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The European Large Subunit Ribosomal RNA Database
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf02198846openalex-snapshot
The evolution of stramenopiles and alveolates as derived by “substitution rate calibration» of small ribosomal subunit RNA
inferredcites →https://doi.org/10.1016/s0022-2836(05)80097-xopenalex-snapshot
Fourteen internal transcribed spacers in the circular ribosomal DNA of Euglena gracilis
inferredcites →https://doi.org/10.1093/bioinformatics/9.6.735openalex-snapshot
DCSE, an interactive tool for sequence alignment and secondary structure research
inferredcites →https://doi.org/10.1093/nar/25.22.4679openalex-snapshot
RnaViz, a program for the visualisation of RNA secondary structure
inferredcites →https://doi.org/10.1093/nar/28.1.10openalex-snapshot
Database resources of the National Center for Biotechnology Information
inferredcites →https://doi.org/10.1093/nar/28.1.19openalex-snapshot
The EMBL Nucleotide Sequence Database
inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot
Database resources of the National Center for Biotechnology Information: update
inferredcites →https://doi.org/10.1126/science.289.5481.905openalex-snapshot
The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 Å Resolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s13127-015-0247-1zenodo-depositor-declared
A short LSU rRNA fragment as a standard marker for integrative taxonomy in calcareous sponges (Porifera: Calcarea)
inferred← citeshttps://doi.org/10.1002/3527600906.mcb.200500009openalex-snapshot
RNA Secondary Structures
inferred← citeshttps://doi.org/10.1002/9781118010518.ch45openalex-snapshot
SILVA: Comprehensive Databases for Quality Checked and Aligned Ribosomal RNA Sequence Data Compatible with ARB
inferred← citeshttps://doi.org/10.1002/widm.1142openalex-snapshot
Noncoding RNAs and their annotation using metagenomics algorithms
inferred← citeshttps://doi.org/10.1007/978-94-007-5931-2_1openalex-snapshot
Management of Microbial Resources in the Environment: A Broad Perspective
inferred← citeshttps://doi.org/10.1007/bf03191858openalex-snapshot
Structure of ribosomal RNA gene and phytogeny ofNosema isolates in Korea
inferred← citeshttps://doi.org/10.1007/s00239-001-0048-3openalex-snapshot
Evolved RNA Secondary Structure and the Rooting of the Universal Tree of Life
inferred← citeshttps://doi.org/10.1007/s00239-004-0119-3openalex-snapshot
Large Subunit Mitochondrial rRNA Secondary Structures and Site-Specific Rate Variation in Two Lizard Lineages
inferred← citeshttps://doi.org/10.1007/s00239-004-2604-0openalex-snapshot
Comparative Analysis of the Ribosomal Componentsof the Hydrogenosome-Containing Protist, Trichomonas vaginalis
inferred← citeshttps://doi.org/10.1007/s00239-005-0072-9openalex-snapshot
The Complete Mitochondrial Genome of the Entomopathogenic Nematode Steinernema carpocapsae: Insights into Nematode Mitochondrial DNA Evolution and Phylogeny
inferred← citeshttps://doi.org/10.1007/s00239-006-0146-3openalex-snapshot
Phylogenetic Analyses Under Secondary Structure-Specific Substitution Models Outperform Traditional Approaches: Case Studies with Diploblast LSU
inferred← citeshttps://doi.org/10.1007/s00285-015-0894-zopenalex-snapshot
RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup
inferred← citeshttps://doi.org/10.1007/s00606-012-0754-xopenalex-snapshot
Phylogenetic relationships among Myrceugenia, Blepharocalyx, and Luma (Myrtaceae) based on paired-sites models and the secondary structures of ITS and ETS sequences
inferred← citeshttps://doi.org/10.1007/s00606-014-1123-8openalex-snapshot
Intra-individual ITS polymorphism and hybridization in Pulmonaria obscura Dumort. and Pulmonaria angustifolia L. (Boraginaceae)
inferred← citeshttps://doi.org/10.1007/s10126-004-0034-zopenalex-snapshot
Specific Detection of Pacific Oyster (Crassostrea gigas) Larvae in Plankton Samples Using Nested Polymerase Chain Reaction
inferred← citeshttps://doi.org/10.1007/s10228-008-0073-yopenalex-snapshot
Genetic identification of fish eggs collected in Sendai Bay and off Johban, Japan
inferred← citeshttps://doi.org/10.1007/s10265-008-0156-xopenalex-snapshot
Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions
inferred← citeshttps://doi.org/10.1007/s10267-003-0105-4openalex-snapshot
Umbelopsis gibberispora sp. nov. from Japanese leaf litter and a clarification of Micromucor ramannianus var. angulisporus
inferred← citeshttps://doi.org/10.1007/s10499-005-9002-5openalex-snapshot
