On the public citation graph

EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure

0 signed · 180 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0612s35openalex-snapshot
Using OrthoMCL to Assign Proteins to OrthoMCL‐DB Groups or to Cluster Proteomes Into New Ortholog Groups
inferredcites →https://doi.org/10.1002/9781118960608.bm00038openalex-snapshot
EDGAR : A Versatile Tool for Phylogenomics
inferredcites →https://doi.org/10.1006/jmbi.2000.3903openalex-snapshot
Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence
inferredcites →https://doi.org/10.1006/jmbi.2000.4315openalex-snapshot
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
inferredcites →https://doi.org/10.1007/978-1-4939-3167-5_2openalex-snapshot
UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View
inferredcites →https://doi.org/10.1016/j.mib.2007.08.006openalex-snapshot
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/s41467-018-07641-9openalex-snapshot
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
inferredcites →https://doi.org/10.1038/s41587-019-0036-zopenalex-snapshot
SignalP 5.0 improves signal peptide predictions using deep neural networks
inferredcites →https://doi.org/10.1073/pnas.0409727102openalex-snapshot
Genomic insights that advance the species definition for prokaryotes
inferredcites →https://doi.org/10.1073/pnas.0506758102openalex-snapshot
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae : Implications for the microbial “pan-genome”
inferredcites →https://doi.org/10.1093/bioinformatics/btu393openalex-snapshot
circlize implements and enhances circular visualization in R
inferredcites →https://doi.org/10.1093/bioinformatics/btv421openalex-snapshot
Roary: rapid large-scale prokaryote pan genome analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btw041openalex-snapshot
BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications
inferredcites →https://doi.org/10.1093/bioinformatics/btx364openalex-snapshot
UpSetR: an R package for the visualization of intersecting sets and their properties
inferredcites →https://doi.org/10.1093/nar/gkaa1105openalex-snapshot
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation
inferredcites →https://doi.org/10.1093/nar/gkaa913openalex-snapshot
Pfam: The protein families database in 2021
inferredcites →https://doi.org/10.1093/nar/gkw255openalex-snapshot
EDGAR 2.0: an enhanced software platform for comparative gene content analyses
inferredcites →https://doi.org/10.1093/nar/gkx1019openalex-snapshot
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
inferredcites →https://doi.org/10.1093/nar/gkx1068openalex-snapshot
RefSeq: an update on prokaryotic genome annotation and curation
inferredcites →https://doi.org/10.1093/nar/gkx977openalex-snapshot
panX: pan-genome analysis and exploration
inferredcites →https://doi.org/10.1093/nar/gky989openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1098/rstb.2006.1920openalex-snapshot
The bacterial species definition in the genomic era
inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot
Circos: An information aesthetic for comparative genomics
inferredcites →https://doi.org/10.1109/tvcg.2014.2346248openalex-snapshot
UpSet: Visualization of Intersecting Sets
inferredcites →https://doi.org/10.1128/aem.02411-13openalex-snapshot
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
inferredcites →https://doi.org/10.1128/jb.01688-14openalex-snapshot
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
inferredcites →https://doi.org/10.1186/1471-2105-10-154openalex-snapshot
EDGAR: A software framework for the comparative analysis of prokaryotic genomes
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-5-198openalex-snapshot
GenomeViz: visualizing microbial genomes
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1371/journal.pbio.1002195openalex-snapshot
Big Data: Astronomical or Genomical?
