferred← citeshttps://doi.org/10.3390/d18090566openalex-snapshot

Decoding the Evolutionary Transitions and Distribution of Basal and Keystone Lineages of Polycladida (Rhabditophora)

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