On the public citation graph
The neXtProt knowledgebase in 2020: data, tools and usability improvements
0 signed · 243 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/humu.23191openalex-snapshot
Annotation of functional impact of voltage-gated sodium channel mutations
inferredcites →https://doi.org/10.1002/pro.3307openalex-snapshot
The human protein atlas: A spatial map of the human proteome
inferredcites →https://doi.org/10.1007/978-3-540-69828-9_12openalex-snapshot
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species
inferredcites →https://doi.org/10.1016/j.cell.2016.06.041openalex-snapshot
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome
inferredcites →https://doi.org/10.1016/s0014-5793(03)01197-9openalex-snapshot
A microscope‐based screening platform for large‐scale functional protein analysis in intact cells
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00500openalex-snapshot
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet
inferredcites →https://doi.org/10.1021/acs.jproteome.6b00392openalex-snapshot
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00766openalex-snapshot
GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical
inferredcites →https://doi.org/10.1021/acs.jproteome.9b00064openalex-snapshot
Proteomics Standards Initiative Extended FASTA Format
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature19057openalex-snapshot
Analysis of protein-coding genetic variation in 60,706 humans
inferredcites →https://doi.org/10.1093/bioinformatics/btx318openalex-snapshot
The neXtProt peptide uniqueness checker: a tool for the proteomics community
inferredcites →https://doi.org/10.1093/embo-reports/kvd058openalex-snapshot
Systematic subcellular localization of novel proteins identified by large‐scale cDNA sequencing
inferredcites →https://doi.org/10.1093/nar/29.1.308openalex-snapshot
dbSNP: the NCBI database of genetic variation
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkp808openalex-snapshot
Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells
inferredcites →https://doi.org/10.1093/nar/gkt1115openalex-snapshot
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
inferredcites →https://doi.org/10.1093/nar/gku1113openalex-snapshot
The GOA database: Gene Ontology annotation updates for 2015
inferredcites →https://doi.org/10.1093/nar/gkw1062openalex-snapshot
The neXtProt knowledgebase on human proteins: 2017 update
inferredcites →https://doi.org/10.1093/nar/gkw1099openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkw1121openalex-snapshot
COSMIC: somatic cancer genetics at high-resolution
inferredcites →https://doi.org/10.1093/nar/gky1055openalex-snapshot
The Gene Ontology Resource: 20 years and still GOing strong
inferredcites →https://doi.org/10.1093/nar/gkz995openalex-snapshot
The neXtProt knowledgebase in 2020: data, tools and usability improvements
inferredcites →https://doi.org/10.1126/science.1260419openalex-snapshot
Tissue-based map of the human proteome
inferredcites →https://doi.org/10.1186/s40246-018-0168-0openalex-snapshot
A new bioinformatics tool to help assess the significance of BRCA1 variants
inferredcites →https://doi.org/10.7490/f1000research.1116829.1openalex-snapshot
A Critical Guide to the neXtProt knowledgebase: querying using SPARQL
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.3862019openalex-extracted
Enzymatic Activity of Glycosyltransferase Glt8d1 Promotes Human Glioblastoma Cells Migration
inferred← citeshttps://doi.org/10.1002/1878-0261.13195openalex-snapshot
FET fusion oncoproteins interact with BRD4 and SWI/SNF chromatin remodelling complex subtypes in sarcoma
inferred← citeshttps://doi.org/10.1002/9783527830497.ch1openalex-snapshot
Open Access Databases and Datasets for Computer‐Aided Drug Design. A Short List Used in the Molecular Modelling Group of the SIB
inferred← citeshttps://doi.org/10.1002/alz.12254openalex-snapshot
Integrative functional genomic analysis of intron retention in human and mouse brain with Alzheimer's disease
inferred← citeshttps://doi.org/10.1002/mgg3.2451openalex-snapshot
Mexican patient with Ellis‐van Creveld syndrome and cleft palate: Importance of functional hemizygosity and phenotype expansion
inferred← citeshttps://doi.org/10.1002/pmic.201900362openalex-snapshot
Extending Comet for Global Amino Acid Variant and Post‐Translational Modification Analysis Using the PSI Extended FASTA Format
inferred← citeshttps://doi.org/10.1002/pmic.202100036openalex-snapshot