Bacteria associated with early life stages of the great scallop, Pecten maximus: impact on larval survival
inferred← citeshttps://doi.org/10.1007/s10530-004-3119-8openalex-snapshot
Development and Evaluation of a PCR Based Assay for Detection of the Toxic Dinoflagellate, Gymnodinium catenatum(Graham) in Ballast Water and Environmental Samples
inferred← citeshttps://doi.org/10.1007/s11177-005-0172-zopenalex-snapshot
Variation of 3′-Terminal Fragment of 16S rRNA Gene in Closely Related Species of Drosophila virilis Group
inferred← citeshttps://doi.org/10.1007/s11230-016-9668-2openalex-snapshot
Alloionema similis n. sp., a genetically divergent sibling species of A. appendiculatum Schneider, 1859 (Rhabditida: Alloionematidae) from invasive slugs in California, USA
inferred← citeshttps://doi.org/10.1007/s11418-019-01298-4openalex-snapshot
Genetic polymorphism of Japanese cultivated Rheum species in the internal transcribed spacer region of nuclear ribosomal DNA
inferred← citeshttps://doi.org/10.1007/s11427-012-4366-zopenalex-snapshot
Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics
inferred← citeshttps://doi.org/10.1007/s11427-016-0007-7openalex-snapshot
Cyprininae phylogeny revealed independent origins of the Tibetan Plateau endemic polyploid cyprinids and their diversifications related to the Neogene uplift of the plateau
inferred← citeshttps://doi.org/10.1007/s12601-012-0001-yopenalex-snapshot
Molecular characterization and morphology of the photosynthetic dinoflagellate Bysmatrum caponii from two solar saltons in western Korea
inferred← citeshttps://doi.org/10.1007/s13127-016-0288-0openalex-snapshot
Testing heterogeneous base composition as potential cause for conflicting phylogenetic signal between mitochondrial and nuclear DNA in the land snail genus Theba Risso 1826 (Gastropoda: Stylommatophora: Helicoidea)
inferred← citeshttps://doi.org/10.1007/s13127-016-0301-7openalex-snapshot
Molecular phylogenies challenge the classification of Polymastiidae (Porifera, Demospongiae) based on morphology
inferred← citeshttps://doi.org/10.1016/j.bse.2008.03.007openalex-snapshot
Implications of complete nuclear large subunit ribosomal RNA molecules from the harmful unarmored dinoflagellate Cochlodinium polykrikoides (Dinophyceae) and relatives
inferred← citeshttps://doi.org/10.1016/j.bulm.2003.08.015openalex-snapshot
Investigation of the Bernoulli model for RNA secondary structures
inferred← citeshttps://doi.org/10.1016/j.exppara.2013.07.025openalex-snapshot
Secondary structure prediction for complete rDNA sequences (18S, 5.8S, and 28S rDNA) of Demodex folliculorum, and comparison of divergent domains structures across Acari
inferred← citeshttps://doi.org/10.1016/j.fgb.2003.12.005openalex-snapshot
The novel organization and complete sequence of the ribosomal RNA gene of Nosema bombycis
inferred← citeshttps://doi.org/10.1016/j.gene.2004.06.056openalex-snapshot
Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication
inferred← citeshttps://doi.org/10.1016/j.gene.2005.04.033openalex-snapshot
Genetic characterization of the mitochondrial DNA from Lepeophtheirus salmonis (Crustacea; Copepoda). A new gene organization revealed
inferred← citeshttps://doi.org/10.1016/j.gene.2006.04.005openalex-snapshot
The mitochondrial genome of the entomophagous endoparasite Xenos vesparum (Insecta: Strepsiptera)
inferred← citeshttps://doi.org/10.1016/j.hal.2018.02.003openalex-snapshot
Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2017.06.1198openalex-snapshot
25 years of serving the community with ribosomal RNA gene reference databases and tools
inferred← citeshttps://doi.org/10.1016/j.jembe.2004.03.024openalex-snapshot
Genetic markers in blue crabs (Callinectes sapidus)
inferred← citeshttps://doi.org/10.1016/j.jmb.2012.09.012openalex-snapshot
The Right Angle (RA) Motif: A Prevalent Ribosomal RNA Structural Pattern Found in Group I Introns
inferred← citeshttps://doi.org/10.1016/j.mcp.2011.06.002openalex-snapshot
An assessment of genetic differences among ixodid ticks in a locus within the nuclear large subunit ribosomal RNA gene
inferred← citeshttps://doi.org/10.1016/j.parint.2007.09.002openalex-snapshot
In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project
inferred← citeshttps://doi.org/10.1016/j.protis.2005.05.003openalex-snapshot
Improving the Analysis of Dinoflagellate Phylogeny based on rDNA
inferred← citeshttps://doi.org/10.1016/j.protis.2005.09.001openalex-snapshot
