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5.8S motifs for the identification of pseudogenic ITS regions

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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PHYLIP (Phylogeny Inference Package)

inferredcites →https://doi.org/10.1002/9780471650126.dob0534.pub2openalex-snapshot

PHYLIP ( PHYLogeny Inference Package)

inferredcites →https://doi.org/10.1006/jmbi.1996.0119openalex-snapshot

Comprehensive Comparison of Structural Characteristics in Eukaryotic Cytoplasmic Large Subunit (23 S-like) Ribosomal RNA

inferredcites →https://doi.org/10.1006/jmbi.1999.2700openalex-snapshot

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

inferredcites →https://doi.org/10.1006/mpev.1999.0696openalex-snapshot

Molecular Phylogenetics of Subfamily Calamoideae (Palmae) Based on nrDNA ITS and cpDNA rps16 Intron Sequence Data

inferredcites →https://doi.org/10.1007/bf00013763openalex-snapshot

A conserved sequence in internal transcribed spacer 1 of plant nuclear rRNA genes

inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

inferredcites →https://doi.org/10.1007/s00239-003-2536-0openalex-snapshot

The rDNA ITS Region in the Lessepsian Marine Angiosperm Halophila stipulacea (Forssk.) Aschers. (Hydrocharitaceae): Intragenomic Variability and Putative Pseudogenic Sequences

inferredcites →https://doi.org/10.1007/s002390010200openalex-snapshot

Extensive Ribosomal DNA Genic Variation in the Columnar Cactus Lophocereus

inferredcites →https://doi.org/10.1007/s00606-003-0114-yopenalex-snapshot

A molecular phylogeny of the genus Gagea (Liliaceae) in Germany inferred from non-coding chloroplast and nuclear DNA sequences

inferredcites →https://doi.org/10.1007/s00606-008-0102-3openalex-snapshot

Hybridization drives speciation in Gagea (Liliaceae)

inferredcites →https://doi.org/10.1016/j.gene.2008.10.012openalex-snapshot

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

inferredcites →https://doi.org/10.1016/j.ympev.2003.08.021openalex-snapshot

Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes

inferredcites →https://doi.org/10.1016/j.ympev.2005.03.011openalex-snapshot

The internal transcribed spacer of nuclear ribosomal DNA in the gymnosperm Gnetum

inferredcites →https://doi.org/10.1016/j.ympev.2006.05.036openalex-snapshot

Non-concerted ITS evolution in Mammillaria (Cactaceae)

inferredcites →https://doi.org/10.1016/j.ympev.2006.10.027openalex-snapshot

Divergent paralogues of ribosomal DNA in eucalypts (Myrtaceae)

inferredcites →https://doi.org/10.1016/j.ympev.2007.01.013openalex-snapshot

Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

inferredcites →https://doi.org/10.1016/j.ympev.2008.11.010openalex-snapshot

Comparative study of the evolution of nuclear ribosomal spacers incorporating secondary structure analyzes within Dodonaeoideae, Hippocastanoideae and Xanthoceroideae (Sapindaceae)

inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot

Ribosomal ITS sequences and plant phylogenetic inference

inferredcites →https://doi.org/10.1023/a:1007462330699openalex-snapshot

A Conserved Motif in the 5.8S Ribosomal RNA (rRNA) Gene is a Useful Diagnostic Marker for Plant Internal Transcribed Spacer (ITS) Sequences

inferredcites →https://doi.org/10.1080/10635150490423278openalex-snapshot

Recent Origin and Phylogenetic Utility of Divergent ITS Putative Pseudogenes: A Case Study from Naucleeae (Rubiaceae)

inferredcites →https://doi.org/10.1086/520729openalex-snapshot

Quantitative PCR Revealed a Minority of ITS Copies to Be Functional inMammillaria(Cactaceae)

inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot

MRBAYES: Bayesian inference of phylogenetic trees

inferredcites →https://doi.org/10.1093/genetics/145.3.821openalex-snapshot

The Evolution of Ribosomal DNA Divergent Paralogues and Phylogenetic Implications

inferredcites →https://doi.org/10.1093/molbev/msg122openalex-snapshot

Pseudogenes Contribute to the Extreme Diversity of Nuclear Ribosomal DNA in the Hard Coral Acropora

inferredcites →https://doi.org/10.1093/nar/20.22.6101openalex-snapshot

Nucleotide sequences of the internal transcribed spacers and 5.8S rRNA gene inCanella winterana(Magnoliales; Canellaceae)

inferredcites →https://doi.org/10.1093/nar/29.1.175openalex-snapshot

The European Large Subunit Ribosomal RNA Database

inferredcites →https://doi.org/10.1093/nar/gkg595openalex-snapshot

Mfold web server for nucleic acid folding and hybridization prediction

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003785openalex-snapshot

Three Divergent rDNA Clusters Predate the Species Divergence in Quercus petraea (Matt.) Liebl. and Quercus robur L

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040259openalex-snapshot

Phylogenetic test of the molecular clock and linearized trees.

inferredcites →https://doi.org/10.1111/j.1365-2583.2006.00689.xopenalex-snapshot

Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements

inferredcites →https://doi.org/10.1186/1471-2105-3-2openalex-snapshot

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

inferredcites →https://doi.org/10.1201/9781439833278.ch14openalex-snapshot

Ribosomal DNA Sequences and Angiosperm Systematics

inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot

BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

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The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny

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Length Variation in the Nuclear Ribosomal DNA Internal Transcribed Spacer Region of Non-Flowering Seed Plants

inferredcites →https://doi.org/10.2307/2656583openalex-snapshot

Physical mapping of ribosomal RNA genes in peonies (Paeonia, Paeoniaceae) by fluorescent in situ hybridization: implications for phylogeny and concerted evolution

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Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and nrDNA polymorphism

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Phylogenetic relationships in Myrceugenia (Myrtaceae) based on plastid and nuclear DNA sequences

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Polyphyly, gene-duplication and extensive allopolyploidy framed the evolution of the ephemeral Vulpia grasses and other fine-leaved Loliinae (Poaceae)

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inferred← citeshttps://doi.org/10.5735/085.049.0603openalex-snapshot

A Preliminary Assessment ofmatK,rbcL andtrnH—psbA as DNA Barcodes forCalamus(Arecaceae) Species in China with a Note on ITS

inferred← citeshttps://doi.org/10.7287/peerj.2968v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Geography shapes the phylogeny of frailejones (Espeletiinae Cuatrec., Asteraceae): a remarkable example of recent rapid radiation in sky islands (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.2968v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Geography shapes the phylogeny of frailejones (Espeletiinae Cuatrec., Asteraceae): a remarkable example of recent rapid radiation in sky islands (v0.1)"

inferred← citeshttps://doi.org/10.7717/peerj.2968openalex-snapshot

Geography shapes the phylogeny of frailejones (Espeletiinae Cuatrec., Asteraceae): a remarkable example of recent rapid radiation in sky islands

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.