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Efficient and specific knockdown of small non-coding RNAs in mammalian cells and in mice

https://doi.org/10.1093/nar/gkq1121
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/path.2638openalex-snapshot
Non‐coding RNAs: regulators of disease
inferredcites →https://doi.org/10.1007/s00412-005-0333-9openalex-snapshot
The many facets of H/ACA ribonucleoproteins
inferredcites →https://doi.org/10.1016/0300-9084(96)88100-4openalex-snapshot
Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA
inferredcites →https://doi.org/10.1016/j.gene.2005.06.019openalex-snapshot
Non-coding RNAs: New players in eukaryotic biology
inferredcites →https://doi.org/10.1016/j.ijpara.2003.10.014openalex-snapshot
Small nucleolar RNAs that guide modification in trypanosomatids: repertoire, targets, genome organisation, and unique functions
inferredcites →https://doi.org/10.1016/j.molcel.2007.10.012openalex-snapshot
rRNA Modifications in an Intersubunit Bridge of the Ribosome Strongly Affect Both Ribosome Biogenesis and Activity
inferredcites →https://doi.org/10.1016/j.molcel.2008.10.017openalex-snapshot
A Human snoRNA with MicroRNA-Like Functions
inferredcites →https://doi.org/10.1016/j.ygeno.2009.05.002openalex-snapshot
Eukaryotic snoRNAs: A paradigm for gene expression flexibility
inferredcites →https://doi.org/10.1016/s0092-8674(00)80263-9openalex-snapshot
Site-Specific Pseudouridine Formation in Preribosomal RNA Is Guided by Small Nucleolar RNAs
inferredcites →https://doi.org/10.1016/s0092-8674(00)81308-2openalex-snapshot
Site-Specific Ribose Methylation of Preribosomal RNA: A Novel Function for Small Nucleolar RNAs
inferredcites →https://doi.org/10.1016/s0092-8674(02)00718-3openalex-snapshot
Small Nucleolar RNAs
inferredcites →https://doi.org/10.1016/s0300-9084(02)01402-5openalex-snapshot
The expanding snoRNA world
inferredcites →https://doi.org/10.1016/s0955-0674(02)00334-4openalex-snapshot
Biogenesis of small nucleolar ribonucleoproteins
inferredcites →https://doi.org/10.1016/s1097-2765(03)00040-6openalex-snapshot
Ribosome Structure and Activity Are Altered in Cells Lacking snoRNPs that Form Pseudouridines in the Peptidyl Transferase Center
inferredcites →https://doi.org/10.1016/s1360-1385(02)00007-9openalex-snapshot
Plant snoRNAs: functional evolution and new modes of gene expression
inferredcites →https://doi.org/10.1016/s1673-8527(08)60134-4openalex-snapshot
Implication of snoRNA U50 in human breast cancer
inferredcites →https://doi.org/10.1017/s1355838202022094openalex-snapshot
Naf1p is a box H/ACA snoRNP assembly factor
inferredcites →https://doi.org/10.1021/bi00088a030openalex-snapshot
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
inferredcites →https://doi.org/10.1038/nrg2683openalex-snapshot
The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs
inferredcites →https://doi.org/10.1038/sj.embor.7400715openalex-snapshot
Integrating snoRNP assembly with mRNA biogenesis
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03483.xopenalex-snapshot
RNA‐modifying machines in archaea
inferredcites →https://doi.org/10.1073/pnas.1332001100openalex-snapshot
Small nucleolar RNA interference induced by antisense or double-stranded RNA in trypanosomatids
inferredcites →https://doi.org/10.1073/pnas.93.25.14480openalex-snapshot
A small nucleolar RNA requirement for site-specific ribose methylation of rRNA in Xenopus
inferredcites →https://doi.org/10.1074/jbc.m207669200openalex-snapshot
The Shq1p·Naf1p Complex Is Required for Box H/ACA Small Nucleolar Ribonucleoprotein Particle Biogenesis
inferredcites →https://doi.org/10.1083/jcb.200411129openalex-snapshot
ADAR2-mediated editing of RNA substrates in the nucleolus is inhibited by C/D small nucleolar RNAs
inferredcites →https://doi.org/10.1093/emboj/21.11.2746openalex-snapshot
Cajal body‐specific small nuclear RNAs: a novel class of 2′‐O‐methylation and pseudouridylation guide RNAs
inferredcites →https://doi.org/10.1093/hmg/ddl046openalex-snapshot
Non-coding RNA
inferredcites →https://doi.org/10.1093/hmg/ddp585openalex-snapshot
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
inferredcites →https://doi.org/10.1093/nar/30.4.912openalex-snapshot