A Plastid in the Making: Evidence for a Second Primary Endosymbiosis
inferred← citeshttps://doi.org/10.1016/j.protis.2008.05.002openalex-snapshot
Analysis of the Internal Transcribed Spacer 2 (ITS2) Region of Scuticociliates and Related Taxa (Ciliophora, Oligohymenophorea) to Infer their Evolution and Phylogeny
inferred← citeshttps://doi.org/10.1016/j.protis.2008.12.004openalex-snapshot
Are Prorocentroid Dinoflagellates Monophyletic? A Study of 25 Species Based on Nuclear and Mitochondrial Genes
inferred← citeshttps://doi.org/10.1016/j.protis.2010.02.002openalex-snapshot
Reconstructing Euglenoid Evolutionary Relationships using Three Genes: Nuclear SSU and LSU, and Chloroplast SSU rDNA Sequences and the Description of Euglenaria gen. nov. (Euglenophyta)
inferred← citeshttps://doi.org/10.1016/j.thbio.2005.01.002openalex-snapshot
Evolutionary patterns of non-coding RNAs
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.01.002openalex-snapshot
Phylogenetic investigations of Antarctic notothenioid fishes (Perciformes: Notothenioidei) using complete gene sequences of the mitochondrial encoded 16S rRNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.10.002openalex-snapshot
Complete nucleotide sequence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.11.003openalex-snapshot
Probing the relationships of the branchiopod crustaceans
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.06.006openalex-snapshot
Molecular phylogeny of the Branchiopoda (Crustacea)–Multiple approaches suggest a ‘diplostracan’ ancestry of the Notostraca
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.02.015openalex-snapshot
Phylogeny of “core Gruiformes” (Aves: Grues) and resolution of the Limpkin–Sungrebe problem
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.04.016openalex-snapshot
Molecular phylogeny of the Siphonocladales (Chlorophyta: Cladophorophyceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.08.018openalex-snapshot
Molecular phylogeny of Australian Helicarionidae, Euconulidae and related groups (Gastropoda: Pulmonata: Stylommatophora) based on mitochondrial DNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.033openalex-snapshot
Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.02.030openalex-snapshot
Analysis of the secondary structure of ITS transcripts in peritrich ciliates (Ciliophora, Oligohymenophorea): Implications for structural evolution and phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.10.017openalex-snapshot
Utility of combining morphological characters, nuclear and mitochondrial genes: An attempt to resolve the conflicts of species identification for ciliated protists
inferred← citeshttps://doi.org/10.1016/s0020-7519(00)00100-4openalex-snapshot
The plastid in Apicomplexa: what use is it?
inferred← citeshttps://doi.org/10.1016/s0022-2836(02)00308-xopenalex-snapshot
Secondary Structure Prediction for Aligned RNA Sequences
inferred← citeshttps://doi.org/10.1016/s0022-2836(03)00667-3openalex-snapshot
Unique Tertiary and Neighbor Interactions Determine Conservation Patterns of Cis Watson–Crick A/G Base-pairs
inferred← citeshttps://doi.org/10.1016/s0022-2836(03)00863-5openalex-snapshot
Mutational Analysis Defines the Roles of Conserved Amino Acid Residues in the Predicted Catalytic Pocket of the rRNA:m6A Methyltransferase ErmC′
inferred← citeshttps://doi.org/10.1016/s0022-5193(03)00057-2openalex-snapshot
Advanced formulation of base pair changes in the stem regions of ribosomal RNAs; its application to mitochondrial rRNAs for resolving the phylogeny of animals
inferred← citeshttps://doi.org/10.1016/s0065-2423(06)43003-1openalex-snapshot
Oligonucleotide Probes for RNA‐Targeted Fluorescence In Situ Hybridization
inferred← citeshttps://doi.org/10.1016/s0300-9084(02)01463-3openalex-snapshot
Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules
inferred← citeshttps://doi.org/10.1016/s0378-1119(00)00063-9openalex-snapshot
Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi
inferred← citeshttps://doi.org/10.1016/s0723-2020(00)80031-4openalex-snapshot
A Nested Array of rRNA Targeted Probes for the Detection and Identification of Enterococci by Reverse Hybridization
inferred← citeshttps://doi.org/10.1016/s0890-8508(02)00107-xopenalex-snapshot
First complete large subunit ribosomal RNA sequence and secondary structure for a parasitic nematode: phylogenetic and diagnostic implications
inferred← citeshttps://doi.org/10.1016/s0959-440x(00)00088-9openalex-snapshot
Calculating nucleic acid secondary structure