Resourcing, annotating, and analysing synthetic peptides of SARS‐CoV‐2 for immunopeptidomics and other immunological studies
inferred← citeshttps://doi.org/10.1007/978-1-0716-1406-8_2openalex-snapshot
Computational Methods for the Elucidation of Protein Structure and Interactions
inferred← citeshttps://doi.org/10.1007/978-1-0716-1562-1_16openalex-snapshot
Combination of Antibody Arrays to Functionally Characterize Dark Proteins in Human Olfactory Neuroepithelial Cells
inferred← citeshttps://doi.org/10.1007/978-1-0716-3946-7_21openalex-snapshot
The Digital World of Cytogenetic and Cytogenomic Web Resources
inferred← citeshttps://doi.org/10.1007/978-1-0716-4662-5_10openalex-snapshot
Annotating genomes with DeepGO protein function prediction tools
inferred← citeshttps://doi.org/10.1007/978-3-031-17105-5_11openalex-snapshot
EBOCA: Evidences for BiOmedical Concepts Association Ontology
inferred← citeshttps://doi.org/10.1007/s00726-021-03119-zopenalex-snapshot
Current status of PTMs structural databases: applications, limitations and prospects
inferred← citeshttps://doi.org/10.1007/s10517-025-06432-9openalex-snapshot
Potential Markers for Thyroid Neoplasms in the Upstream Analysis of the Plasma Proteome
inferred← citeshttps://doi.org/10.1007/s10565-024-09981-3openalex-snapshot
Proteomic patterns associated with ketamine response in major depressive disorders
inferred← citeshttps://doi.org/10.1007/s11102-026-01672-yopenalex-snapshot
A novel pathogenic AIP variant associated with familial isolated pituitary adenoma
inferred← citeshttps://doi.org/10.1007/s11357-023-00961-9openalex-snapshot
OVCH1 Antisense RNA 1 is differentially expressed between non-frail and frail old adults
inferred← citeshttps://doi.org/10.1007/s13346-025-01799-8openalex-snapshot
Nanotechnology in Parkinson’s Disease: overcoming drug delivery challenges and enhancing therapeutic outcomes
inferred← citeshttps://doi.org/10.1007/s42485-023-00118-4openalex-snapshot
Proteogenomics 101: a primer on database search strategies
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00192-5openalex-snapshot
Proteomics Data Representation and Databases
inferred← citeshttps://doi.org/10.1016/bs.armc.2024.10.002openalex-snapshot
Computational strategies for the design of proteolysis targeting chimera degraders: Artificial intelligence enabled PROTAC design
inferred← citeshttps://doi.org/10.1016/j.archoralbio.2023.105640openalex-snapshot
Variants in interferon gamma inducible protein 16 (IFI16) and absent in melanoma 2 (AIM2) genes that modulate inflammatory response are associated with periodontitis
inferred← citeshttps://doi.org/10.1016/j.biochi.2025.03.009openalex-snapshot
Master of disguise: ribosomal protein L5 beyond translation
inferred← citeshttps://doi.org/10.1016/j.biochi.2025.04.003openalex-snapshot
Human prostacyclin and thromboxane synthases: Molecular interactions, regulation, and pharmacology
inferred← citeshttps://doi.org/10.1016/j.biomaterials.2021.120707openalex-snapshot
Neurothreads: Development of supportive carriers for mature dopaminergic neuron differentiation and implantation
inferred← citeshttps://doi.org/10.1016/j.bioorg.2023.106427openalex-snapshot
New trends in synthetic drugs and natural products targeting 20S proteasomes in cancers
inferred← citeshttps://doi.org/10.1016/j.cbd.2023.101070openalex-snapshot
Characterizing the origin of blood plasma proteins from organ tissues in rainbow trout (Oncorhynchus mykiss) using a comparative non-targeted proteomics approach
inferred← citeshttps://doi.org/10.1016/j.clineuro.2020.106222openalex-snapshot
Genetic alterations in non-syndromic, familial gliomas in first degree relatives: A systematic review
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.12.012openalex-snapshot
Inferring early-life host and microbiome functions by mass spectrometry-based metaproteomics and metabolomics
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.12.033openalex-snapshot
PgxSAVy: A tool for comprehensive evaluation of variant peptide quality in proteogenomics – catching the (un)usual suspects
inferred← citeshttps://doi.org/10.1016/j.csbj.2025.10.035openalex-snapshot
PredLyP: A computational tool for predicting tissue-specific (phago-)lysosomal post-digestion peptides
inferred← citeshttps://doi.org/10.1016/j.ddtec.2021.06.007openalex-snapshot
Recent advances in mass-spectrometry based proteomics software, tools and databases
inferred← citeshttps://doi.org/10.1016/j.eclinm.2021.101093openalex-snapshot
