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Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
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Robust inference of positive selection from recombining coding sequences
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Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm
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Evolutionary Fingerprinting of Genes
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Purifying Selection Can Obscure the Ancient Age of Viral Lineages
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FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection
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RELAX: Detecting Relaxed Selection in a Phylogenetic Framework
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Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
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Gene-Wide Identification of Episodic Selection
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Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida
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Positive Selection Pressure Introduces Secondary Mutations at Gag Cleavage Sites in Human Immunodeficiency Virus Type 1 Harboring Major Protease Resistance Mutations
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Detecting Individual Sites Subject to Episodic Diversifying Selection
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inferred← citeshttps://doi.org/10.1016/b978-0-12-814515-9.00056-4openalex-snapshot
Computational Analysis of Recombination in Viral Nucleotide Sequences
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00144-5openalex-snapshot
Evolution of Protein Families
inferred← citeshttps://doi.org/10.1016/b978-0-323-99886-4.00014-4openalex-snapshot
Phylogenomics and evolution of measles virus
inferred← citeshttps://doi.org/10.1016/b978-0-443-28818-0.00023-9openalex-snapshot
Microbial Sequence Typing Strategies for Genetic and Genomic Data
inferred← citeshttps://doi.org/10.1016/j.aaf.2026.01.005openalex-snapshot
Genome-wide identification and stress-responsive expression analysis of matrix metalloproteinases in large yellow croaker (Larimichthys crocea)
inferred← citeshttps://doi.org/10.1016/j.actatropica.2022.106674openalex-snapshot
An extensive analysis of Codon usage pattern, Evolutionary rate, and Phylogeographic reconstruction in Foot and mouth disease (FMD) serotypes (A, Asia 1, and O) of six major climatic zones of India: A comparative study
inferred← citeshttps://doi.org/10.1016/j.actatropica.2023.107111openalex-snapshot
Evaluating the genetic diversity of the Plasmodium vivax siap2 locus: A promising candidate for an effective malaria vaccine?
inferred← citeshttps://doi.org/10.1016/j.actatropica.2024.107231openalex-snapshot
Exploring the genetic diversity pattern of PvEBP/DBP2: A promising candidate for an effective Plasmodium vivax vaccine
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.739709openalex-snapshot
Piscine orthoreovirus 3a detected from farmed coho salmon with jaundice syndrome displays positive selection and polymorphisms in S1 and M2 viral segment
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.744053openalex-snapshot
Complex recombination events underlie the formation and population dominance of the viral hemorrhagic septicemia virus sub-genotype IVa
inferred← citeshttps://doi.org/10.1016/j.avrs.2025.100279openalex-snapshot
Patterns of genetic diversity in five species of Passeriformes co-distributed in an environmental gradient
inferred← citeshttps://doi.org/10.1016/j.bbadis.2022.166514openalex-snapshot
Decoding molecular factors shaping human angiotensin converting enzyme 2 receptor usage by spike glycoprotein in lineage B beta-coronaviruses
inferred← citeshttps://doi.org/10.1016/j.biochi.2022.02.004openalex-snapshot
Structural and evolutionary analysis unveil functional adaptations in the promiscuous behavior of serum albumins
inferred← citeshttps://doi.org/10.1016/j.cbd.2022.101055openalex-snapshot
Structural evolution of an amphibian-specific globin: A computational evolutionary biochemistry approach
inferred← citeshttps://doi.org/10.1016/j.cell.2022.06.042openalex-snapshot
The evolution and diversification of oakleaf butterflies
inferred← citeshttps://doi.org/10.1016/j.chom.2021.07.001openalex-snapshot
Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome
inferred← citeshttps://doi.org/10.1016/j.chom.2024.12.016openalex-snapshot
Decoding the blueprint of receptor binding by filoviruses through large-scale binding assays and machine learning