inferredcites →https://doi.org/10.1371/journal.pcbi.1007134openalex-snapshot
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4815829openalex-extracted
Ecological Adaptation of Phoxinus Minnows: Divergence in Phenotype, Genetics, and Evolution
inferred← citeshttps://doi.org/10.1007/978-1-0716-3838-5_4openalex-snapshot
Methods for Pangenomic Core Detection
inferred← citeshttps://doi.org/10.1007/978-3-031-45293-2_7openalex-snapshot
Sequence-Based Classification and Identification
inferred← citeshttps://doi.org/10.1007/978-3-031-65257-8_7openalex-snapshot
Sequenzbasierte Klassifikation und Identifikation
inferred← citeshttps://doi.org/10.1007/s00203-022-03079-2openalex-snapshot
Rhodococcus pseudokoreensis sp. nov. isolated from the rhizosphere of young M26 apple rootstocks
inferred← citeshttps://doi.org/10.1007/s00203-026-05004-3openalex-snapshot
Idiomarina solivarensis sp. nov., halophilic bacterium isolated from brine of the former subsurface salt mine in Solivar (Slovakia) showing a unique fatty acids profile
inferred← citeshttps://doi.org/10.1007/s00239-024-10189-6openalex-snapshot
Liquorilactobacillus: A Context of the Evolutionary History and Metabolic Adaptation of a Bacterial Genus from Fermentation Liquid Environments
inferred← citeshttps://doi.org/10.1007/s00253-024-13210-6openalex-snapshot
Comparative genomics reveals insights into the potential of Lysinibacillus irui as a plant growth promoter
inferred← citeshttps://doi.org/10.1007/s00284-023-03380-3openalex-snapshot
Neisseria montereyensis sp. nov., Isolated from Oropharynx of California Sea Lion (Zalophus californianus): Genomic, Phylogenetic, and Phenotypic Study
inferred← citeshttps://doi.org/10.1007/s00284-025-04448-yopenalex-snapshot
Genome‑Based Reclassification of Dactylosporangium matsuzakiense Shomura and Niida 1983 As A Later Heterotypic Synonym of Dactylosporangium vinaceum Shomura et al. 1983 and Proposal of Dactylosporangium vinaceum subsp. vinaceum subsp. nov. and Dactylosporangium vinaceum subsp. matsuzakiense subsp.…
inferred← citeshttps://doi.org/10.1007/s00284-026-05035-5openalex-snapshot
Comparative Genomic Analysis of Pseudomonas shahriarae Reveals Virulence Potential, Antimicrobial Resistance, and Environmental Adaptation
inferred← citeshttps://doi.org/10.1007/s10068-022-01142-8openalex-snapshot
Bioinformatics and its role in the study of the evolution and probiotic potential of lactic acid bacteria
inferred← citeshttps://doi.org/10.1007/s10096-022-04413-8openalex-snapshot
Resolving taxonomic confusion: establishing the genus Phytobacter on the list of clinically relevant Enterobacteriaceae
inferred← citeshttps://doi.org/10.1007/s10126-026-10693-4openalex-snapshot
Cooperative Chemical Biosynthesis of Tetrodotoxin: Evidence from Marine Microbial Contributors
inferred← citeshttps://doi.org/10.1007/s10482-022-01740-wopenalex-snapshot
A dominant clonal lineage of Streptococcus uberis in cattle in Germany
inferred← citeshttps://doi.org/10.1007/s10482-022-01756-2openalex-snapshot
Four new members of the family Cytophagaceae: Chryseosolibacter histidini gen. nov., sp. nov., Chryseosolibacter indicus gen. nov., sp. nov., Dawidia cretensis, gen. nov., sp. nov., and Dawidia soli, gen. nov., sp. nov. isolated from diverse habitat
inferred← citeshttps://doi.org/10.1007/s10482-022-01805-wopenalex-snapshot
Genomic plasticity and adaptive capacity of the quaternary alkyl-ammonium compound and copper tolerant Acinetobacter bohemicus strain QAC-21b isolated from pig manure
inferred← citeshttps://doi.org/10.1007/s11030-022-10584-5openalex-snapshot
Subtractive sequence analysis aided druggable targets mining in Burkholderia cepacia complex and finding inhibitors through bioinformatics approach