Novel genetic variants associated with mortality after unrelated donor allogeneic hematopoietic cell transplantation
inferred← citeshttps://doi.org/10.1016/j.euprot.2020.11.001openalex-snapshot
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
inferred← citeshttps://doi.org/10.1016/j.isci.2022.103842openalex-snapshot
Enzymatic activity of glycosyltransferase GLT8D1 promotes human glioblastoma cell migration
inferred← citeshttps://doi.org/10.1016/j.isci.2024.111423openalex-snapshot
Integrated proteomic and transcriptomic landscape of human placenta in small for gestational age infants
inferred← citeshttps://doi.org/10.1016/j.jes.2022.03.033openalex-snapshot
Assessment of risks, implications, and opportunities of waterborne neurotoxic pesticides
inferred← citeshttps://doi.org/10.1016/j.jmb.2021.166840openalex-snapshot
ADDRESS: A Database of Disease-associated Human Variants Incorporating Protein Structure and Folding Stabilities
inferred← citeshttps://doi.org/10.1016/j.jmb.2022.167567openalex-snapshot
Venus: Elucidating the Impact of Amino Acid Variants on Protein Function Beyond Structure Destabilisation
inferred← citeshttps://doi.org/10.1016/j.jmsacl.2023.11.001openalex-snapshot
Molecular and translational biology of the blood-based VeriStrat® proteomic test used in cancer immunotherapy treatment guidance
inferred← citeshttps://doi.org/10.1016/j.jtha.2024.01.010openalex-snapshot
Density-based lipoprotein depletion improves extracellular vesicle isolation and functional analysis
inferred← citeshttps://doi.org/10.1016/j.mcpro.2021.100186openalex-snapshot
Subcellular Transcriptomics and Proteomics: A Comparative Methods Review
inferred← citeshttps://doi.org/10.1016/j.tube.2024.102500openalex-snapshot
Computational drug repositioning identifies niclosamide and tribromsalan as inhibitors of Mycobacterium tuberculosis and Mycobacterium abscessus
inferred← citeshttps://doi.org/10.1016/j.xpro.2022.101905openalex-snapshot
Prediction and verification of glycosyltransferase activity by bioinformatics analysis and protein engineering
inferred← citeshttps://doi.org/10.1021/acs.analchem.0c02288openalex-snapshot
Development of a Parallel Reaction Monitoring Mass Spectrometry Assay for the Detection of SARS-CoV-2 Spike Glycoprotein and Nucleoprotein
inferred← citeshttps://doi.org/10.1021/acs.analchem.0c02513openalex-snapshot
PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies
inferred← citeshttps://doi.org/10.1021/acs.analchem.0c04704openalex-snapshot
DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning
inferred← citeshttps://doi.org/10.1021/acs.analchem.5c04479openalex-snapshot
Spectral Quality-Guided Optimization of Hybrid EAciD Fragmentation on the ZenoTOF 7600 System Enables Efficient Characterization of the Serum N -Glycoproteome
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00364openalex-snapshot
UPEFinder: A Bioinformatic Tool for the Study of Uncharacterized Proteins Based on Gene Expression Correlation and the PageRank Algorithm
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00370openalex-snapshot
Open-pFind Verified Four Missing Proteins from Multi-Tissues
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00452openalex-snapshot
Smelling the Dark Proteome: Functional Characterization of PITH Domain-Containing Protein 1 (C1orf128) in Olfactory Metabolism
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00482openalex-snapshot
Bioinformatic Prediction of Gene Ontology Terms of Uncharacterized Proteins from Chromosome 11
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00485openalex-snapshot
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00486openalex-snapshot
Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00516openalex-snapshot
The Functionally Unannotated Proteome of Human Male Tissues: A Shared Resource to Uncover New Protein Functions Associated with Reproductive Biology
inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00856openalex-snapshot
Proteomic Analysis of Chr 18 Proteins Using 2D Fractionation
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00289openalex-snapshot
Biochemical Tools for Tracking Proteolysis
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00506openalex-snapshot
DIA-Based Proteome Profiling of Nasopharyngeal Swabs from COVID-19 Patients
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00511openalex-snapshot