inferred← citeshttps://doi.org/10.1016/j.cimid.2023.102079openalex-snapshot
Evolution, genetic recombination, and phylogeography of goose parvovirus
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2021.107594openalex-snapshot
Polymorphic landscape of SARS-CoV-2 genomes isolated from Indian population in 2020 demonstrates rapid evolution in ORF3a, ORF8, nucleocapsid phosphoprotein and spike glycoprotein
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2022.107637openalex-snapshot
Natural selection shaped the evolution of amino acid usage in mammalian toll like receptor genes
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100432openalex-snapshot
Evolution of tandem repeats in putative circumsporozoite protein to enhance its function: A recent and exclusive event in Plasmodium vivax in India
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.02.009openalex-snapshot
The evolution of metabolism: How to test evolutionary hypotheses at the genomic level
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.07.022openalex-snapshot
Evolutionary analysis of ZAP and its cofactors identifies intrinsically disordered regions as central elements in host-pathogen interactions
inferred← citeshttps://doi.org/10.1016/j.cub.2026.05.021openalex-snapshot
Genomic and physiological changes in a sexually selected and frugivorous bird radiation
inferred← citeshttps://doi.org/10.1016/j.dci.2020.103958openalex-snapshot
The evolutionary analysis of complement component C5 and the gene co–expression network and putative interaction between C5a and C5a anaphylatoxin receptor (C5AR/CD88) in human and two Cyprinid fish
inferred← citeshttps://doi.org/10.1016/j.dci.2022.104398openalex-snapshot
Novel insights on aquatic mammal MHC evolution: Evidence from manatee DQB diversity
inferred← citeshttps://doi.org/10.1016/j.dci.2023.104704openalex-snapshot
Divergent evolution drives high diversity of toll-like receptors (TLRs) in passerine birds: Buntings and finches
inferred← citeshttps://doi.org/10.1016/j.dci.2023.105079openalex-snapshot
Recent selection created distinctive variability patterns on MHC class II loci in three dolphin species from the Mediterranean Sea
inferred← citeshttps://doi.org/10.1016/j.dci.2025.105375openalex-snapshot
Molecular characterization, expression, evolutionary analysis and molecular docking of the Janus activated kinase family members of largemouth bass (Micropterus salmoides)
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2026.117559openalex-snapshot
Selective pressure-driven identification of conserved regions for Oropouche virus molecular detection
inferred← citeshttps://doi.org/10.1016/j.dnarep.2025.103900openalex-snapshot
CPD photolyase evolution supports amphibian UV-sensitivity hypothesis
inferred← citeshttps://doi.org/10.1016/j.fsi.2020.09.030openalex-snapshot
Fish complement C4 gene evolution and gene/protein regulatory network analyses and simulated stereo conformation of C4–MASP–2 protein complex
inferred← citeshttps://doi.org/10.1016/j.fsi.2021.05.015openalex-snapshot
The evolutionary puzzle solution for the origins of the partial loss of the Cτ2 exon in notothenioid fishes
inferred← citeshttps://doi.org/10.1016/j.fsi.2022.09.051openalex-snapshot
Identification and functional analysis of dual-specificity phosphatases (DUSP) genes in Japanese flounder (Paralichthys olivaceus) against temperature and Edwardsiella tarda stress
inferred← citeshttps://doi.org/10.1016/j.fsi.2023.108878openalex-snapshot
Identification of the matrix metalloproteinase (MMP) gene family in Japanese flounder (Paralichthys olivaceus): Involved in immune response regulation to temperature stress and Edwardsiella tarda infection
inferred← citeshttps://doi.org/10.1016/j.fsi.2023.108963openalex-snapshot
Comprehensive transcripts analysis based on single-molecule real-time sequencing and Illumina sequencing provides insights into the mining of Toll-like receptor family in Schizothorax lissolabiatus
inferred← citeshttps://doi.org/10.1016/j.fsi.2024.109903openalex-snapshot
Unravelling stress granules in the deep cold: Characterisation of TIA-1 gene sequence in Antarctic fish species
inferred← citeshttps://doi.org/10.1016/j.fsi.2024.109984openalex-snapshot
Characterization, expressional and evolutionary analysis of five fish-specific CCRs (CCR4La, CCR4Lc, CCR12a1, CCR12a2, and CCR12b) in largemouth bass (Micropterus salmoides)
inferred← citeshttps://doi.org/10.1016/j.gene.2018.10.028openalex-snapshot
Recombination and purifying and balancing selection determine the evolution of major antigenic protein 1 (map 1) family genes in Ehrlichia ruminantium