inferred← citeshttps://doi.org/10.1007/s11104-026-09140-zopenalex-snapshot
In the nodule or on the nodule? The hidden Frankia biodiversity in Casuarina nodules across continents
inferred← citeshttps://doi.org/10.1007/s12013-024-01407-5openalex-snapshot
Unveiling a Comprehensive Multi-epitope Subunit Vaccine Strategy Against Salmonella subsp. enterica: Bridging Core, Subtractive Proteomics, and Immunoinformatics
inferred← citeshttps://doi.org/10.1007/s12602-025-10810-0openalex-snapshot
Bile Salt Hydrolase Activity in the Food-Derived Strain Levilactobacillus brevis M3R3: Genomic and Functional Characterization
inferred← citeshttps://doi.org/10.1007/s12602-025-10879-7openalex-snapshot
Genomic and Proteolytic Profiling of Lacticaseibacillus sp. PRA205: Insights into PepX-Mediated Bioactive Peptide Metabolism
inferred← citeshttps://doi.org/10.1007/s42161-025-02099-3openalex-snapshot
A distinct Erwinia amylovora lineage in Kazakhstan associated with a pEA29 transposase mutation
inferred← citeshttps://doi.org/10.1007/s42161-026-02257-1openalex-snapshot
The rodZ repeat region of Erwinia amylovora: genetic diversity and possible functional implications
inferred← citeshttps://doi.org/10.1016/b978-0-443-16092-9.00004-7openalex-snapshot
Systematic benchmarking of omics computational tools
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740839openalex-snapshot
Virulence and pangenome analysis of Vibrio harveyi strains from Greek and Red Sea marine aquaculture
inferred← citeshttps://doi.org/10.1016/j.cimid.2022.101835openalex-snapshot
Comparative genomic analysis of Canadian Mycoplasma bovis strains isolated from Bison and Cattle
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.09.043openalex-snapshot
Comprehensive genomic analysis of Bacillus paralicheniformis strain BP9, pan-genomic and genetic basis of biocontrol mechanism
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2024.116556openalex-snapshot
Development of two quantitative PCR assays for the detection of emerging opportunistic human pathogens belonging to the genus Phytobacter in routine diagnostics
inferred← citeshttps://doi.org/10.1016/j.dib.2022.107978openalex-snapshot
Genome sequence data of Bacillus velezensis BP1.2A and BT2.4
inferred← citeshttps://doi.org/10.1016/j.meegid.2022.105398openalex-snapshot
Comparative genome analysis of Streptococcus strains to identify virulent genes causing neonatal meningitis
inferred← citeshttps://doi.org/10.1016/j.resmic.2024.104263openalex-snapshot
Characterization and identification of Pseudomonas sp. AW4, an arsenic-resistant and plant growth-promoting bacteria isolated from the soybean (Glycine max L.) rhizosphere
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.173028openalex-snapshot
Insights into cyanobacterial blooms through the lens of omics
inferred← citeshttps://doi.org/10.1016/j.syapm.2026.126738openalex-snapshot
Genomic insights and antifungal potential of Pseudomonas species isolated from maple sap, including the novel species Pseudomonas acericola sp. nov. and Pseudomonas edsoni sp. nov.
inferred← citeshttps://doi.org/10.1016/j.tig.2022.04.008openalex-snapshot
Earth Biogenome Project: present status and future plans
inferred← citeshttps://doi.org/10.1021/acsinfecdis.6c00521openalex-snapshot
Artificial Intelligence-Integrated Proteome-Wide Target Prioritization for Drug Discovery against Multidrug-Resistant Neisseria gonorrhoeae
inferred← citeshttps://doi.org/10.1038/s41598-024-61782-0openalex-snapshot
Genomic properties of a Bartonella quintana strain from Japanese macaque (Macaca fuscata) revealed by genome comparison with human and rhesus macaque strains
inferred← citeshttps://doi.org/10.1038/s41598-024-84609-4openalex-snapshot
