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dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/wsbm.44openalex-snapshot
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
inferredcites →https://doi.org/10.1006/jmbi.2001.5080openalex-snapshot
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
inferredcites →https://doi.org/10.1016/j.ajhg.2008.09.017openalex-snapshot
The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease
inferredcites →https://doi.org/10.1038/4651000aopenalex-snapshot
Human genome at ten: Science after the sequence
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature06781openalex-snapshot
SATB1 reprogrammes gene expression to promote breast tumour growth and metastasis
inferredcites →https://doi.org/10.1038/nbt1346openalex-snapshot
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
inferredcites →https://doi.org/10.1038/nrg2483openalex-snapshot
Genotype–phenotype databases: challenges and solutions for the post-genomic era
inferredcites →https://doi.org/10.1093/bib/bbl004openalex-snapshot
Automated protein function prediction--the genomic challenge
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/gkh119openalex-snapshot
IntEnz, the integrated relational enzyme database
inferredcites →https://doi.org/10.1093/nar/gki070openalex-snapshot
The Universal Protein Resource (UniProt)
inferredcites →https://doi.org/10.1093/nar/gkj068openalex-snapshot
FlyBase: anatomical data, images and queries
inferredcites →https://doi.org/10.1093/nar/gkl910openalex-snapshot
The SUPERFAMILY database in 2007: families and functions
inferredcites →https://doi.org/10.1093/nar/gkm993openalex-snapshot
Data growth and its impact on the SCOP database: new developments
inferredcites →https://doi.org/10.1093/nar/gkn762openalex-snapshot
SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny
inferredcites →https://doi.org/10.1093/nar/gkn803openalex-snapshot
The GOA database in 2009--an integrated Gene Ontology Annotation resource
inferredcites →https://doi.org/10.1093/nar/gkp917openalex-snapshot
Saccharomyces Genome Database provides mutant phenotype data
inferredcites →https://doi.org/10.1093/nar/gkp953openalex-snapshot
Xenbase: gene expression and improved integration
inferredcites →https://doi.org/10.1093/nar/gkq1077openalex-snapshot
ZFIN: enhancements and updates to the zebrafish model organism database
inferredcites →https://doi.org/10.1093/nar/gkq1126openalex-snapshot
DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
inferredcites →https://doi.org/10.1093/nar/gkq1130openalex-snapshot
SUPERFAMILY 1.75 including a domain-centric gene ontology method
inferredcites →https://doi.org/10.1093/nar/gkr1023openalex-snapshot
UniPathway: a resource for the exploration and annotation of metabolic pathways
inferredcites →https://doi.org/10.1093/nar/gkr1065openalex-snapshot
The Pfam protein families database
inferredcites →https://doi.org/10.1093/nar/gkr538openalex-snapshot
PhenomeNET: a whole-phenome approach to disease gene discovery
inferredcites →https://doi.org/10.1093/nar/gkr972openalex-snapshot
Disease Ontology: a backbone for disease semantic integration
inferredcites →https://doi.org/10.1093/nar/gkr981openalex-snapshot
Reorganizing the protein space at the Universal Protein Resource (UniProt)
inferredcites →https://doi.org/10.1093/nar/gks060openalex-snapshot
A transposase strategy for creating libraries of circularly permuted proteins
inferredcites →https://doi.org/10.1104/pp.106.092825openalex-snapshot
The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant
inferredcites →https://doi.org/10.1186/1471-2105-11-498openalex-snapshot
Automatic, context-specific generation of Gene Ontology slims
inferredcites →https://doi.org/10.1186/1471-2105-12-32openalex-snapshot
Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community
inferredcites →https://doi.org/10.1186/gb-2010-11-1-r2openalex-snapshot
Integrating phenotype ontologies across multiple species
inferredcites →https://doi.org/10.1371/journal.pbio.1000247openalex-snapshot
Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Alternative Splicing Changes As Drivers Of Cancer
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Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges
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Representation of the Protein Universe using Classifications, Maps, and Networks
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Characterization of mitochondrial proteomes of nonbilaterian animals
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The Genome3D Consortium for Structural Annotations of Selected Model Organisms
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Computational Methods for Annotation Transfers from Sequence
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Associating Gene Ontology Terms with Pfam Protein Domains
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Current Progress in Gene and Genome Annotation
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Evolution of the Metazoan Protein Domain Repertoire Revealed by a Birth-Death-Gain Model
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The Disease Ontology: fostering interoperability between biological and clinical human disease-related data