Deciphering the Interregional and Interhemisphere Proteome of the Human Brain in the Context of the Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00540openalex-snapshot
Flashlight into the Function of Unannotated C11orf52 using Affinity Purification Mass Spectrometry
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00590openalex-snapshot
Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.1c00827openalex-snapshot
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00033openalex-snapshot
Validating Amino Acid Variants in Proteogenomics Using Sequence Coverage by Multiple Reads
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00131openalex-snapshot
Profiling the Human Phosphoproteome to Estimate the True Extent of Protein Phosphorylation
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00382openalex-snapshot
Tissue Proteogenomic Landscape Reveals the Role of Uncharacterized SEL1L3 in Progression and Immunotherapy Response in Lung Adenocarcinoma
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00392openalex-snapshot
Spatial Proteomics for Further Exploration of Missing Proteins: A Case Study of the Ovary
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00406openalex-snapshot
Integrated View of Baseline Protein Expression in Human Tissues
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00498openalex-snapshot
The 2022 Report on the Human Proteome from the HUPO Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.2c00608openalex-snapshot
AlacatDesigner─Computational Design of Peptide Concatamers for Protein Quantitation
inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00196openalex-snapshot
Proteogenomics in Cancer: Then and Now
inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00545openalex-snapshot
Transcriptomics and Spatial Proteomics for Discovery and Validation of Missing Proteins in the Human Ovary
inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00591openalex-snapshot
The 2023 Report on the Proteome from the HUPO Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00632openalex-snapshot
New Function Annotation of PROSER2 in Pancreatic Ductal Adenocarcinoma
inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00674openalex-snapshot
Identifying PE2 and PE5 Proteins from Existing Mass Spectrometry Data Using pFind
inferred← citeshttps://doi.org/10.1021/acs.jproteome.4c00027openalex-snapshot
Identification and Quantification of Human Relaxin Proteins by Immunoaffinity-Mass Spectrometry
inferred← citeshttps://doi.org/10.1021/acs.jproteome.4c00104openalex-snapshot
Deep Plasma Proteomics with Data-Independent Acquisition: Clinical Study Protocol Optimization with a COVID-19 Cohort
inferred← citeshttps://doi.org/10.1021/acs.jproteome.4c00586openalex-snapshot
The Circulating Proteome─Technological Developments, Current Challenges, and Future Trends
inferred← citeshttps://doi.org/10.1021/acs.jproteome.5c00167openalex-snapshot
Evaluation of PE5 Entries on the Human Proteome Project Target List
inferred← citeshttps://doi.org/10.1021/acs.jproteome.5c00759openalex-snapshot
The 2025 Report on the Human Proteome from the HUPO Human Proteome Project
inferred← citeshttps://doi.org/10.1021/acs.jproteome.5c01235openalex-snapshot
ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics
inferred← citeshttps://doi.org/10.1021/acs.jproteome.5c01259openalex-snapshot
Mass Spectrometric Detected Cancer Proteins as Resources for Cancer Research
inferred← citeshttps://doi.org/10.1021/acs.jproteome.9b00064openalex-snapshot
Proteomics Standards Initiative Extended FASTA Format
inferred← citeshttps://doi.org/10.1021/acsomega.2c00466openalex-snapshot
Multiaspect Examinations of Possible Alternative Mappings of Identified Variant Peptides: A Case Study on the HEK293 Cell Line
inferred← citeshttps://doi.org/10.1021/acsomega.6c07804openalex-snapshot
MPDD: A Curated Database Bridging Membrane Protein-Drug-Disease Landscapes
inferred← citeshttps://doi.org/10.1021/acssynbio.0c00542openalex-snapshot
Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering
inferred← citeshttps://doi.org/10.1021/jacs.4c05121openalex-snapshot
Same Day Access to Folded Synthetic Proteins
inferred← citeshttps://doi.org/10.1038/s41420-022-01122-1openalex-snapshot
Platelet proteome reveals features of cell death, antiviral response and viral replication in covid-19
inferred← citeshttps://doi.org/10.1038/s41420-024-02207-9openalex-snapshot
TMEM209 promotes hepatocellular carcinoma progression by activating the Wnt/β-catenin signaling pathway through KPNB1 stabilization
