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Linking Allele-Specific Expression And Natural Selection In Wild Populations

https://doi.org/10.1101/599076
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inferredcites →https://doi.org/10.1002/(sici)1097-0029(19990415)45:2<106::aid-jemt5>3.0.co;2-3openalex-snapshot
Biogenic amine systems in the fruit fly Drosophila melanogaster
inferredcites →https://doi.org/10.1002/dneu.22305openalex-snapshot
The planar cell polarity protein V angl2 is required for retinal axon guidance
inferredcites →https://doi.org/10.1002/ece3.644openalex-snapshot
High evolutionary potential of marine zooplankton
inferredcites →https://doi.org/10.1002/j.1460-2075.1990.tb08325.xopenalex-snapshot
Drosophila chaoptin, a member of the leucine‐rich repeat family, is a photoreceptor cell‐specific adhesion molecule.
inferredcites →https://doi.org/10.1007/978-1-4939-9057-3_11openalex-snapshot
Single-Cell Allele-Specific Gene Expression Analysis
inferredcites →https://doi.org/10.1007/978-94-017-1347-4_1openalex-snapshot
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inferredcites →https://doi.org/10.1007/bf00229916openalex-snapshot
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inferredcites →https://doi.org/10.1007/s00300-005-0017-1openalex-snapshot
Life histories of the copepods Pseudocalanus minutus, P. acuspes (Calanoida) and Oithona similis (Cyclopoida) in the Arctic Kongsfjorden (Svalbard)
inferredcites →https://doi.org/10.1007/s00300-016-1898-xopenalex-snapshot
Pan-Arctic population of the keystone copepod Calanus glacialis
inferredcites →https://doi.org/10.1007/s00424-007-0251-1openalex-snapshot
Phototransduction and retinal degeneration in Drosophila
inferredcites →https://doi.org/10.1007/s00439-016-1654-xopenalex-snapshot
Allele-specific transcription factor binding to common and rare variants associated with disease and gene expression
inferredcites →https://doi.org/10.1016/j.ajhg.2008.05.003openalex-snapshot
Monozygotic Twins Reveal Germline Contribution to Allelic Expression Differences
inferredcites →https://doi.org/10.1016/j.cub.2016.07.063openalex-snapshot
Arthropod neurons and nervous system
inferredcites →https://doi.org/10.1016/j.gene.2013.09.029openalex-snapshot
Genome-wide identification of allele-specific effects on gene expression for single and multiple individuals
inferredcites →https://doi.org/10.1016/j.gpb.2013.05.006openalex-snapshot
A Computational Workflow to Identify Allele-Specific Expression and Epigenetic Modification in Maize
inferredcites →https://doi.org/10.1016/j.jembe.2014.10.006openalex-snapshot
Comparative phylogeography and demographic history of five sibling species of Pseudocalanus (Copepoda: Calanoida) in the North Atlantic Ocean
inferredcites →https://doi.org/10.1016/j.neuron.2017.01.033openalex-snapshot
Diverse Non-genetic, Allele-Specific Expression Effects Shape Genetic Architecture at the Cellular Level in the Mammalian Brain
inferredcites →https://doi.org/10.1016/j.pocean.2006.10.003openalex-snapshot
Food webs and carbon flux in the Barents Sea
inferredcites →https://doi.org/10.1016/j.pocean.2008.12.003openalex-snapshot
Structure and variability of the West Greenland Current in Summer derived from 6 repeat standard sections
inferredcites →https://doi.org/10.1016/j.polar.2012.09.001openalex-snapshot
Seasonal mortality rates of Oithona similis (Cyclopoida) in a large Arctic fjord
inferredcites →https://doi.org/10.1016/j.tig.2018.03.007openalex-snapshot
The Evolution of Gene Expression in cis and trans
inferredcites →https://doi.org/10.1016/j.ympev.2016.12.019openalex-snapshot
Global phylogeography of Oithona similis s.l. (Crustacea, Copepoda, Oithonidae) – A cosmopolitan plankton species or a complex of cryptic lineages?