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Proteomics analysis of global regulatory cascades involved in clavulanic acid production and morphological development inStreptomyces clavuligerus
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Comparative and bioinformatics analyses of pathogenic bacterial secretomes identified by mass spectrometry in Burkholderia species
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The importance of using realistic evolutionary models for retrodicting proteomes
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Function-selective domain architecture plasticity potentials in eukaryotic genome evolution
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The Classification and Evolution of Enzyme Function
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Zn-regulated GTPase metalloprotein activator 1 modulates vertebrate zinc homeostasis
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The Functional Impact of Alternative Splicing in Cancer
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Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution
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PPM-Dom: A novel method for domain position prediction
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Classification and functional analyses of putative virulence factors of Mycobacterium tuberculosis: A combined sequence and structure based study
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A cross-disease, pleiotropy-driven approach for therapeutic target prioritization and evaluation
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The language of the protein universe
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Regulatory Genomic Data Cubism
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Genome reduction and relaxed selection is associated with the transition to symbiosis in the basidiomycete genus Podaxis
inferred← citeshttps://doi.org/10.1016/j.jmb.2023.168093openalex-snapshot
The dcGO Domain-Centric Ontology Database in 2023: New Website and Extended Annotations for Protein Structural Domains
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Thermal acclimation results in persistent phosphoproteome changes in the freshwater planarian Crenobia alpina (Tricladida: Planariidae)
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Building and managing fuzzy ontologies with heterogeneous linguistic information
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An adaptable and non-invasive method for tracking Bifidobacterium animalis subspecies lactis 420 in the mouse gut
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The completed genome sequence of the pathogenic ascomycete fungus Penicillium digitatum
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The completed genome sequence of Pestalotiopsis versicolor, a pathogenic ascomycete fungus with implications for bayberry production
inferred← citeshttps://doi.org/10.1038/nmeth.2340openalex-snapshot
A large-scale evaluation of computational protein function prediction
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Adaptations of Pseudoxylaria towards a comb-associated lifestyle in fungus-farming termite colonies
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Hypothesis-free phenotype prediction within a genetics-first framework
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Human gut prophage landscape identifies a prophage-mediated fucosylation mechanism alleviating colitis
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An integrated network representation of multiple cancer-specific data for graph-based machine learning
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Mutations disrupting neuritogenesis genes confer risk for cerebral palsy
inferred← citeshttps://doi.org/10.1038/s41598-020-72569-4openalex-snapshot
Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorata
inferred← citeshttps://doi.org/10.1038/s44319-025-00521-6openalex-snapshot
Transcriptome-wide decoding the roles of aberrant splicing in melanoma MAPK-targeted resistance evolution
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A daily-updated tree of (sequenced) life as a reference for genome research
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Computational Chemistry and Molecular Modelling Basics
inferred← citeshttps://doi.org/10.1039/c3mb25495jopenalex-snapshot
A disease-drug-phenotype matrix inferred by walking on a functional domain network
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De novo transcriptome assembly and identification of G-Protein-Coupled-Receptors (GPCRs) in two species of monogenean parasites of fish
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Vector semantics of multidomain protein architectures
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab729openalex-snapshot
HPODNets: deep graph convolutional networks for predicting human protein–phenotype associations
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw114openalex-snapshot
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB
inferred← citeshttps://doi.org/10.1093/bioinformatics/bty672openalex-snapshot
Effusion: prediction of protein function from sequence similarity networks
inferred← citeshttps://doi.org/10.1093/database/bay064openalex-snapshot