Isolation, identification, and characterisation of the malachite green detoxifying bacterial strain Bacillus pacificus ROC1 and the azoreductase AzrC
inferred← citeshttps://doi.org/10.1038/s41598-025-90258-yopenalex-snapshot
Mutation of the gidB gene causes intrinsic streptomycin resistance in Bacillus velezensis
inferred← citeshttps://doi.org/10.1038/s43586-023-00205-2openalex-snapshot
Peptidomics
inferred← citeshttps://doi.org/10.1039/d6ew00378hopenalex-snapshot
Wastewater detections of Bordetella pertussis and Mycobacterium tuberculosis nucleic acids in active disease outbreak sites in the USA
inferred← citeshttps://doi.org/10.1089/omi.2023.0098openalex-snapshot
Can Genome Sequencing Coupled to Flux Balance Analyses Offer Precision Guidance for Industrial Strain Development? The Lessons from Carbon Trafficking in Corynebacterium glutamicum ATCC 21573
inferred← citeshttps://doi.org/10.1093/bib/bbae229openalex-snapshot
AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods
inferred← citeshttps://doi.org/10.1093/bioinformatics/btae175openalex-snapshot
POCP-nf: an automatic Nextflow pipeline for calculating the percentage of conserved proteins in bacterial taxonomy
inferred← citeshttps://doi.org/10.1093/femsec/fiae042openalex-snapshot
Genome analysis and biogeographic distribution of the earliest divergent Frankia clade in the southern hemisphere
inferred← citeshttps://doi.org/10.1093/nar/gkag948openalex-snapshot
PanGBank: a large-scale resource of precomputed microbial pangenomes built with PPanGGOLiN
inferred← citeshttps://doi.org/10.1094/pdis-04-24-0744-reopenalex-snapshot
Virulence Determinants Are Unevenly Distributed Within Streptomyces Species and Strains Causing Potato Common Scab in the Province of Quebec, Canada
inferred← citeshttps://doi.org/10.1094/pdis-05-23-0933-scopenalex-snapshot
Pan-Genomic Analysis Identifies the Chinese Strain as a New Subspecies of Xanthomonas fragariae
inferred← citeshttps://doi.org/10.1094/phyto-05-23-0149-ropenalex-snapshot
Seasonal Dynamics of Various Scab-Causing Streptomyces Genotypes Among Potato Fields on Prince Edward Island
inferred← citeshttps://doi.org/10.1099/ijsem.0.005224openalex-snapshot
Mycoplasma miroungirhinis sp. nov. and Mycoplasma miroungigenitalium sp. nov., isolated from northern elephant seals (Mirounga angustirostris), Mycoplasma phocoenae sp. nov., isolated from harbour porpoise (Phocoena phocoena), and Mycoplasma phocoeninasale sp. nov., isolated from harbour porpoise…
inferred← citeshttps://doi.org/10.1099/ijsem.0.005927openalex-snapshot
Bombella pluederhausensis sp. nov., Bombella pollinis sp. nov., Bombella saccharophila sp. nov. and Bombella dulcis sp. nov., four Bombella species isolated from the environment of the western honey bee Apis mellifera
inferred← citeshttps://doi.org/10.1099/ijsem.0.006015openalex-snapshot
Streptococcus sciuri sp. nov., Staphylococcus marylandisciuri sp. nov. and Staphylococcus americanisciuri sp. nov., isolated from faeces of eastern grey squirrel (Sciurus carolinensis)
inferred← citeshttps://doi.org/10.1099/ijsem.0.006602openalex-snapshot
Expanding the Stenotrophomonas maltophilia complex: phylogenomic insights, proposal of Stenotrophomonas forensis sp. nov. and reclassification of two Pseudomonas species
inferred← citeshttps://doi.org/10.1099/ijsem.0.007269openalex-snapshot
Actinopolyspora sabaoui sp. nov., a novel halophilic actinobacterium isolated from Ghardaïa soil, Algeria
inferred← citeshttps://doi.org/10.1099/ijsem.0.007316openalex-snapshot
Description of Halodurantibacterium rhizosphaerae sp. nov., a novel bacterium isolated from the rhizosphere, and reclassification of ‘Plastorhodobacter daqingensis’ as Halodurantibacterium daqingense sp. nov.