inferred← citeshttps://doi.org/10.1038/s41467-020-19045-9openalex-snapshot
A high-stringency blueprint of the human proteome
inferred← citeshttps://doi.org/10.1038/s41467-022-31062-4openalex-snapshot
Revealing the human mucinome
inferred← citeshttps://doi.org/10.1038/s41467-023-39272-0openalex-snapshot
Inherited ARPC5 mutations cause an actinopathy impairing cell motility and disrupting cytokine signaling
inferred← citeshttps://doi.org/10.1038/s41467-025-57916-1openalex-snapshot
In-depth plasma N-glycoproteome profiling using narrow-window data-independent acquisition on the Orbitrap Astral mass spectrometer
inferred← citeshttps://doi.org/10.1038/s41586-026-10459-xopenalex-snapshot
Expanding the human proteome with microproteins and peptideins
inferred← citeshttps://doi.org/10.1038/s41596-022-00690-xopenalex-snapshot
Simple, efficient and thorough shotgun proteomic analysis with PatternLab V
inferred← citeshttps://doi.org/10.1038/s41597-022-01807-3openalex-snapshot
Unifying the identification of biomedical entities with the Bioregistry
inferred← citeshttps://doi.org/10.1038/s41597-023-02617-xopenalex-snapshot
Europe PMC annotated full-text corpus for gene/proteins, diseases and organisms
inferred← citeshttps://doi.org/10.1038/s41598-021-03260-5openalex-snapshot
MYCL promotes iPSC-like colony formation via MYC Box 0 and 2 domains
inferred← citeshttps://doi.org/10.1038/s41598-021-92023-3openalex-snapshot
Whole-exome sequencing reveals a novel homozygous mutation in the COQ8B gene associated with nephrotic syndrome
inferred← citeshttps://doi.org/10.1038/s41598-021-94474-0openalex-snapshot
Proteomics reveals disturbances in the immune response and energy metabolism of monocytes from patients with septic shock
inferred← citeshttps://doi.org/10.1038/s42256-024-00795-wopenalex-snapshot
Protein function prediction as approximate semantic entailment
inferred← citeshttps://doi.org/10.1038/s44320-026-00218-5openalex-snapshot
Immunoglobulin sub-class levels define inter-donor plasma variability: a longitudinal dual-lab study
inferred← citeshttps://doi.org/10.1073/pnas.2604562123openalex-snapshot
A functional map of the human intrinsically disordered proteome
inferred← citeshttps://doi.org/10.1080/09537104.2023.2224454openalex-snapshot
Combining human platelet proteomes and transcriptomes: possibilities and challenges
inferred← citeshttps://doi.org/10.1080/14756366.2020.1781846openalex-snapshot
Human carbonic anhydrases and post-translational modifications: a hidden world possibly affecting protein properties and functions
inferred← citeshttps://doi.org/10.1080/14789450.2020.1733418openalex-snapshot
What will neXtProt help us achieve in 2020 and beyond?
inferred← citeshttps://doi.org/10.1080/14789450.2021.1908895openalex-snapshot
The clinical potential of prm-PASEF mass spectrometry
inferred← citeshttps://doi.org/10.1088/1742-6596/2400/1/012017openalex-snapshot
Drug-target interaction prediction using high order nonlinear features via neural factorization machines
inferred← citeshttps://doi.org/10.1089/aivt.2021.0010openalex-snapshot
Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content
inferred← citeshttps://doi.org/10.1093/bioadv/vbad154openalex-snapshot
JSONWP: a static website generator for protein bioinformatics research
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa055openalex-snapshot
The Feature-Viewer: a visualization tool for positional annotations on a sequence
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa104openalex-snapshot
Michela Ngl o: sculpting protein views on web pages without coding
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab764openalex-snapshot
ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab809openalex-snapshot
ProteoDisco: a flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies
inferred← citeshttps://doi.org/10.1093/database/baab046openalex-snapshot
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students
inferred← citeshttps://doi.org/10.1093/gpbjnl/qzag018openalex-snapshot
StarFunc: Fusing Template-based and Deep Learning Approaches for Accurate Protein Function Prediction
inferred← citeshttps://doi.org/10.1093/jxb/erac290openalex-snapshot
N-terminal modifications, the associated processing machinery, and their evolution in plastid-containing organisms
inferred← citeshttps://doi.org/10.1093/nar/gkaa1024openalex-snapshot
WikiPathways: connecting communities
inferred← citeshttps://doi.org/10.1093/nar/gkaa1036openalex-snapshot