inferred← citeshttps://doi.org/10.1016/s1055-7903(03)00029-0openalex-snapshot
Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae)
inferred← citeshttps://doi.org/10.1016/s1567-1356(03)00113-2openalex-snapshot
The D1/D2 domain of the large-subunit rDNA of the yeast species is unusually polymorphic
inferred← citeshttps://doi.org/10.1016/s1874-5334(03)80017-5openalex-snapshot
Fungal Germplasm and Databases
inferred← citeshttps://doi.org/10.1017/s135583820202602xopenalex-snapshot
GU receptors of double helices mediate tRNA movement in the ribosome
inferred← citeshttps://doi.org/10.1046/j.0962-1075.2001.00294.xopenalex-snapshot
Phylogenetic relationships among fruit flies, Bactrocera (Diptera, Tephritidae), based on the mitochondrial rDNA sequences
inferred← citeshttps://doi.org/10.1046/j.1365-2583.2003.00432.xopenalex-snapshot
Comparative analysis of mt LSU rRNA secondary structures of Odonates: structural variability and phylogenetic signal
inferred← citeshttps://doi.org/10.1046/j.1365-294x.2002.01641.xopenalex-snapshot
A DNA‐based method for identification of krill species and its application to analysing the diet of marine vertebrate predators
inferred← citeshttps://doi.org/10.1071/mf03031openalex-snapshot
Development and evaluation of a PCR-based test for detection of Asterias (Echinodermata : Asteroidea) larvae in Australian plankton samples from ballast water
inferred← citeshttps://doi.org/10.1071/mf05045openalex-snapshot
Specific amplification of mt-COI gene of the invasive gastropod Maoricolpus roseus in planktonic samples reveals a free-living larval life-history stage
inferred← citeshttps://doi.org/10.1074/jbc.m110.146662openalex-snapshot
Yeast 18 S rRNA Is Directly Involved in the Ribosomal Response to Stringent AUG Selection during Translation Initiation
inferred← citeshttps://doi.org/10.1078/0723202041748172openalex-snapshot
Comparative Sequence Analysis and Oligonucleotide Probe Design Based on 23S rRNA Genes of Alphaproteobacteria from North Sea Bacterioplankton
inferred← citeshttps://doi.org/10.1078/1434-4610-00091openalex-snapshot
Evolutionary Relationships among Heterokont Algae (the Autotrophic Stramenopiles) Based on Combined Analyses of Small and Large Subunit Ribosomal RNA
inferred← citeshttps://doi.org/10.1078/1434461041844231openalex-snapshot
Ultrastructure of Gyrodinium spirale, the Type Species of Gyrodinium (Dinophyceae), Including a Phylogeny of G. dominans, G. rubrum and G. spirale Deduced from Partial LSU rDNA Sequences
inferred← citeshttps://doi.org/10.1080/00318884.2019.1565718openalex-snapshot
Surviving the marine environment: two new species of Mallomonas (Synurophyceae)
inferred← citeshttps://doi.org/10.1080/00837792.2015.1004845openalex-snapshot
Taxonomic reappraisal of Monostromataceae (Ulvophyceae: Chlorophyta) based on multi-locus phylogeny
inferred← citeshttps://doi.org/10.1080/09593330.2017.1308442openalex-snapshot
Novel design and optimisation of a nitritation/anammox set-up for ammonium removal from filtrate of digested sludge
inferred← citeshttps://doi.org/10.1080/09670260600556682openalex-snapshot
Studies on woloszynskioid dinoflagellates II: OnTovellia sanguineasp. nov., the dinoflagellate responsible for the reddening of Lake Tovel, N. Italy
inferred← citeshttps://doi.org/10.1080/09670262.2014.910610openalex-snapshot
Studies on woloszynskioid dinoflagellates VI: description ofTovellia aveirensissp. nov. (Dinophyceae), a new species of Tovelliaceae with spiny cysts
inferred← citeshttps://doi.org/10.1080/09670262.2014.969781openalex-snapshot
Studies on woloszynskioid dinoflagellates VII. Description of Borghiella andersenii sp. nov.: light and electron microscopy and phylogeny based on LSU rDNA
inferred← citeshttps://doi.org/10.1080/09670262.2016.1201700openalex-snapshot
Multigene phylogeny ofSynura(Synurophyceae) and descriptions of four new species based on morphological and DNA evidence
inferred← citeshttps://doi.org/10.1080/10425170600909326openalex-snapshot
Complete sequence and secondary structure of the large subunit ribosomal RNA from the harmful unarmored dinoflagellateAkashiwo sanguinea
inferred← citeshttps://doi.org/10.1080/1364253031000136321openalex-snapshot
Linnaeus was right all along:UlvaandEnteromorphaare not distinct genera
inferred← citeshttps://doi.org/10.1080/1364253031000136376openalex-snapshot
Phylogeny of the Cladophorophyceae (Chlorophyta) inferred from partial LSU rRNA gene sequences: is the recognition of a separate order Siphonocladales justified?