Analysis of the structure of human telomerase RNA in vivo
inferredcites →https://doi.org/10.1093/nar/gkj002openalex-snapshot
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
inferredcites →https://doi.org/10.1093/nar/gkp735openalex-snapshot
Off-target and a portion of target-specific siRNA mediated mRNA degradation is Ago2 ‘Slicer’ independent and can be mediated by Ago1
inferredcites →https://doi.org/10.1093/nar/gkq599openalex-snapshot
Small nucleolar RNA interference in Trypanosoma brucei: mechanism and utilization for elucidating the function of snoRNAs
inferredcites →https://doi.org/10.1101/sqb.2006.71.025openalex-snapshot
Biogenesis and Intranuclear Trafficking of Human Box C/D and H/ACA RNPs
inferredcites →https://doi.org/10.1111/j.1399-0004.2007.00923.xopenalex-snapshot
Dyskeratosis congenita: a genetic disorder of many faces
inferredcites →https://doi.org/10.1126/science.1112014openalex-snapshot
The Transcriptional Landscape of the Mammalian Genome
inferredcites →https://doi.org/10.1126/science.1118265openalex-snapshot
The snoRNA HBII-52 Regulates Alternative Splicing of the Serotonin Receptor 2C
inferredcites →https://doi.org/10.1126/science.283.5405.1168openalex-snapshot
A Computational Screen for Methylation Guide snoRNAs in Yeast
inferredcites →https://doi.org/10.1128/mcb.01097-07openalex-snapshot
A Dynamic Scaffold of Pre-snoRNP Factors Facilitates Human Box C/D snoRNP Assembly
inferredcites →https://doi.org/10.1128/mcb.18.12.6897openalex-snapshot
Classification of gas5 as a Multi-Small-Nucleolar-RNA (snoRNA) Host Gene and a Member of the 5′-Terminal Oligopyrimidine Gene Family Reveals Common Features of snoRNA Host Genes
inferredcites →https://doi.org/10.1128/mcb.19.6.3989openalex-snapshot
Both Transcriptional and Posttranscriptional Mechanisms Regulate Human Telomerase Template RNA Levels
inferredcites →https://doi.org/10.1128/mcb.22.20.7053-7065.2002openalex-snapshot
Naf1p, an Essential Nucleoplasmic Factor Specifically Required for Accumulation of Box H/ACA Small Nucleolar RNPs
inferredcites →https://doi.org/10.1128/mcb.24.13.5797-5807.2004openalex-snapshot
Human Box H/ACA Pseudouridylation Guide RNA Machinery
inferredcites →https://doi.org/10.1128/mcb.25.8.3295-3304.2005openalex-snapshot
Cotranscriptional Recruitment of the Pseudouridylsynthetase Cbf5p and of the RNA Binding Protein Naf1p during H/ACA snoRNP Assembly
inferredcites →https://doi.org/10.1128/mcb.26.7.2540-2549.2006openalex-snapshot
Cotranscriptional Recognition of Human Intronic Box H/ACA snoRNAs Occurs in a Splicing-Independent Manner
inferredcites →https://doi.org/10.1201/9781420002546openalex-snapshot
Antisense Drug Technology
inferredcites →https://doi.org/10.1261/rna.1657609openalex-snapshot
Efficient oligonucleotide-mediated degradation of nuclear noncoding RNAs in mammalian cultured cells
inferredcites →https://doi.org/10.1261/rna.1724409openalex-snapshot
Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
inferredcites →https://doi.org/10.1261/rna.1740009openalex-snapshot
Methodological obstacles in knocking down small noncoding RNAs
inferredcites →https://doi.org/10.1261/rna.7174805openalex-snapshot
A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification
inferredcites →https://doi.org/10.1371/journal.ppat.1000224openalex-snapshot
snoRNA, a Novel Precursor of microRNA in Giardia lamblia
inferredcites →https://doi.org/10.1385/jmn:28:2:103openalex-snapshot
Brain-Specific Small Nucleolar RNAs

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/mco2.70257openalex-snapshot
Small Nucleolar RNAs: Biological Functions and Diseases
inferred← citeshttps://doi.org/10.1007/978-1-0716-1386-3_4openalex-snapshot
Non-Coding RNA Silencing in Mammalian Cells by Antisense LNA GapmeRs Transfection
inferred← citeshttps://doi.org/10.1007/978-1-4939-1221-6_9openalex-snapshot
Antisense Oligonucleotide-Based Therapies for Diseases Caused by pre-mRNA Processing Defects
inferred← citeshttps://doi.org/10.1007/978-1-4939-1369-5_13openalex-snapshot
Rapid and Efficient Elimination of Specific Nuclear Noncoding RNAs in Mammalian Cells with Antisense Oligonucleotides
inferred← citeshttps://doi.org/10.1007/978-3-642-27426-8_8openalex-snapshot