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes
inferred← citeshttps://doi.org/10.1093/nar/gkaa339openalex-snapshot
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins
inferred← citeshttps://doi.org/10.1093/nar/gkab225openalex-snapshot
Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users
inferred← citeshttps://doi.org/10.1093/nar/gkac1040openalex-snapshot
The ProteomeXchange consortium at 10 years: 2023 update
inferred← citeshttps://doi.org/10.1093/nar/gkac998openalex-snapshot
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
inferred← citeshttps://doi.org/10.1093/nar/gkad800openalex-snapshot
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
inferred← citeshttps://doi.org/10.1093/nar/gkae987openalex-snapshot
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes
inferred← citeshttps://doi.org/10.1101/2020.01.30.927244openalex-snapshot
Neurothreads: Cryogel carrier-based differentiation and delivery of mature neurons in the treatment of Parkinson’s disease
inferred← citeshttps://doi.org/10.1101/2021.10.18.464791openalex-snapshot
A method for independent estimation of false localisation rate for phosphoproteomics
inferred← citeshttps://doi.org/10.1101/2022.07.08.499378openalex-snapshot
Unifying the Identification of Biomedical Entities with the Bioregistry
inferred← citeshttps://doi.org/10.1101/2023.09.26.559473openalex-snapshot
DeepGO-SE: Protein function prediction as Approximate Semantic Entailment
inferred← citeshttps://doi.org/10.1101/2023.09.30.23296386openalex-snapshot
Methylomic, proteomic, and metabolomic correlates of traffic-related air pollution: A systematic review, pathway analysis, and network analysis relating traffic-related air pollution to subclinical and clinical cardiorespiratory outcomes
inferred← citeshttps://doi.org/10.1101/2024.02.23.581160openalex-snapshot
Deep plasma proteomics with data-independent acquisition: A fastlane towards biomarkers identification
inferred← citeshttps://doi.org/10.1101/2024.07.29.605591openalex-snapshot
Narrow window data-independent acquisition on the Orbitrap Astral Mass Spectrometer enables fast and deep coverage of the plasma glycoproteome
inferred← citeshttps://doi.org/10.1101/2024.11.14.623419openalex-snapshot
A deep audit of the PeptideAtlas database uncovers evidence for unannotated coding genes and aberrant translation
inferred← citeshttps://doi.org/10.1101/2024.11.25.625239openalex-snapshot
Leveraging the Human Panproteome to Enhance Peptide and Protein Identification in Proteomics and Metaproteomics
inferred← citeshttps://doi.org/10.1101/2025.02.19.639069openalex-snapshot
Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment
inferred← citeshttps://doi.org/10.1109/cbms65348.2025.00057openalex-snapshot
Prioritization of Potential Drugs Through Pathway-Based Drug Repurposing and Network Proximity Analysis
inferred← citeshttps://doi.org/10.1111/and.14620openalex-snapshot
Chromosome 17 translocation affects sperm morphology: Two case studies and literature review
inferred← citeshttps://doi.org/10.1111/bjd.19891openalex-snapshot
Melanoma‐associated glycosyltransferase GCNT2 as an emerging biomarker and therapeutic target*
inferred← citeshttps://doi.org/10.1111/jbg.12777openalex-snapshot
Phenotypic variation in milk fatty acid composition and its association with stearoyl‐CoA desaturase 1 ( SCD1 ) gene polymorphisms in Gir cows
inferred← citeshttps://doi.org/10.1111/odi.13316openalex-snapshot
Novel TSPEAR mutations in non‐syndromic oligodontia
inferred← citeshttps://doi.org/10.1146/annurev-genom-102822-100509openalex-snapshot
DECIPHER: Improving Genetic Diagnosis Through Dynamic Integration of Genomic and Clinical Data
inferred← citeshttps://doi.org/10.1155/2021/9987115openalex-snapshot
Alterations in Gene Expression of Renin-Angiotensin System Components and Related Proteins in Colorectal Cancer
inferred← citeshttps://doi.org/10.1177/22104968251361286openalex-snapshot
SPARQL Federated Query Debugging Tool
inferred← citeshttps://doi.org/10.1186/s12014-022-09352-2openalex-snapshot
Transcriptome profiling and proteomic validation reveals targets of the androgen receptor signaling in the BT-474 breast cancer cell line
inferred← citeshttps://doi.org/10.1186/s12859-020-03855-1openalex-snapshot
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes
inferred← citeshttps://doi.org/10.1186/s12864-024-10960-5openalex-snapshot
LCRAnnotationsDB: a database of low complexity regions functional and structural annotations