inferred← citeshttps://doi.org/10.1080/17451000.2010.528773openalex-snapshot
An approach to the study of copepod egg banks based on efficient DNA extraction from individual copepod eggs
inferred← citeshttps://doi.org/10.1080/714031127openalex-snapshot
A review of nucleic acid-based diagnostic tests for systemic mycoses with an emphasis on polymerase chain reaction-based assays
inferred← citeshttps://doi.org/10.1093/g3journal/jkae305openalex-snapshot
Effect of copper and nickel exposure on ribosomal DNA variation in Daphnia pulex mutation accumulation lines
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf279openalex-snapshot
Copy number and sequence variation in ribosomal DNA and the transposon, Pokey , in mutation accumulation lines of Daphnia obtusa
inferred← citeshttps://doi.org/10.1093/molbev/msg122openalex-snapshot
Pseudogenes Contribute to the Extreme Diversity of Nuclear Ribosomal DNA in the Hard Coral Acropora
inferred← citeshttps://doi.org/10.1093/molbev/msh029openalex-snapshot
Empirical Models for Substitution in Ribosomal RNA
inferred← citeshttps://doi.org/10.1093/molbev/msi023openalex-snapshot
Root of the Eukaryota Tree as Inferred from Combined Maximum Likelihood Analyses of Multiple Molecular Sequence Data
inferred← citeshttps://doi.org/10.1093/molbev/msj040openalex-snapshot
On the Correlation Between Composition and Site-Specific Evolutionary Rate: Implications for Phylogenetic Inference
inferred← citeshttps://doi.org/10.1093/nar/28.23.4698openalex-snapshot
Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
inferred← citeshttps://doi.org/10.1093/nar/29.24.5017openalex-snapshot
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
inferred← citeshttps://doi.org/10.1093/nar/30.9.2076openalex-snapshot
Searching for RNA genes using base-composition statistics
inferred← citeshttps://doi.org/10.1093/nar/gkf693openalex-snapshot
Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale
inferred← citeshttps://doi.org/10.1093/nar/gkg614openalex-snapshot
Pfold: RNA secondary structure prediction using stochastic context-free grammars
inferred← citeshttps://doi.org/10.1093/nar/gkh293openalex-snapshot
ARB: a software environment for sequence data
inferred← citeshttps://doi.org/10.1093/nar/gkl025openalex-snapshot
Structural and evolutionary classification of G/U wobble basepairs in the ribosome
inferred← citeshttps://doi.org/10.1093/nar/gkm245openalex-snapshot
Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA
inferred← citeshttps://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferred← citeshttps://doi.org/10.1093/nar/gkp1067openalex-snapshot
Tfold: efficient in silico prediction of non-coding RNA secondary structures
inferred← citeshttps://doi.org/10.1093/nar/gkt513openalex-snapshot
Secondary structure and domain architecture of the 23S and 5S rRNAs
inferred← citeshttps://doi.org/10.1093/nar/gku1249openalex-snapshot
The separation between the 5′-3′ ends in long RNA molecules is short and nearly constant
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a003922openalex-snapshot
Bacterial Origin for the Isoprenoid Biosynthesis Enzyme HMG-CoA Reductase of the Archaeal Orders Thermoplasmatales and Archaeoglobales
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a004230openalex-snapshot
Factors Affecting the Errors in the Estimation of Evolutionary Distances Between Sequences
inferred← citeshttps://doi.org/10.1093/plankt/fbq165openalex-snapshot
DNA extraction, amplification and analysis of the 28S rRNA portion in sediment-buried copepod DNA in the Great Wall Bay and Xihu Lake, Antarctica
inferred← citeshttps://doi.org/10.1098/rspb.2001.1587openalex-snapshot
Complete mitochondrial DNA geonome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis
inferred← citeshttps://doi.org/10.1098/rspb.2002.1961openalex-snapshot
Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds
inferred← citeshttps://doi.org/10.1098/rspb.2002.2297openalex-snapshot
Structural rRNA characters support monophyly of raptorial limbs and paraphyly of limb specialization in water fleas
inferred← citeshttps://doi.org/10.1098/rspb.2007.0924openalex-snapshot
Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade
inferred← citeshttps://doi.org/10.1099/00207713-51-3-737openalex-snapshot
Phylogenetic relationships among algae based on complete large-subunit rRNA sequences.
inferred← citeshttps://doi.org/10.1099/ijs.0.02518-0openalex-snapshot
Phylogeny of the photosynthetic euglenophytes inferred from the nuclear SSU and partial LSU rDNA
inferred← citeshttps://doi.org/10.1109/iembs.2004.1403796openalex-snapshot
Corpus based learning of stochastic context-free grammar combined with hidden Markov models for tRNA modelling
inferred← citeshttps://doi.org/10.1109/ita.2007.4357589openalex-snapshot
Parametrized Stochastic Grammars for RNA Secondary Structure Prediction
inferred← citeshttps://doi.org/10.1109/tcbb.2010.126openalex-snapshot
Analysis of the Free Energy in a Stochastic RNA Secondary Structure Model
inferred← citeshttps://doi.org/10.1111/1755-0998.12640openalex-snapshot
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
inferred← citeshttps://doi.org/10.1111/j.0014-3820.2005.tb01825.xopenalex-snapshot
FOSSIL CALIBRATIONS AND MOLECULAR DIVERGENCE TIME ESTIMATES IN CENTRARCHID FISHES (TELEOSTEI: CENTRARCHIDAE)
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2007.00843.xopenalex-snapshot
Phylogenetic relationships and rate of early diversification of Australian Sphenomorphus group scincids (Scincoidea, Squamata)
inferred← citeshttps://doi.org/10.1111/j.1365-2583.2006.00689.xopenalex-snapshot
Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2004.02109.xopenalex-snapshot
Group‐specific polymerase chain reaction for DNA‐based analysis of species diversity and identity in dietary samples
inferred← citeshttps://doi.org/10.1111/j.1440-1835.2006.00423.xopenalex-snapshot
Undaria mitochondrial large subunit ribosomal DNA (Phaeophyceae, Alariaceae): Structural properties and use for phylogenetic analysis
inferred← citeshttps://doi.org/10.1111/j.1440-1835.2009.00540.xopenalex-snapshot
Studies on woloszynskioid dinoflagellates IV: The genus Biecheleria gen. nov.