inferred← citeshttps://doi.org/10.1099/mgen.0.001489openalex-snapshot
Evidence of a novel sublineage of Streptococcus agalactiae in elephants from zoo populations in Germany
inferred← citeshttps://doi.org/10.1101/2023.09.21.558749openalex-snapshot
An Integrated Comparative Genomics, Subtractive Proteomics and Immunoinformatics Framework for the Rational Design of a Pan- Salmonella Multi-Epitope Vaccine
inferred← citeshttps://doi.org/10.1101/2023.09.21.558800openalex-snapshot
MGX 2.0: Shotgun- and assembly-based metagenome and metatranscriptome analysis from a single source
inferred← citeshttps://doi.org/10.1101/2024.07.15.24310426openalex-snapshot
The novel duodenal isolate Streptococcus salivarius AGIRA0003 promotes barrier dysfunction and IgG responses in functional dyspepsia
inferred← citeshttps://doi.org/10.1101/2024.08.29.610417openalex-snapshot
Isolation, identification, and characterisation of the malachite green detoxifying bacterial strain Bacillus pacificus ROC1 and the azoreductase AzrC
inferred← citeshttps://doi.org/10.1101/2025.08.05.668612openalex-snapshot
Ecological ubiquity and phylogeny drive nestedness in phages–bacteria networks and shape the bacterial defensome
inferred← citeshttps://doi.org/10.1101/2025.08.11.669625openalex-snapshot
“ Citrobacter bitternis ” Ko et al., 2015 and “ Kluyvera intestini ” Tetz and Tetz, 2016 are heterotypic synonyms of Phytobacter diazotrophicus Zhang et al., 2017
inferred← citeshttps://doi.org/10.1111/ppa.14020openalex-snapshot
Characterization of a plant‐pathogenic T3SS ‐lacking Xanthomonas strain isolated from common ragweed
inferred← citeshttps://doi.org/10.1128/mra.00786-22openalex-snapshot
Complete Genomic Sequences of Two Aeromonas hydrophila Isolates Derived from Diseased Fish in South Korea
inferred← citeshttps://doi.org/10.1128/mra.00941-24openalex-snapshot
Draft genomes of three Sneathia vaginalis isolates from a patient with bacterial vaginosis
inferred← citeshttps://doi.org/10.1128/mra.01058-22openalex-snapshot
Complete Genome Sequences of Streptococcus parauberis Serotype Ia, Ib/Ic, and II Isolates from Diseased Olive Flounder in South Korea
inferred← citeshttps://doi.org/10.1128/msystems.00473-24openalex-snapshot
zDB: bacterial comparative genomics made easy
inferred← citeshttps://doi.org/10.1128/spectrum.01690-25openalex-snapshot
Genomic and proteomic characterization of a newly isolated Paenarthrobacter ilicis strain and its plasmid-mediated xanthan degradation
inferred← citeshttps://doi.org/10.1128/spectrum.03509-25openalex-snapshot
Single-strain and consortium inoculations with plant-beneficial Pseudomonas spp. promote lettuce growth under field conditions
inferred← citeshttps://doi.org/10.1139/gen-2023-0084openalex-snapshot
Diversity and antigenic potentials of Mycoplasmopsis bovis secreted and outer membrane proteins within a core genome of strains isolated from North American bison and cattle
inferred← citeshttps://doi.org/10.1139/gen-2024-0177openalex-snapshot
Diversity and T-cell antigenic potentials of Mycoplasma mycoides subsp. mycoides vaccine candidates
inferred← citeshttps://doi.org/10.1186/s12864-022-08966-yopenalex-snapshot
Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734
inferred← citeshttps://doi.org/10.1186/s12864-023-09940-yopenalex-snapshot
Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.1186/s12864-024-10900-3openalex-snapshot
Comparative genomic analysis of two putative novel Idiomarina species from hypersaline miocene deposits
inferred← citeshttps://doi.org/10.1186/s12864-025-11952-9openalex-snapshot
Complete mitochondrial genomes of the Prototheca genus: comparative genomics and evolutionary insights
inferred← citeshttps://doi.org/10.1186/s12864-026-12681-3openalex-snapshot
Comparative genomics insights into Pseudomonas rhodesiae: environmental distribution, resistance determinants, virulence factors, and evolutionary implications
inferred← citeshttps://doi.org/10.1186/s12864-026-12716-9openalex-snapshot
Comparative genome analysis of Pseudomonas chlororaphis strains reveals biosynthetic diversity underlying plant growth promotion and soil health improvement
inferred← citeshttps://doi.org/10.1186/s12866-026-04919-7openalex-snapshot