Antisense-Mediated Reduction of Eukaryotic Noncoding RNAs
inferred← citeshttps://doi.org/10.1007/s00018-011-0762-yopenalex-snapshot
Biology and applications of small nucleolar RNAs
inferred← citeshttps://doi.org/10.1007/s10557-011-6290-zopenalex-snapshot
An Introduction to Small Non-coding RNAs: miRNA and snoRNA
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Ribosomal RNA Methylation and Cancer
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The epitranscriptome in ageing and stress resistance: A systematic review
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inferred← citeshttps://doi.org/10.1016/j.bbcan.2020.188501openalex-snapshot
Small nucleolar RNA and its potential role in breast cancer – A comprehensive review
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Aurora Kinase B Regulates Telomerase Activity via a Centromeric RNA in Stem Cells
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Small nucleolar RNAs: Emerging therapeutic and diagnostic frontiers in Alzheimer’s disease
inferred← citeshttps://doi.org/10.1016/j.jbc.2021.100416openalex-snapshot
Antisense technology: A review
inferred← citeshttps://doi.org/10.1016/j.matdes.2025.115098openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molcel.2019.12.029openalex-snapshot
Directed RNase H Cleavage of Nascent Transcripts Causes Transcription Termination
inferred← citeshttps://doi.org/10.1016/j.nlm.2026.108208openalex-snapshot
Orphan C/D box snoRNAs are associated with fear-related memory processes in mice
inferred← citeshttps://doi.org/10.1016/j.semcancer.2020.09.003openalex-snapshot
Emerging roles and potential clinical applications of noncoding RNAs in hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1016/j.tig.2025.05.007openalex-snapshot
Architectural RNAs: blueprints for functional membraneless organelle assembly
inferred← citeshttps://doi.org/10.1016/j.xgen.2025.100927openalex-snapshot
Coordinated regulation by lncRNAs results in tight lncRNA-target couplings
inferred← citeshttps://doi.org/10.1016/j.ymthe.2017.06.002openalex-snapshot
RNase H1-Dependent Antisense Oligonucleotides Are Robustly Active in Directing RNA Cleavage in Both the Cytoplasm and the Nucleus
inferred← citeshttps://doi.org/10.1021/acs.jcim.6c01314openalex-snapshot
ASO-RASAR: A Read-Across Framework for Predicting Antisense Oligonucleotide Gapmer Activity Across Target Genes
inferred← citeshttps://doi.org/10.1021/jacs.0c01808openalex-snapshot
Interaction of ASOs with PC4 Is Highly Influenced by the Cellular Environment and ASO Chemistry
inferred← citeshttps://doi.org/10.1038/nbt.3589openalex-snapshot
Translation efficiency of mRNAs is increased by antisense oligonucleotides targeting upstream open reading frames
inferred← citeshttps://doi.org/10.1038/s41467-021-25457-yopenalex-snapshot
Loss of SNORA73 reprograms cellular metabolism and protects against steatohepatitis
inferred← citeshttps://doi.org/10.1038/s41467-026-78516-7openalex-snapshot
Antisense oligonucleotides targeting transcription termination windows disrupt mRNA 3’ end processing and decrease gene expression
inferred← citeshttps://doi.org/10.1038/s41565-021-00898-0openalex-snapshot
The current landscape of nucleic acid therapeutics
inferred← citeshttps://doi.org/10.1038/s41598-018-23293-7openalex-snapshot
Neuronal differentiation induces SNORD115 expression and is accompanied by post-transcriptional changes of serotonin receptor 2c mRNA
inferred← citeshttps://doi.org/10.1053/j.gastro.2017.03.050openalex-snapshot
Small Nucleolar Noncoding RNA SNORA23, Up-Regulated in Human Pancreatic Ductal Adenocarcinoma, Regulates Expression of Spectrin Repeat-Containing Nuclear Envelope 2 to Promote Growth and Metastasis of Xenograft Tumors in Mice
inferred← citeshttps://doi.org/10.1080/15476286.2017.1416278openalex-snapshot
snoRNAs associate with mRNA 3′ processing complex: New wine in old bottles
inferred← citeshttps://doi.org/10.1080/15476286.2019.1585738openalex-snapshot
The origin of exosomal miR-1246 in human cancer cells
inferred← citeshttps://doi.org/10.1080/15476286.2025.2506712openalex-snapshot
Computational limitations and future needs to unravel the full potential of 2’-O-methylation and C/D box snoRNAs