inferred← citeshttps://doi.org/10.1111/j.1444-2906.2005.01103.xopenalex-snapshot
Identification of Undaria pinnatifida and Undaria undarioides Laminariales, Phaeophyceae using mitochondrial 23S ribosomal DNA sequences
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2004.03131.xopenalex-snapshot
AMPHIDINIUM REVISITED. I. REDEFINITION OF AMPHIDINIUM (DINOPHYCEAE) BASED ON CLADISTIC AND MOLECULAR PHYLOGENETIC ANALYSES1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2004.03142.xopenalex-snapshot
PHYLOGENETIC ANALYSIS OF THE GENUS EUGLENA (EUGLENOPHYCEAE) WITH PARTICULAR REFERENCE TO THE TYPE SPECIES EUGLENA VIRIDIS 1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2006.00172.xopenalex-snapshot
ON THE IDENTITY OFKARLODINIUM VENEFICUMAND DESCRIPTION OFKARLODINIUM ARMIGERSP. NOV. (DINOPHYCEAE), BASED ON LIGHT AND ELECTRON MICROSCOPY, NUCLEAR‐ENCODED LSU RDNA, AND PIGMENT COMPOSITION1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2006.00195.xopenalex-snapshot
ULTRASTRUCTURE AND LSU RDNA‐BASED PHYLOGENY OF ESOPTRODINIUM GEMMA (DINOPHYCEAE), WITH NOTES ON FEEDING BEHAVIOR AND THE DESCRIPTION OF THE FLAGELLAR BASE AREA OF A PLANOZYGOTE 1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2006.00219.xopenalex-snapshot
PHYLOGENY OF THE EUGLENALES BASED UPON COMBINED SSU AND LSU RDNA SEQUENCE COMPARISONS AND DESCRIPTION OF DISCOPLASTIS GEN. NOV. (EUGLENOPHYTA) 1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2008.00472.xopenalex-snapshot
PHYLOGENY OF THE EUGLENOID LORICATE GENERA TRACHELOMONAS AND STROMBOMONAS (EUGLENOPHYTA) INFERRED FROM NUCLEAR SSU AND LSU rDNA1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2008.00536.xopenalex-snapshot
PHYLOGENY OF THE EUGLENALES INFERRED FROM PLASTID LSU rDNA SEQUENCES1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2009.00735.xopenalex-snapshot
DESCRIPTION OF TYRANNODINIUM GEN. NOV., A FRESHWATER DINOFLAGELLATE CLOSELY RELATED TO THE MARINE PFIESTERIA ‐LIKE SPECIES 1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2009.00739.xopenalex-snapshot
ULTRASTRUCTURE AND LSU rDNA–BASED REVISION OF PERIDINIUM GROUP PALATINUM (DINOPHYCEAE) WITH THE DESCRIPTION OF PALATINUS GEN. NOV. 1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2010.00910.xopenalex-snapshot
MULTIGENE ANALYSES OF PHOTOSYNTHETIC EUGLENOIDS AND NEW FAMILY, PHACACEAE (EUGLENALES)1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2010.00953.xopenalex-snapshot
STUDIES ON ULTRASTRUCTURE AND THREE-GENE PHYLOGENY OF THE GENUS MALLOMONAS (SYNUROPHYCEAE)1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2011.01101.xopenalex-snapshot
A NEW METHOD FOR OBTAINING NUCLEAR GENE SEQUENCES FROM FIELD SAMPLES AND TAXONOMIC REVISIONS OF THE PHOTOSYNTHETIC EUGLENOIDS LEPOCINCLIS (EUGLENA) HELICOIDEUS AND LEPOCINCLIS (PHACUS) HORRIDUS (EUGLENOPHYTA)1
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2005.3291rr.xopenalex-snapshot
Complete Sequence and Gene Organization of the Nosema spodopterae rRNA Gene
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2007.00251.xopenalex-snapshot
Informative Characteristics of 12 Divergent Domains in Complete Large Subunit rDNA Sequences from the Harmful Dinoflagellate Genus, Alexandrium (Dinophyceae)
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2009.00462.xopenalex-snapshot
Description of a New Planktonic Mixotrophic Dinoflagellate Paragymnodinium shiwhaense n. gen., n. sp. from the Coastal Waters off Western Korea: Morphology, Pigments, and Ribosomal DNA Gene Sequence
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2011.00531.xopenalex-snapshot