Genophenotypic insights into biocontrol and growth-promoting mechanisms of Bacillus velezensis BV25 against tomato Fusarium wilt
inferred← citeshttps://doi.org/10.1186/s13099-025-00689-1openalex-snapshot
Insights into the utilisation of 1,2-propanediol and interactions with the cell envelope of Clostridium perfringens
inferred← citeshttps://doi.org/10.1186/s40793-023-00479-9openalex-snapshot
Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
inferred← citeshttps://doi.org/10.1186/s42483-024-00283-4openalex-snapshot
Epidemiological description of fire blight introduction patterns to Central Asia and the Caucasus region based on CRISPR spacer typing and genome analysis
inferred← citeshttps://doi.org/10.1186/s42483-025-00346-0openalex-snapshot
Soil-dwelling Bacillus velezensis SS-38.4 efficiently colonizes sugar beet phyllosphere and controls phytopathogenic Pseudomonas syringae
inferred← citeshttps://doi.org/10.1371/journal.pone.0272945openalex-snapshot
Exploration of Streptococcus core genome to reveal druggable targets and novel therapeutics against S. pneumoniae
inferred← citeshttps://doi.org/10.1371/journal.pone.0292413openalex-snapshot
An integrated comparative genomics, subtractive proteomics and immunoinformatics framework for the rational design of a Pan-Salmonella multi-epitope vaccine
inferred← citeshttps://doi.org/10.1371/journal.ppat.1013428openalex-snapshot
Ecological ubiquity and phylogeny drive nestedness in phages–bacteria networks and shape the bacterial defensome
inferred← citeshttps://doi.org/10.18097/bmcrm00226openalex-snapshot
Lamp Primer Designing Software: The Overview
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8701053/v1openalex-snapshot
What lurks beneath the surface? The hidden Frankia biodiversity in Casuarina nodules across continents
inferred← citeshttps://doi.org/10.21256/zhaw-35010openalex-snapshot
"Citrobacter bitternis" Ko et al., 2015 and "Kluyvera intestini" Tetz and Tetz, 2016 are heterotypic synonyms of Phytobacter diazotrophicus Zhang et al., 2017
inferred← citeshttps://doi.org/10.2174/0118756921369289250514051055openalex-snapshot
Computational Study for the Identification of Novel Therapeutic Targets in Haemophilus influenzae by Subtractive Genomics Approach
inferred← citeshttps://doi.org/10.2478/am-2024-0003openalex-snapshot
Fungal Pathogen in Digital Age: Review on Current State and Trend of Comparative Genomics Studies of Pathogenic Fungi
inferred← citeshttps://doi.org/10.32417/1997-4868-2024-24-04-451-459openalex-snapshot
Biocontrol of common scab in potato cultivation
inferred← citeshttps://doi.org/10.3389/fagro.2022.898778openalex-snapshot
Differentiation of the Xanthomonas hortorum – Xanthomonas hydrangeae Species Complex Using Sensitive and Selective LAMP Assays
inferred← citeshttps://doi.org/10.3389/fcimb.2022.1043726openalex-snapshot
Comparative genomic and phenotypic analyses of the virulence potential in Shiga toxin-producing Escherichia coli O121:H7 and O121:H10
inferred← citeshttps://doi.org/10.3389/fcimb.2026.1781831openalex-snapshot
Proton pump inhibitor exposure modulates functional and transcriptional responses in Lactobacillus acidophilus: a comprehensive computational and experimental insights
inferred← citeshttps://doi.org/10.3389/fmicb.2021.716522openalex-snapshot
Comparative Genomics of Potato Common Scab-Causing Streptomyces spp. Displaying Varying Virulence
inferred← citeshttps://doi.org/10.3389/fmicb.2021.769380openalex-snapshot
Prediction and Analysis in silico of Genomic Islands in Aeromonas hydrophila
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1007143openalex-snapshot
Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1032515openalex-snapshot
The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1038888openalex-snapshot
Harnessing the genomic diversity of Pseudomonas strains against lettuce bacterial pathogens
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1272734openalex-snapshot
Identification of staphyloxanthin and derivates in yellow-pigmented Staphylococcus capitis subsp. capitis
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1289182openalex-snapshot
Description of Mycobacterium pinniadriaticum sp. nov., isolated from a noble pen shell (Pinna nobilis) population in Croatia