inferred← citeshttps://doi.org/10.1089/nat.2020.0864openalex-snapshot
Gapmer Antisense Oligonucleotides Targeting 5S Ribosomal RNA Can Reduce Mature 5S Ribosomal RNA by Two Mechanisms
inferred← citeshttps://doi.org/10.1093/molbev/msab348openalex-snapshot
Phylogenetic and Molecular Analyses Identify SNORD116 Targets Involved in the Prader–Willi Syndrome
inferred← citeshttps://doi.org/10.1093/nar/gkaa715openalex-snapshot
Some ASOs that bind in the coding region of mRNAs and induce RNase H1 cleavage can cause increases in the pre-mRNAs that may blunt total activity
inferred← citeshttps://doi.org/10.1093/nar/gkab1198openalex-snapshot
Perinuclear positioning of endosomes can affect PS-ASO activities
inferred← citeshttps://doi.org/10.1093/nar/gkaf1147openalex-snapshot
Development of programmable RNA imaging with RNA-guided GFP via click chemistry
inferred← citeshttps://doi.org/10.1093/nar/gks239openalex-snapshot
siRNAs targeted to certain polyadenylation sites promote specific, RISC-independent degradation of messenger RNAs
inferred← citeshttps://doi.org/10.1093/nar/gkt316openalex-snapshot
Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation
inferred← citeshttps://doi.org/10.1093/nar/gku484openalex-snapshot
TCP1 complex proteins interact with phosphorothioate oligonucleotides and can co-localize in oligonucleotide-induced nuclear bodies in mammalian cells
inferred← citeshttps://doi.org/10.1093/nar/gkv1206openalex-snapshot
Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides
inferred← citeshttps://doi.org/10.1093/nar/gkv143openalex-snapshot
Identification and characterization of intracellular proteins that bind oligonucleotides with phosphorothioate linkages
inferred← citeshttps://doi.org/10.1093/nar/gkv920openalex-snapshot
The rates of the major steps in the molecular mechanism of RNase H1-dependent antisense oligonucleotide induced degradation of RNA
inferred← citeshttps://doi.org/10.1093/nar/gkw065openalex-snapshot
RNA cleavage products generated by antisense oligonucleotides and siRNAs are processed by the RNA surveillance machinery
inferred← citeshttps://doi.org/10.1093/nar/gkx1174openalex-snapshot
Translation can affect the antisense activity of RNase H1-dependent oligonucleotides targeting mRNAs
inferred← citeshttps://doi.org/10.1093/nar/gkx632openalex-snapshot
Antisense oligonucleotides targeting translation inhibitory elements in 5′ UTRs can selectively increase protein levels
inferred← citeshttps://doi.org/10.1093/nar/gkx651openalex-snapshot
A snoRNA modulates mRNA 3′ end processing and regulates the expression of a subset of mRNAs
inferred← citeshttps://doi.org/10.1093/nar/gkx710openalex-snapshot
Dynamic nucleoplasmic and nucleolar localization of mammalian RNase H1 in response to RNAP I transcriptional R-loops
inferred← citeshttps://doi.org/10.1093/nar/gky841openalex-snapshot
COPII vesicles can affect the activity of antisense oligonucleotides by facilitating the release of oligonucleotides from endocytic pathways
inferred← citeshttps://doi.org/10.1093/nar/gkz1140openalex-snapshot
Functional diversity of small nucleolar RNAs
inferred← citeshttps://doi.org/10.1093/nar/gkz500openalex-snapshot
mRNA levels can be reduced by antisense oligonucleotides via no-go decay pathway
inferred← citeshttps://doi.org/10.1101/2021.12.23.474040openalex-snapshot
WITHDRAWN: The cardiac lncRNA Chantico directly regulates Cxcl1 chemokine transcription
inferred← citeshttps://doi.org/10.1101/2022.05.09.491263openalex-snapshot
Orphan C/D box snoRNAs modulate fear-related memory processes in mice
inferred← citeshttps://doi.org/10.1101/2024.01.08.574564openalex-snapshot
Self-balanced regulation by the long non-coding RNA Lockd on the cell cycle progression of cortical neural progenitor cells through counteracting cis and trans roles
inferred← citeshttps://doi.org/10.1101/gad.217018.113openalex-snapshot
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis
inferred← citeshttps://doi.org/10.1101/gad.266486.115openalex-snapshot
The Y3** ncRNA promotes the 3′ end processing of histone mRNAs
inferred← citeshttps://doi.org/10.1101/gr.246678.118openalex-snapshot
RNA components of the spliceosome regulate tissue- and cancer-specific alternative splicing