Mixotrophy in the Newly Described Phototrophic Dinoflagellate Woloszynskia cincta from Western Korean Waters: Feeding Mechanism, Prey Species and Effect of Prey Concentration
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2011.00544.xopenalex-snapshot
Gyrodiniellum shiwhaense n. gen., n. sp., A New Planktonic Heterotrophic Dinoflagellate from the Coastal Waters of Western Korea: Morphology and Ribosomal DNA Gene Sequence
inferred← citeshttps://doi.org/10.1111/j.1567-1364.2010.00644.xopenalex-snapshot
Mitochondrial genome from the facultative anaerobe and petite-positive yeast Dekkera bruxellensis contains the NADH dehydrogenase subunit genes
inferred← citeshttps://doi.org/10.1111/j.1600-0463.2004.apm11211-1210.xopenalex-snapshot
Let them fly or light them up: matrix‐assisted laser desorption/ionization time of flight (MALDI‐TOF) mass spectrometry and fluorescence in situ hybridization (FISH)
inferred← citeshttps://doi.org/10.1111/jpy.12018openalex-snapshot
Phylogenetic Reappraisal of the Genus Monomorphina (Euglenophyceae) Based on Molecular and Morphological Data
inferred← citeshttps://doi.org/10.1111/jpy.12032openalex-snapshot
Cryptic Speciation in the Genus Cryptoglena (Euglenaceae) Revealed by Nuclear and Plastid SSU and LSU rRNA Gene
inferred← citeshttps://doi.org/10.1111/jpy.12227openalex-snapshot
Molecular Phylogeny and Cryptic Diversity of the Genus P hacus ( P hacaceae, E uglenophyceae) and the Descriptions of Seven New Species
inferred← citeshttps://doi.org/10.1128/9781555815882.ch12openalex-snapshot
Molecular Approaches for the Measurement of Density, Diversity, and Phylogeny
inferred← citeshttps://doi.org/10.1128/9781555816834.ch1openalex-snapshot
Applications of Fluorescence In Situ Hybridization in Diagnostic Microbiology
inferred← citeshttps://doi.org/10.1128/9781555817497.ch36openalex-snapshot
Reconstructing and Interpreting Evolutionary Relationships
inferred← citeshttps://doi.org/10.1139/b07-134openalex-snapshot
5.8S motifs for the identification of pseudogenic ITS regions
inferred← citeshttps://doi.org/10.1139/g00-106openalex-snapshot
Dynamic microsatellites in transcribed regions of gastropod mitochondrial 16S rDNA
inferred← citeshttps://doi.org/10.1177/230949901101900105openalex-snapshot
Risk Factors of Venous Thromboembolism in Indian Patients with Pelvic-Acetabular Trauma
inferred← citeshttps://doi.org/10.1186/1471-2105-3-2openalex-snapshot
The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
inferred← citeshttps://doi.org/10.1186/1471-2105-5-140openalex-snapshot
A comprehensive comparison of comparative RNA structure prediction approaches
inferred← citeshttps://doi.org/10.1186/1471-2105-5-71openalex-snapshot
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
inferred← citeshttps://doi.org/10.1186/1471-2105-7-240openalex-snapshot
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
inferred← citeshttps://doi.org/10.1186/1471-2105-7-400openalex-snapshot
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
inferred← citeshttps://doi.org/10.1186/1471-2148-10-342openalex-snapshot
Molecular phylogeny of pearl oysters and their relatives (Mollusca, Bivalvia, Pterioidea)
inferred← citeshttps://doi.org/10.1186/1471-2148-11-146openalex-snapshot
Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: Evidence from case studies in the Metazoa
inferred← citeshttps://doi.org/10.1186/1471-2148-8-24openalex-snapshot
Deep genetic divergences among Indo-Pacific populations of the coral reef sponge Leucetta chagosensis (Leucettidae): Founder effects, vicariance, or both?