SDADB: a functional annotation database of protein structural domains
inferred← citeshttps://doi.org/10.1093/molbev/mst139openalex-snapshot
The Evolution of Human Cells in Terms of Protein Innovation
inferred← citeshttps://doi.org/10.1093/nar/gkad357openalex-snapshot
OpenXGR: a web-server update for genomic summary data interpretation
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The 2013 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
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The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
inferred← citeshttps://doi.org/10.1093/nar/gku1011openalex-snapshot
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
inferred← citeshttps://doi.org/10.1093/nar/gku1041openalex-snapshot
The SUPERFAMILY 1.75 database in 2014: a doubling of data
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The Human Phenotype Ontology in 2017
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The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver
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PANNZER2: a rapid functional annotation web server
inferred← citeshttps://doi.org/10.1093/nar/gkz388openalex-snapshot
NetGO: improving large-scale protein function prediction with massive network information
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Family-specific analysis of variant pathogenicity prediction tools
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Protein Arginine Methyltransferase Expression Affects Ectomycorrhizal Symbiosis and the Regulation of Hormone Signaling Pathways
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Genomic Sequence Resource of Alternaria alternata Strain B3 Causing Leaf Blight on Ophiopogon japonicus
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First Draft Genome Sequence Resource of Colletotrichum liriopes Causing Leaf Anthracnose on Ophiopogon japonicus
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Genomic Sequence Data of Alternaria alternata hznu325 Causing Black Leaf Spot on Chrysanthemum morifolium
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The architectural design of networks of protein domain architectures
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GraphGR: A graph neural network to predict the effect of pharmacotherapy on the cancer cell growth
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Genetic risk factors for death with SARS-CoV-2 from the UK Biobank
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Characterization of the mitochondrial proteome in the ctenophore Mnemiopsis leidyi using MitoPredictor
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Linking Allele-Specific Expression And Natural Selection In Wild Populations
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Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains
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Improving queries and representing heterogeneous information in Fuzzy Ontologies using multi-granular fuzzy linguistic modelling methods
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An Integrated Framework for Functional Annotation of Protein Structural Domains
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MultiFusion2HPO: A Multimodal Deep Learning Approach for Enhancing Human Protein-Phenotype Association Prediction
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Dicer regulates Nosema ceranae proliferation in honeybees
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Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
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Family-Specific Gains and Losses of Protein Domains in the Legume and Grass Plant Families
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A domain-centric solution to functional genomics via dcGO Predictor
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DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe
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ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains
inferred← citeshttps://doi.org/10.1186/s12859-018-2380-2openalex-snapshot
Computational discovery of direct associations between GO terms and protein domains
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Assigning protein function from domain-function associations using DomFun
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Hologenome analysis of two marine sponges with different microbiomes
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Comparative genomics of plant pathogenic Botrytis species with distinct host specificity
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De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods
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The `dnet¿ approach promotes emerging research on cancer patient survival
inferred← citeshttps://doi.org/10.1186/s13073-016-0384-yopenalex-snapshot
XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits
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Effects of thermal acclimation on the proteome of the planarian Crenobia alpina from an alpine freshwater spring
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Global Patterns of Protein Domain Gain and Loss in Superkingdoms