inferred← citeshttps://doi.org/10.1126/scitranslmed.abf4077openalex-snapshot
An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the UBE3A-AS transcript
inferred← citeshttps://doi.org/10.1186/s12867-019-0128-9openalex-snapshot
Small nucleolar RNA Sf-15 regulates proliferation and apoptosis of Spodoptera frugiperda Sf9 cells
inferred← citeshttps://doi.org/10.1186/s12943-022-01494-zopenalex-snapshot
A nuclear function for an oncogenic microRNA as a modulator of snRNA and splicing
inferred← citeshttps://doi.org/10.1186/s13059-023-03110-9openalex-snapshot
Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.1242/jcs.261930openalex-snapshot
2′-O-ribose methylation levels of ribosomal RNA distinguish different types of growth arrest in human dermal fibroblasts
inferred← citeshttps://doi.org/10.1371/journal.pone.0071006openalex-snapshot
Human RNase H1 Is Associated with Protein P32 and Is Involved in Mitochondrial Pre-rRNA Processing
inferred← citeshttps://doi.org/10.1371/journal.pone.0110615openalex-snapshot
Targeting of Repeated Sequences Unique to a Gene Results in Significant Increases in Antisense Oligonucleotide Potency
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8079210/v1openalex-snapshot
H/ACA snoRNAs and snoRNPs Dysregulation Links rRNA Modification to Glioblastoma Progression
inferred← citeshttps://doi.org/10.3390/biom8040106openalex-snapshot
2′-O-Methylation of Ribosomal RNA: Towards an Epitranscriptomic Control of Translation?
inferred← citeshttps://doi.org/10.3390/cancers15010242openalex-snapshot
MiRNAs and snoRNAs in Bone Metastasis: Functional Roles and Clinical Potential
inferred← citeshttps://doi.org/10.3390/ijms27125612openalex-snapshot
The Versatile Applications of Antisense Oligonucleotides in Modern Medicine
inferred← citeshttps://doi.org/10.3390/molecules29194737openalex-snapshot
Recent Advances and Prospects of Nucleic Acid Therapeutics for Anti-Cancer Therapy
inferred← citeshttps://doi.org/10.3390/ncrna7040068openalex-snapshot
Small but Mighty—The Emerging Role of snoRNAs in Hematological Malignancies
inferred← citeshttps://doi.org/10.3410/f.725944126.793554176openalex-snapshot
Faculty Opinions recommendation of Cellular localization of long non-coding RNAs affects silencing by RNAi more than by antisense oligonucleotides.
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649720openalex-snapshot
Additional file 1 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649723openalex-snapshot
Additional file 2 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649726openalex-snapshot
Additional file 3 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649729openalex-snapshot
Additional file 4 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649732openalex-snapshot
Additional file 5 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649741openalex-snapshot
Additional file 6 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.6084/m9.figshare.26649744openalex-snapshot
Additional file 7 of Dengue and Zika RNA-RNA interactomes reveal pro- and anti-viral RNA in human cells
inferred← citeshttps://doi.org/10.64898/2026.04.02.716167openalex-snapshot
snoFlake: A network model for snoRNA–RBP complexes reveals SNORD22 as a U5 snRNP-associated splicing regulator
inferred← citeshttps://doi.org/10.70675/7f72328bzc4fcz42d3z9036z2a09526a9061openalex-snapshot
Ribosome biogenesis as a novel therapeutic target in breast cancer
inferred← citeshttps://doi.org/10.7554/elife.106846openalex-snapshot
EPB41L4A-AS1 long noncoding RNA acts in both cis- and trans-acting transcriptional regulation and controls nucleolar biology
inferred← citeshttps://doi.org/10.7554/elife.106846.1openalex-snapshot
EPB41L4A-AS1 long noncoding RNA acts in both cis- and trans-acting transcriptional regulation and controls nucleolar biology
inferred← citeshttps://doi.org/10.7554/elife.106846.2openalex-snapshot
EPB41L4A-AS1 long noncoding RNA acts in both cis- and trans-acting transcriptional regulation and controls nucleolar biology
inferred← citeshttps://doi.org/10.7554/elife.106846.3openalex-snapshot
EPB41L4A-AS1 long noncoding RNA acts in both cis- and trans-acting transcriptional regulation and controls nucleolar biology
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