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1307349openalex-snapshot
Soft rot pathogen Dickeya dadantii 3937 produces tailocins resembling the tails of Peduovirus P2
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1304682openalex-snapshot
Identification and genomic characterization of Pseudomonas spp. displaying biocontrol activity against Sclerotinia sclerotiorum in lettuce
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1484423openalex-snapshot
Subtractive genomics and comparative metabolic pathways profiling revealed novel drug targets in Ureaplasma urealyticum
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1582121openalex-snapshot
Molecular characterization, comparative genome analysis and resistance determinants of three clinical Elizabethkingia miricola strains isolated from Michigan
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1676706openalex-snapshot
Genotypes and associated traits in Salmonella enterica Newport strains linked to fresh produce-associated outbreaks in the United States
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1750102openalex-snapshot
Biodiversity of the antimicrobial potential of Weissella paramesenteroides strains isolated from dairy cattle
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1751566openalex-snapshot
Comparative genomics of crucian carp-isolated Flavobacterium psychrophilum: toward the foundations of overwintering mortality syndrome
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1849378openalex-snapshot
Bacterial resistance across habitats: from German schools to the International Space Station
inferred← citeshttps://doi.org/10.3389/fpls.2022.894985openalex-snapshot
Agronomic efficiency and genome mining analysis of the wheat-biostimulant rhizospheric bacterium Pseudomonas pergaminensis sp. nov. strain 1008T
inferred← citeshttps://doi.org/10.3389/fpls.2023.1145041openalex-snapshot
Wide-genome selection of lactic acid bacteria harboring genes that promote the elimination of antinutritional factors
inferred← citeshttps://doi.org/10.3389/fpls.2023.1194887openalex-snapshot
Two plant-associated Bacillus velezensis strains selected after genome analysis, metabolite profiling, and with proved biocontrol potential, were enhancing harvest yield of coffee and black pepper in large field trials
inferred← citeshttps://doi.org/10.3389/fpls.2023.1197706openalex-snapshot
Race-specific genotypes of Pseudomonas syringae pv. tomato are defined by the presence of mobile DNA elements within the genome
inferred← citeshttps://doi.org/10.3389/fpls.2024.1352318openalex-snapshot
Comparative genomics, pangenomics, and phenomic studies of Pectobacterium betavasculorum strains isolated from sugar beet, potato, sunflower, and artichoke: insights into pathogenicity, virulence determinants, and adaptation to the host plant
inferred← citeshttps://doi.org/10.3390/antibiotics12010024openalex-snapshot
Comparative Genome Analysis of 19 Trueperella pyogenes Strains Originating from Different Animal Species Reveal a Genetically Diverse Open Pan-Genome
inferred← citeshttps://doi.org/10.3390/antibiotics12050943openalex-snapshot
Genome-Based Retrospective Analysis of a Providencia stuartii Outbreak in Rome, Italy: Broad Spectrum IncC Plasmids Spread the NDM Carbapenemase within the Hospital
inferred← citeshttps://doi.org/10.3390/foods14061060openalex-snapshot
Application of Comparative Genomics for the Development of PCR Primers for the Detection of Harmful or Beneficial Microorganisms in Food: Mini-Review
inferred← citeshttps://doi.org/10.3390/jof7100832openalex-snapshot
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
inferred← citeshttps://doi.org/10.3390/jof8050524openalex-snapshot
Ustilago maydis Metabolic Characterization and Growth Quantification with a Genome-Scale Metabolic Model
inferred← citeshttps://doi.org/10.3390/jof8080862openalex-snapshot
Genome Assembly and Genetic Traits of the Pleuromutilin-Producer Clitopilus passeckerianus DSM1602
inferred← citeshttps://doi.org/10.3390/md19110621openalex-snapshot
Complete Genome Sequence of Two Deep-Sea Streptomyces Isolates from Madeira Archipelago and Evaluation of Their Biosynthetic Potential