inferred← citeshttps://doi.org/10.1186/s13059-021-02369-0openalex-snapshot
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
inferred← citeshttps://doi.org/10.1186/s13321-021-00515-1openalex-snapshot
IDSM ChemWebRDF: SPARQLing small-molecule datasets
inferred← citeshttps://doi.org/10.1186/s13321-023-00729-5openalex-snapshot
A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL
inferred← citeshttps://doi.org/10.1186/s13321-024-00833-0openalex-snapshot
From papers to RDF-based integration of physicochemical data and adverse outcome pathways for nanomaterials
inferred← citeshttps://doi.org/10.1186/s40168-022-01260-9openalex-snapshot
Human endogenous retrovirus K in the respiratory tract is associated with COVID-19 physiopathology
inferred← citeshttps://doi.org/10.1186/s40510-021-00364-6openalex-snapshot
Identification of bone morphogenetic protein 4 in the saliva after the placement of fixed orthodontic appliance
inferred← citeshttps://doi.org/10.1212/nxg.0000000000000568openalex-snapshot
Expanding the Genotypic Spectrum of Congenital Sensory and Autonomic Neuropathies Using Whole-Exome Sequencing
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1014616openalex-snapshot
CLASPP: A unified model for predicting post-translational modifications
inferred← citeshttps://doi.org/10.18097/pbmc20247001061openalex-snapshot
Identification of protein components of the transformation system in the cell line of immortalized human keratinocytes HaCaT exposed to surfactants
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2877610/v1openalex-snapshot
Identification of biomarkers for breast cancer early diagnosis based on the molecular classification using machine learning algorithms on transcriptomic data and factorial designs for analysis
inferred← citeshttps://doi.org/10.21203/rs.3.rs-514541/v1openalex-snapshot
Human endogenous retrovirus K activation in the lower respiratory tract of severe COVID-19 patients associates with early mortality
inferred← citeshttps://doi.org/10.21203/rs.3.rs-817686/v1openalex-snapshot
MYCL promotes iPSC-like colony formation via MYC Box 0 and 2 domains
inferred← citeshttps://doi.org/10.21203/rs.3.rs-962774/v1openalex-snapshot
Balanced Reciprocal Translocation t(17;22)(p11.2;q11.2) and 10q23.31 Microduplication in a Infertility Male Suffering from Teratospermia
inferred← citeshttps://doi.org/10.21307/ane-2021-008openalex-snapshot
Putative mechanism of neurological damage in COVID-19 infection
inferred← citeshttps://doi.org/10.2147/ijn.s381483openalex-snapshot
Everolimus-Loaded Reconstituted High-Density Lipoprotein Prepared by a Novel Dual Centrifugation Approach for Anti-Atherosclerotic Therapy
inferred← citeshttps://doi.org/10.2174/1389203723666220526092941openalex-snapshot
Number of Detected Proteins as the Function of the Sensitivity of Proteomic Technology in Human Liver Cells
inferred← citeshttps://doi.org/10.26434/chemrxiv-2023-b3m9bopenalex-snapshot
Same Day Access to Proteins Enabled by Folding Selections
inferred← citeshttps://doi.org/10.26434/chemrxiv.13524191openalex-snapshot
Providing Adverse Outcome Pathways from the AOP-Wiki in Semantic Web Format to Increase Usability and Accessibility of the Content
inferred← citeshttps://doi.org/10.29228/jrp.286openalex-snapshot
A comprehensive database analysis of post-translational modifications with chemical and functional categories. A throughout PTM study of 2022 databases
inferred← citeshttps://doi.org/10.31557/apjcb.2022.7.3.275-283openalex-snapshot
Accelerating Breast Cancer Biomarker Discovery by Mass Spectrometry Proteomics and Current Bioinformatics Tools
inferred← citeshttps://doi.org/10.3233/shti220603openalex-snapshot
Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service
inferred← citeshttps://doi.org/10.33540/1535openalex-snapshot
Probing highly polymorphic proteins by mass spectrometry
inferred← citeshttps://doi.org/10.33540/2077openalex-snapshot
From Monomers to Condensates: Golgi-Associated plant Pathogenesis Related protein 1 (GAPR-1) Oligomerization in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.3389/ebm.2025.10308openalex-snapshot
Functional mass spectrometry indicates anti-protease and complement activity increase with COVID-19 severity
inferred← citeshttps://doi.org/10.3389/fbinf.2025.1576317openalex-snapshot
Protein cleaver: an interactive web interface for in silico prediction and systematic annotation of protein digestion-derived peptides