inferred← citeshttps://doi.org/10.1186/1471-2148-8-310openalex-snapshot
Rapid and repeated limb loss in a clade of scincid lizards
inferred← citeshttps://doi.org/10.1186/1748-7188-6-24openalex-snapshot
Random generation of RNA secondary structures according to native distributions
inferred← citeshttps://doi.org/10.1261/rna.2183806openalex-snapshot
Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories
inferred← citeshttps://doi.org/10.1261/rna.2202703openalex-snapshot
On the occurrence of the T-loop RNA folding motif in large RNA molecules
inferred← citeshttps://doi.org/10.1261/rna.2210406openalex-snapshot
A computational screen for mammalian pseudouridylation guide H/ACA RNAs
inferred← citeshttps://doi.org/10.1261/rna.2458811openalex-snapshot
The roles of S1 RNA-binding domains in Rrp5's interactions with pre-rRNA
inferred← citeshttps://doi.org/10.1360/zc2012-42-8-648openalex-snapshot
基于分区贝叶斯法和最大似然法的鲤科鱼类系统发育分析及其系统学意义
inferred← citeshttps://doi.org/10.1371/journal.pcbi.0030056openalex-snapshot
Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
inferred← citeshttps://doi.org/10.1371/journal.pcbi.0030056.eoropenalex-snapshot
Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
inferred← citeshttps://doi.org/10.1371/journal.pone.0017863openalex-snapshot
The ITS1-5.8S-ITS2 Sequence Region in the Musaceae: Structure, Diversity and Use in Molecular Phylogeny
inferred← citeshttps://doi.org/10.1371/journal.pone.0033883openalex-snapshot
Population Genetics of Two Asexually and Sexually Reproducing Psocids Species Inferred by the Analysis of Mitochondrial and Nuclear DNA Sequences
inferred← citeshttps://doi.org/10.1504/ijbra.2005.007908openalex-snapshot
Corpus based learning of stochastic, context-free grammars combined with Hidden Markov Models for tRNA modelling
inferred← citeshttps://doi.org/10.1515/reveh.2003.18.2.131openalex-snapshot
Molecular Microbial Biodiversity Assessment: A Biological Indicator of Soil Health
inferred← citeshttps://doi.org/10.15381/rpb.v17i1.51openalex-snapshot
Análisis de la estructura secundaria del LSU rRNA mitocondrial de caracoles terrestres peruanos (Orthalicidae: Gastropoda)
inferred← citeshttps://doi.org/10.1645/ge-111r3openalex-snapshot
THE FIRST COMPLETE MONOGENEAN RIBOSOMAL RNA GENE OPERON: SEQUENCE AND SECONDARY STRUCTURE OF THE GYRODACTYLUS SALARIS MALMBERG, 1957, LARGE SUBUNIT RIBOSOMAL RNA GENE
inferred← citeshttps://doi.org/10.20944/preprints201805.0350.v1openalex-snapshot
nrDNA-ITS Variation, Structure, and Molecular Phylogeny of Abies beshanzuensis (Pinaceae), a Critically Endangered Species
inferred← citeshttps://doi.org/10.2216/0031-8884(2005)44[416:sowdiw]2.0.co;2openalex-snapshot
Studies on woloszynskioid dinoflagellates I:Woloszynskia coronatare-examined using light and electron microscopy and partial LSU rDNA sequences, with description ofTovelliagen. nov. andJadwigiagen. nov. (Tovelliaceae fam. nov.)
inferred← citeshttps://doi.org/10.2216/06-94.1openalex-snapshot
Light, electron microscopy and DNA sequences of the dinoflagellate Prorocentrum concavum (syn. P. Arabianum) with special emphasis on the periflagellar area
inferred← citeshttps://doi.org/10.2216/12-107.1openalex-snapshot
Phylogeny of the genus Mallomonas (Synurophyceae) and descriptions of five new species on the basis of morphological evidence
inferred← citeshttps://doi.org/10.2216/i0031-8884-42-2-151.1openalex-snapshot
Morphological and LSU rDNA sequence variation within the Gonyaulax spinifera-Spiniferites group (Dinophyceae) and proposal of G. elongata comb. nov. and G. membranacea comb. nov.
inferred← citeshttps://doi.org/10.3354/dao049199openalex-snapshot
Complete sequence and structure of ribosomal RNA gene of Heterosporis anguillarum
inferred← citeshttps://doi.org/10.3389/fevo.2015.00098openalex-snapshot
Taxon-rich multigene phylogeny of the photosynthetic euglenoids (Euglenophyceae)
inferred← citeshttps://doi.org/10.3390/genes14091769openalex-snapshot
Comparative Mitogenome Analysis of Two Native Apple Snail Species (Ampullariidae, Pomacea) from Peruvian Amazon
inferred← citeshttps://doi.org/10.3390/microorganisms7110493openalex-snapshot
Ciliate Environmental Diversity Can Be Underestimated by the V4 Region of SSU rDNA: Insights from Species Delimitation and Multilocus Phylogeny of Pseudokeronopsis (Protist, Ciliophora)
inferred← citeshttps://doi.org/10.3390/pathogens14101009openalex-snapshot
From Bioinformatic Modeling to Clinical Observation: Potential Implications of Ribosomal RNA Folding in Blastocystis sp. Isolates from Symptomatic and Asymptomatic Carriers
inferred← citeshttps://doi.org/10.3732/ajb.0800046openalex-snapshot
In search of monophyletic taxa in the family Desmidiaceae (Zygnematophyceae, Viridiplantae): the genus Cosmarium
inferred← citeshttps://doi.org/10.3732/ajb.1500004openalex-snapshot
Assessing the evolutionary history of the class Synurophyceae (Heterokonta) using molecular, morphometric, and paleobiological approaches
inferred← citeshttps://doi.org/10.4161/trla.26402openalex-snapshot
Random mutagenesis of yeast 25S rRNA identify bases critical for 60S subunit structural integrity and function
inferred← citeshttps://doi.org/10.4319/lo.2002.47.5.1486openalex-snapshot
The systematics of Holarctic bosminids and a revision that reconciles molecular and morphological evolution
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