inferred← citeshttps://doi.org/10.1016/j.gene.2019.144296openalex-snapshot
Variation in the rates of evolution of the insulin and glucagon hormone and receptor genes in rodents
inferred← citeshttps://doi.org/10.1016/j.gene.2021.145468openalex-snapshot
Genome-wide identification and characterization of olfactory receptor genes in common carp (Cyprinus carpio)
inferred← citeshttps://doi.org/10.1016/j.gene.2023.147685openalex-snapshot
Complex origin, evolution, and diversification of non-canonically organized OVATE-OFP and OVATE-Like OFP gene pair across Embryophyta
inferred← citeshttps://doi.org/10.1016/j.gene.2023.148098openalex-snapshot
Complete mitogenome of Lepidopygopsis typus, an evolutionarily-distinct, endangered cyprinid fish from the Western Ghats Biodiversity Hotspot: Phylogenetic relationships and implications for conservation
inferred← citeshttps://doi.org/10.1016/j.gene.2024.148373openalex-snapshot
Polymorphism in the leucine-rich repeats of TLR7 in different breeds of chicken and in silico analysis of its effect on TLR7 structure and function
inferred← citeshttps://doi.org/10.1016/j.gene.2025.149894openalex-snapshot
Genetic diversity, natural selection, and immunological features of the Plasmodium vivax CyRPA protein: Implications for vaccine development
inferred← citeshttps://doi.org/10.1016/j.hal.2024.102655openalex-snapshot
First report of PST-producing Microseira wollei from China reveals its novel toxin profile
inferred← citeshttps://doi.org/10.1016/j.heliyon.2020.e05001openalex-snapshot
Selective pressure on SARS-CoV-2 protein coding genes and glycosylation site prediction
inferred← citeshttps://doi.org/10.1016/j.heliyon.2020.e05679openalex-snapshot
Longitudinal characterization of HIV-1 pol-gene in treatment-naïve men-who-have-sex-with-men from acute to chronic infection stages
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e14624openalex-snapshot
Genome-wide characterization and expression analysis of the MLO gene family sheds light on powdery mildew resistance in Lagenaria siceraria
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2020.06.025openalex-snapshot
The first mitochondrial genomes of endosymbiotic rhabdocoels illustrate evolutionary relaxation of atp8 and genome plasticity in flatworms
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.123374openalex-snapshot
Barbel regeneration and function divergence in red-tail catfish (Hemibagrus wyckioides) based on the chromosome-level genomes and comparative transcriptomes
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2026.152413openalex-snapshot
Small peptide from extracellular leucine-rich repeat domain protein 2 modulates cadmium tolerance through regulating photosynthesis and lignin content in rice
inferred← citeshttps://doi.org/10.1016/j.ijid.2025.107864openalex-snapshot
Molecular analysis of influenza A(H3N2) in a remote tropical island during 2014-2019 to identify the frequency of introduction and local circulation
inferred← citeshttps://doi.org/10.1016/j.ijid.2026.108957openalex-snapshot
From emergence to resurgence: evolutionary dynamics of chikungunya virus in Bangladesh, 2008-2025
inferred← citeshttps://doi.org/10.1016/j.ijmm.2026.151700openalex-snapshot
Sequence variability of Hungarian RSV G and F proteins between 2017 and 2023: single-center study
inferred← citeshttps://doi.org/10.1016/j.ijpara.2025.04.004openalex-snapshot
Evolution of antigenic diversity in the zoonotic multi-host parasite Schistosoma japonicum: implications for vaccine design
inferred← citeshttps://doi.org/10.1016/j.insi.2025.100160openalex-snapshot
The role of Marburg virus glycoprotein diversity on epitopes conservation and its impact on effectiveness of vaccines and therapeutic antibodies: A call for one health strategy in vaccines research, development, and coordinated implementation
inferred← citeshttps://doi.org/10.1016/j.intimp.2025.115591openalex-snapshot
Genetic variability of respiratory syncytial virus and its impact on monoclonal antibody binding sites: a national cross-sectional study during the 2023–2024 season
inferred← citeshttps://doi.org/10.1016/j.isci.2021.102811openalex-snapshot
New binding specificities evolve via point mutation in an invertebrate allorecognition gene
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104521openalex-snapshot
Comparisons of chemosensory gene repertoires in human and non-human feeding Anopheles mosquitoes link olfactory genes to anthropophily
inferred← citeshttps://doi.org/10.1016/j.isci.2022.105087openalex-snapshot