inferred← citeshttps://doi.org/10.3389/fcell.2021.660626openalex-snapshot
Proteostasis in the Male and Female Germline: A New Outlook on the Maintenance of Reproductive Health
inferred← citeshttps://doi.org/10.3389/fgene.2021.674534openalex-snapshot
Genome of the Single Human Chromosome 18 as a “Gold Standard” for Its Transcriptome
inferred← citeshttps://doi.org/10.3389/fgene.2022.797813openalex-snapshot
Case Report: Balanced Reciprocal Translocation t (17; 22) (p11.2; q11.2) and 10q23.31 Microduplication in an Infertile Male Patient Suffering From Teratozoospermia
inferred← citeshttps://doi.org/10.3389/fimmu.2024.1462174openalex-snapshot
AKR1B10 and digestive tumors development: a review
inferred← citeshttps://doi.org/10.3389/fonc.2021.606820openalex-snapshot
Interpreting Sequence Variation in PDAC-Predisposing Genes Using a Multi-Tier Annotation Approach Performed at the Gene, Patient, and Cohort Level
inferred← citeshttps://doi.org/10.3389/fonc.2021.788809openalex-snapshot
Case Report: Combination of Olaparib With Chemotherapy in a Patient With ATM-Deficient Colorectal Cancer
inferred← citeshttps://doi.org/10.3389/fonc.2022.849640openalex-snapshot
A Community-Driven, Openly Accessible Molecular Pathway Integrating Knowledge on Malignant Pleural Mesothelioma
inferred← citeshttps://doi.org/10.3389/fragi.2025.1707720openalex-snapshot
RNA transcripts in salivary extracellular vesicle cargo isolated from aged populations
inferred← citeshttps://doi.org/10.3390/biomedicines10010162openalex-snapshot
Recent Developments in Clinical Plasma Proteomics—Applied to Cardiovascular Research
inferred← citeshttps://doi.org/10.3390/cancers15030891openalex-snapshot
Systematic Evaluation of Antigenic Stimulation in Chronic Lymphocytic Leukemia: Humoral Immunity as Biomarkers for Disease Evolution
inferred← citeshttps://doi.org/10.3390/cells11081256openalex-snapshot
Proteomics and Metabolomics Profiling of Platelets and Plasma Mediators of Thrombo-Inflammation in Gestational Hypertension and Preeclampsia
inferred← citeshttps://doi.org/10.3390/cimb45040223openalex-snapshot
Identification of Potential Therapeutic Targets on the Level of DNA/mRNAs, Proteins and Metabolites: A Systematic Mapping Review of Scientific Texts’ Fragments from Open Targets
inferred← citeshttps://doi.org/10.3390/ijms22010038openalex-snapshot
Amniotic Fluid Stem Cell-Derived Extracellular Vesicles Counteract Steroid-Induced Osteoporosis In Vitro
inferred← citeshttps://doi.org/10.3390/ijms23041997openalex-snapshot
Interferon-β Activity Is Affected by S100B Protein
inferred← citeshttps://doi.org/10.3390/ijms24108524openalex-snapshot
Quantitative Aspects of the Human Cell Proteome
inferred← citeshttps://doi.org/10.3390/ijms25021004openalex-snapshot
Inherited Retinal Degeneration Caused by Dehydrodolichyl Diphosphate Synthase Mutation–Effect of an ALG6 Modifier Variant
inferred← citeshttps://doi.org/10.3390/ijms25021183openalex-snapshot
SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat Proteoforms
inferred← citeshttps://doi.org/10.3390/ijms26083667openalex-snapshot
Association of MTNR1B Gene Polymorphisms with Body Mass Index in Hashimoto’s Thyroiditis
inferred← citeshttps://doi.org/10.3390/insects13080669openalex-snapshot
Global Profiling of Genes Expressed in the Silk Glands of Philippine-Reared Mulberry Silkworms (Bombyx mori)
inferred← citeshttps://doi.org/10.3390/jpm12030479openalex-snapshot
Evolution of Protein Functional Annotation: Text Mining Study
inferred← citeshttps://doi.org/10.3390/microorganisms8060820openalex-snapshot
Mass Spectrometry-Based Characterization of the Virion Proteome, Phosphoproteome, and Associated Kinase Activity of Human Cytomegalovirus
inferred← citeshttps://doi.org/10.3390/toxics11121014openalex-snapshot
Methylomic, Proteomic, and Metabolomic Correlates of Traffic-Related Air Pollution in the Context of Cardiorespiratory Health: A Systematic Review, Pathway Analysis, and Network Analysis
inferred← citeshttps://doi.org/10.37609/akya.2621openalex-snapshot
Proteinlerin Posttranslasyonel Modifikasyonları
inferred← citeshttps://doi.org/10.6084/m9.figshare.14570572openalex-snapshot
Additional file 11 of Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
inferred← citeshttps://doi.org/10.6084/m9.figshare.14570575openalex-snapshot
Additional file 1 of Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
showing the first 199 of 215 · page through all 215
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.