inferredcites →https://doi.org/10.1016/s0896-6273(00)80699-6openalex-snapshot
From Fruit Flies to Barnacles, Histamine Is the Neurotransmitter of Arthropod Photoreceptors
inferredcites →https://doi.org/10.1021/acschemneuro.5b00326openalex-snapshot
Quantification of Histamine and Carcinine in Drosophila melanogaster Tissues
inferredcites →https://doi.org/10.1038/132767a0openalex-snapshot
Faune de France 26: Copépodes pélagiques
inferredcites →https://doi.org/10.1038/nature12531openalex-snapshot
Transcriptome and genome sequencing uncovers functional variation in humans
inferredcites →https://doi.org/10.1038/ncomms11388openalex-snapshot
Arabidopsis PROTEASOME REGULATOR1 is required for auxin-mediated suppression of proteasome activity and regulates auxin signalling
inferredcites →https://doi.org/10.1038/ncomms12824openalex-snapshot
Loss of RNA expression and allele-specific expression associated with congenital heart disease
inferredcites →https://doi.org/10.1038/ng.3162openalex-snapshot
Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins
inferredcites →https://doi.org/10.1038/ng.473openalex-snapshot
Global patterns of cis variation in human cells revealed by high-density allelic expression analysis
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/nmeth.4298openalex-snapshot
Allele-specific expression reveals interactions between genetic variation and environment
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/s41598-017-12179-9openalex-snapshot
RNA-Seq Analyses Identify Frequent Allele Specific Expression and No Evidence of Genomic Imprinting in Specific Embryonic Tissues of Chicken
inferredcites →https://doi.org/10.1038/sdata.2015.23openalex-snapshot
Open science resources for the discovery and analysis of Tara Oceans data
inferredcites →https://doi.org/10.1038/sdata.2017.93openalex-snapshot
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
inferredcites →https://doi.org/10.1038/srep41926openalex-snapshot
Limb proportions show developmental plasticity in response to embryo movement
inferredcites →https://doi.org/10.1046/j.0962-1083.2001.01306.xopenalex-snapshot
Phylogeography of the intertidal copepod Tigriopus californicus reveals substantially reduced population differentiation at northern latitudes
inferredcites →https://doi.org/10.1073/pnas.1222534110openalex-snapshot
Deciphering the rules by which 5′-UTR sequences affect protein expression in yeast
inferredcites →https://doi.org/10.1073/pnas.1503027112openalex-snapshot
Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression
inferredcites →https://doi.org/10.1073/pnas.1612561114openalex-snapshot
Genomic analysis reveals major determinants of cis- regulatory variation in Capsella grandiflora
inferredcites →https://doi.org/10.1073/pnas.90.23.11157openalex-snapshot
Drosophila retinal degeneration A gene encodes an eye-specific diacylglycerol kinase with cysteine-rich zinc-finger motifs and ankyrin repeats.
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/bts611openalex-snapshot
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btu802openalex-snapshot
QuASAR: quantitative allele-specific analysis of reads
inferredcites →https://doi.org/10.1093/bioinformatics/btv074openalex-snapshot
Assessing allele-specific expression across multiple tissues from RNA-seq read data
inferredcites →https://doi.org/10.1093/bioinformatics/btv321openalex-snapshot
ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments
inferredcites →https://doi.org/10.1093/bioinformatics/btx762openalex-snapshot
ASElux: an ultra-fast and accurate allelic reads counter
inferredcites →https://doi.org/10.1093/cz/zow067openalex-snapshot
Navigating the currents of seascape genomics: how spatial analyses can augment population genomic studies
inferredcites →https://doi.org/10.1093/gbe/evx080openalex-snapshot
Bayesian Inference of Allele-Specific Gene Expression Indicates Abundant Cis-Regulatory Variation in Natural Flycatcher Populations
inferredcites →https://doi.org/10.1093/genetics/74.1.175openalex-snapshot
DISTRIBUTION OF GENE FREQUENCY AS A TEST OF THE THEORY OF THE SELECTIVE NEUTRALITY OF POLYMORPHISMS
inferredcites →https://doi.org/10.1093/hmg/ddy027openalex-snapshot
Genome-wide comparison of allele-specific gene expression between African and European populations
inferredcites →https://doi.org/10.1093/jhered/89.5.383openalex-snapshot
Low mitochondrial diversity and small effective population sizes of the copepods Calanus finmarchicus and Nannocalanus minor: possible impact of climatic variation during recent glaciation
inferredcites →https://doi.org/10.1093/molbev/msp255openalex-snapshot
Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula
inferredcites →https://doi.org/10.1093/nar/gks1080openalex-snapshot
dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more
inferredcites →https://doi.org/10.1093/nar/gks1205openalex-snapshot
Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity
inferredcites →https://doi.org/10.1093/nar/gku1187openalex-snapshot
Reference-free detection of isolated SNPs
inferredcites →https://doi.org/10.1093/plankt/22.6.1155openalex-snapshot
Remote prey detection in Oithona similis: hydromechanical versus chemical cues
inferredcites →https://doi.org/10.1093/plankt/23.12.1421openalex-snapshot
Is Oithona the most important copepod in the world's oceans?
inferredcites →https://doi.org/10.1093/plankt/fbn002openalex-snapshot
Magnitude of mesozooplankton variability: a case study from the Marginal Ice Zone of the Barents Sea in spring
inferredcites →https://doi.org/10.1093/plankt/fbq159openalex-snapshot
What makes pelagic copepods so successful?
inferredcites →https://doi.org/10.1093/plankt/fbw012openalex-snapshot
Marine zooplankton and the Metabolic Theory of Ecology: is it a predictive tool?