inferred← citeshttps://doi.org/10.3390/microorganisms10040724openalex-snapshot
Metabolism of the Genus Guyparkeria Revealed by Pangenome Analysis
inferred← citeshttps://doi.org/10.3390/microorganisms10122508openalex-snapshot
Genome-Based Analysis of Virulence Factors and Biofilm Formation in Novel P. aeruginosa Strains Isolated from Household Appliances
inferred← citeshttps://doi.org/10.3390/microorganisms11010168openalex-snapshot
Novel Plant-Associated Brevibacillus and Lysinibacillus Genomospecies Harbor a Rich Biosynthetic Potential of Antimicrobial Compounds
inferred← citeshttps://doi.org/10.3390/microorganisms11061457openalex-snapshot
Escherichia coli Strains Display Varying Susceptibility to Grazing by the Soil Amoeba Dictyostelium discoideum
inferred← citeshttps://doi.org/10.3390/microorganisms11102546openalex-snapshot
Characterization and Pathogenicity of Flavobacterium psychrophilum Isolated from Rainbow Trout (Oncorhynchus mykiss) in Korea
inferred← citeshttps://doi.org/10.3390/microorganisms11112677openalex-snapshot
Plant-Associated Representatives of the Bacillus cereus Group Are a Rich Source of Antimicrobial Compounds
inferred← citeshttps://doi.org/10.3390/microorganisms12061079openalex-snapshot
Elizabethkingia anophelis MSU001 Isolated from Anopheles stephensi: Molecular Characterization and Comparative Genome Analysis
inferred← citeshttps://doi.org/10.3390/microorganisms12061241openalex-snapshot
Sigma Factor Engineering in Actinoplanes sp. SE50/110: Expression of the Alternative Sigma Factor Gene ACSP50_0507 (σHAs) Enhances Acarbose Yield and Alters Cell Morphology
inferred← citeshttps://doi.org/10.3390/microorganisms13102244openalex-snapshot
Comparative Analyses of Pediococcus pentosaceus Strains Isolated from Milk Cattle Reveal New Insights for Screening Food-Protective Cultures
inferred← citeshttps://doi.org/10.4014/jmb.2306.06017openalex-snapshot
Comparative Genome analysis of the Genus Curvibacter and the Description of Curvibacter microcysteis sp. nov. and Curvibacter cyanobacteriorum sp. nov., Isolated from Fresh Water during the Cyanobacterial Bloom Period
inferred← citeshttps://doi.org/10.47853/fas.2023.e48openalex-snapshot
Analysis of whole genome sequencing and virulence factors of Vibrio vulnificus 1908-10 isolated from sea water at Gadeok island coast
inferred← citeshttps://doi.org/10.55003/cast.2022.03.23.005openalex-snapshot
Biocontrol Potential, Genome and Nonribosomal Peptide Synthetase Gene Expression of Bacillus velezensis 2211
inferred← citeshttps://doi.org/10.6084/m9.figshare.25010413openalex-snapshot
Additional file 1 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.25010538openalex-snapshot
Additional file 2 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26579330openalex-snapshot
Additional file 1 of Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26579333openalex-snapshot
Additional file 2 of Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26579336openalex-snapshot
Additional file 3 of Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668119openalex-snapshot
Additional file 3 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668122openalex-snapshot
Additional file 4 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668125openalex-snapshot
Additional file 5 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668128openalex-snapshot
Additional file 6 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668131openalex-snapshot
Additional file 7 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668134openalex-snapshot
Additional file 8 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.6084/m9.figshare.26668137openalex-snapshot
Additional file 9 of Genome-scale metabolic network model and phenome of solvent-tolerant Pseudomonas putida S12
inferred← citeshttps://doi.org/10.7717/peerj.20259openalex-snapshot
Fast and robust estimate of bacterial genus novelty using the percentage of conserved proteins with unique matches (POCPu)
inferred← citeshttps://doi.org/10.9787/pbb.2021.9.4.287openalex-snapshot
Development of Molecular Markers for Specific Detection of Xanthomonas campestris pv. incanae
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.