Evolutionary analyses reveal immune cell receptor GPR84 as a conserved receptor for bacteria-derived molecules
inferred← citeshttps://doi.org/10.1016/j.isci.2023.106210openalex-snapshot
Genomic diversity of SARS-CoV-2 can be accelerated by mutations in the nsp14 gene
inferred← citeshttps://doi.org/10.1016/j.isci.2023.108319openalex-snapshot
Genomic and transcriptomic characterization of delta SARS-CoV-2 infection in free-ranging white-tailed deer (Odocoileus virginianus)
inferred← citeshttps://doi.org/10.1016/j.isci.2026.116030openalex-snapshot
Comparative analysis reveals molecular adaptation of mammalian HCA2 to microbial metabolites
inferred← citeshttps://doi.org/10.1016/j.japb.2020.01.006openalex-snapshot
The first complete mitochondrial genome sequence of the endangered mountain anoa (Bubalus quarlesi) (Artiodactyla: Bovidae) and phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/j.jbc.2024.107593openalex-snapshot
Structural insights into rice KAI2 receptor provide functional implications for perception and signal transduction
inferred← citeshttps://doi.org/10.1016/j.jcv.2026.106004openalex-snapshot
Resurgence and molecular epidemiology of dengue virus serotype 4 amid the COVID-19 pandemic in Thailand
inferred← citeshttps://doi.org/10.1016/j.jhep.2025.07.004openalex-snapshot
Enhanced surveillance, subtyping, and host adaptation analysis reveal genotype-wide zoonotic potential of rat hepatitis E virus
inferred← citeshttps://doi.org/10.1016/j.jinf.2019.11.025openalex-snapshot
Characterization of diversity of measles viruses in India: Genomic sequencing and comparative genomics studies
inferred← citeshttps://doi.org/10.1016/j.jinf.2020.03.058openalex-snapshot
Evolutionary analysis of SARS-CoV-2: how mutation of Non-Structural Protein 6 (NSP6) could affect viral autophagy
inferred← citeshttps://doi.org/10.1016/j.jinf.2025.106457openalex-snapshot
The spread of CTX-M-type extended-spectrum beta-lactamases in China: Epidemiology and evolutionary analyses
inferred← citeshttps://doi.org/10.1016/j.jksus.2023.102710openalex-snapshot
Molecular evolution of the pathogen recognition peptidoglycan proteins regulates the immune response against infectious diseases in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1016/j.jlr.2025.100769openalex-snapshot
Purifying selection of the lysosomal enzymes arylsulfatase A and beta-galactocerebrosidase and their evolutionary impact on myelin integrity
inferred← citeshttps://doi.org/10.1016/j.meegid.2019.03.023openalex-snapshot
Trimeric autotransporter adhesins in Acinetobacter baumannii, coincidental evolution at work
inferred← citeshttps://doi.org/10.1016/j.meegid.2019.103943openalex-snapshot
Genetic variability of the measles virus hemagglutinin gene in B3 genotype strains circulating in Northern Italy
inferred← citeshttps://doi.org/10.1016/j.meegid.2019.104058openalex-snapshot
Polymorphism and natural selection in the merozoite surface protein 3F2 (PVX_97710) locus of Plasmodium vivax among field isolates
inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104467openalex-snapshot
Structural diversity, natural selection and intragenic recombination in the Plasmodium vivax merozoite surface protein 9 locus in Thailand
inferred← citeshttps://doi.org/10.1016/j.meegid.2020.104486openalex-snapshot
Differences of cytotoxic T-lymphocyte pressure and divergent evolution of several CRF07_BC clusters circulating in men who have sex with men in China
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.104749openalex-snapshot
Genomic diversity in a population of Spodoptera frugiperda nucleopolyhedrovirus
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.104762openalex-snapshot
Genomic evolution of avian polyomaviruses with a focus on budgerigar fledgling disease virus
inferred← citeshttps://doi.org/10.1016/j.meegid.2021.105069openalex-snapshot
Evolution of innate and adaptive immune genes in a non-model waterbird, the common tern
inferred← citeshttps://doi.org/10.1016/j.meegid.2022.105255openalex-snapshot
Carnivore protoparvovirus 1 in Peruvian dogs: Temporal/geographical and evolutionary dynamics of virus
inferred← citeshttps://doi.org/10.1016/j.meegid.2022.105313openalex-snapshot
The impact of genetic recombination on pathogenic Leptospira
inferred← citeshttps://doi.org/10.1016/j.meegid.2023.105503openalex-snapshot
Genetic diversity and molecular evolution of Seoul virus in Hebei province, China
inferred← citeshttps://doi.org/10.1016/j.meegid.2024.105675openalex-snapshot
Feline bocaviruses found in Thailand have undergone genetic recombination for their evolutions
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