inferredcites →https://doi.org/10.1093/plankt/fbx035openalex-snapshot
Population genetic structure of Calanoides natalis (Copepoda, Calanoida) in the eastern Atlantic Ocean and Benguela upwelling system
inferredcites →https://doi.org/10.1098/rsif.2010.0176openalex-snapshot
Unsteady motion: escape jumps in planktonic copepods, their kinematics and energetics
inferredcites →https://doi.org/10.1101/209965openalex-snapshot
DiscoSnp++ : de novo detection of small variants from raw unassembled read set(s)
inferredcites →https://doi.org/10.1101/gad.275958.115openalex-snapshot
Visualizing allele-specific expression in single cells reveals epigenetic mosaicism in an H19 loss-of-imprinting mutant
inferredcites →https://doi.org/10.1101/gad.9.24.3097openalex-snapshot
Allele-specific expression and total expression levels of imprinted genes during early mouse development: implications for imprinting mechanisms.
inferredcites →https://doi.org/10.1101/gr.083931.108openalex-snapshot
Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation
inferredcites →https://doi.org/10.1101/gr.119784.110openalex-snapshot
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
inferredcites →https://doi.org/10.1101/gr.152710.112openalex-snapshot
Gene expression drives local adaptation in humans
inferredcites →https://doi.org/10.1101/gr.209759.116openalex-snapshot
High-throughput allele-specific expression across 250 environmental conditions
inferredcites →https://doi.org/10.1111/1755-0998.12592openalex-snapshot
pcadapt : an R package to perform genome scans for selection based on principal component analysis
inferredcites →https://doi.org/10.1111/1755-0998.12985openalex-snapshot
Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea
inferredcites →https://doi.org/10.1111/evo.13650openalex-snapshot
The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04970.xopenalex-snapshot
Allele-specific gene expression in a wild nonhuman primate population
inferredcites →https://doi.org/10.1111/j.1469-1809.1949.tb02451.xopenalex-snapshot
THE GENETICAL STRUCTURE OF POPULATIONS
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/mec.13581openalex-snapshot
New view of population genetics of zooplankton: RAD ‐seq analysis reveals population structure of the North Atlantic planktonic copepod Centropages typicus
inferredcites →https://doi.org/10.1111/mec.14214openalex-snapshot
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona
inferredcites →https://doi.org/10.1126/science.1261877openalex-snapshot
Effect of predicted protein-truncating genetic variants on the human transcriptome
inferredcites →https://doi.org/10.1186/1475-925x-13-94openalex-snapshot
Machine learning, medical diagnosis, and biomedical engineering research - commentary
inferredcites →https://doi.org/10.1186/gb-2002-3-3-reviews0004openalex-snapshot
Untranslated regions of mRNAs.
inferredcites →https://doi.org/10.1186/s12864-015-1749-0openalex-snapshot
Analyzing allele specific RNA expression using mixture models
inferredcites →https://doi.org/10.1186/s13059-014-0405-3openalex-snapshot
MBASED: allele-specific expression detection in cancer tissues and cell lines
inferredcites →https://doi.org/10.1186/s13059-015-0762-6openalex-snapshot
Tools and best practices for data processing in allelic expression analysis
inferredcites →https://doi.org/10.1214/aos/1176346577openalex-snapshot
The Dip Test of Unimodality
inferredcites →https://doi.org/10.1242/bio.20147310openalex-snapshot
chaoptin, prominin, eyes shut and crumbs form a genetic network controlling the apical compartment of Drosophila photoreceptor cells
inferredcites →https://doi.org/10.1242/dev.00411openalex-snapshot
Strabismus requires Flamingo and Prickle function to regulate tissue polarity in theDrosophilaeye
inferredcites →https://doi.org/10.1371/journal.pbio.1001177openalex-snapshot
A Holistic Approach to Marine Eco-Systems Biology
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1534/g3.117.300139openalex-snapshot
Direct Testing for Allele-Specific Expression Differences Between Conditions
inferredcites →https://doi.org/10.1534/genetics.109.103499openalex-snapshot
Global Analysis of Allele-Specific Expression in Arabidopsis thaliana
inferredcites →https://doi.org/10.1554/05-077.1openalex-snapshot
GLOBAL POPULATION GENETIC STRUCTURE AND BIOGEOGRAPHY OF THE OCEANIC COPEPODS EUCALANUS HYALINUS AND E. SPINIFER
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.3354/meps10288openalex-snapshot
Plankton community structure and role of Oithona similis on the western coast of Greenland during the winter-spring transition
inferredcites →https://doi.org/10.3389/fgene.2018.00523openalex-snapshot
Redundancy, Feedback, and Robustness in the Arabidopsis thaliana BZR/BEH Gene Family
inferredcites →https://doi.org/10.3389/fgene.2018.00570openalex-snapshot
A Genome-Wide Study of Allele-Specific Expression in Colorectal Cancer
inferredcites →https://doi.org/10.3791/50203openalex-snapshot
Chromosome Preparation From Cultured Cells
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.4161/rna.20231openalex-snapshot
The role of the 3' untranslated region in post-transcriptional regulation of protein expression in mammalian cells.
inferredcites →https://doi.org/10.5120/739-1038openalex-snapshot
A Density Based Algorithm for Discovering Density Varied Clusters in Large Spatial Databases
inferredcites →https://doi.org/10.7717/peerj.3798openalex-snapshot
Allele specific expression and methylation in the bumblebee, Bombus terrestris
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