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dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
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Pathway-specific protein domains are predictive for human diseases
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Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq
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Assigning Protein Function from Domain-Function Associations Using DomFun
inferred← citeshttps://doi.org/10.2174/1568026615666150825143307openalex-snapshot
Current Advances in the Identification and Characterization of Putative Drug and Vaccine Targets in the Bacterial Genomes
inferred← citeshttps://doi.org/10.25504/fairsharing.vxoflfopenalex-snapshot
FAIRsharing record for: Domain-centric GO
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02979openalex-snapshot
Genomic Sequencing of Phyllosticta citriasiana Provides Insight Into Its Conservation and Diversification With Two Closely Related Phyllosticta Species Associated With Citrus
inferred← citeshttps://doi.org/10.3389/fpls.2023.1182074openalex-snapshot
Ticarcillin degradation product thiophene acetic acid is a novel auxin analog that promotes organogenesis in tomato
inferred← citeshttps://doi.org/10.3390/ijms23052821openalex-snapshot
Transcriptome Profiling and Functional Validation of RING-Type E3 Ligases in Halophyte Sesuvium verrucosum under Salinity Stress
inferred← citeshttps://doi.org/10.3390/ijms23158503openalex-snapshot
The Genome of the Mimosoid Legume Prosopis cineraria, a Desert Tree
inferred← citeshttps://doi.org/10.3390/ijms231911489openalex-snapshot
Analysis of Host–Bacteria Protein Interactions Reveals Conserved Domains and Motifs That Mediate Fundamental Infection Pathways
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Computational Identification and Comparative Analysis of Secreted and Transmembrane Proteins in Six Burkholderia Species
inferred← citeshttps://doi.org/10.6026/97320630011466openalex-snapshot
Functional prediction of hypothetical proteins in human adenoviruses
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482425openalex-snapshot
Additional file 1 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482428openalex-snapshot
Additional file 2 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482431openalex-snapshot
Additional file 3 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482434openalex-snapshot
Additional file 4 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482437openalex-snapshot
Additional file 5 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482440openalex-snapshot
Additional file 6 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.6084/m9.figshare.18482443openalex-snapshot
Additional file 7 of Assigning protein function from domain-function associations using DomFun
inferred← citeshttps://doi.org/10.70675/12a8ecbfzb2f9z440aza09ezfe0661eb4ebbopenalex-snapshot
Etudes d'association genome entier guidees par des reseaux
inferred← citeshttps://doi.org/10.70675/1505b868zbf3dz407bz8328z6f73db1db5abopenalex-snapshot
Knowledge Discovery Considering Domain Literature and Ontologies : Application to Rare Diseases
inferred← citeshttps://doi.org/10.70675/2d66d07czdf06z4dc6z9ccezf834828957b0openalex-snapshot
Découverte automatique des associations cachées en utilisant la similarité vectorielle : application à la prédiction de l'annotation biologique
inferred← citeshttps://doi.org/10.70675/79708b0dzf66ez4ceazbe97z5c025ca855c0openalex-snapshot
Integrated signaling networks in C.elegans innate immunity
inferred← citeshttps://doi.org/10.7287/peerj.5298v0.1/reviews/1openalex-snapshot
Peer Review #1 of "HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5298v0.1/reviews/2openalex-snapshot
Peer Review #2 of "HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.5298v0.2/reviews/1openalex-snapshot
Peer Review #1 of "HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences (v0.2)"
inferred← citeshttps://doi.org/10.7454/mss.v24i1.12106openalex-snapshot
Protein Annotation of Breast-cancer-related Proteins with Machine-learning Tools
inferred← citeshttps://doi.org/10.7490/f1000research.1115050.1openalex-snapshot
Automatic generation of functional annotation rules using inferred GO-domain associations
inferred← citeshttps://doi.org/10.7554/elife.98152openalex-snapshot
SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.1openalex-snapshot
SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.1.sa0openalex-snapshot
Reviewer #3 (Public Review): SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.1.sa1openalex-snapshot
Reviewer #2 (Public Review): SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.1.sa2openalex-snapshot
Reviewer #1 (Public Review): SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.1.sa3openalex-snapshot
eLife Assessment: SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.2openalex-snapshot
SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7554/elife.98152.3openalex-snapshot
SERBP1 interacts with PARP1 and is present in PARylation-dependent protein complexes regulating splicing, cell division, and ribosome biogenesis
inferred← citeshttps://doi.org/10.7717/peerj.5298openalex-snapshot
HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.