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A Total-Evidence Dated Phylogeny of Echinoidea Combining Phylogenomic and Paleontological Data
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Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/spp2.1280openalex-snapshot
Phylogenetic analysis of the Archaeocidaridae and Palaeozoic Miocidaridae (Echinodermata, Echinoidea) and the origin of crown group echinoids
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Linking Species and Ecosystems: Organisms as Ecosystem Engineers
inferredcites →https://doi.org/10.1007/978-1-4757-0740-3_11openalex-snapshot
Sediment-Mediated Biological Disturbance and the Evolution of Marine Benthos
inferredcites →https://doi.org/10.1007/bf00395636openalex-snapshot
General ecology of the cassiduloid urchin Cassidulus caribbearum
inferredcites →https://doi.org/10.1007/s13127-019-00397-0openalex-snapshot
The phylogenomic revolution and its conceptual innovations: a text mining approach
inferredcites →https://doi.org/10.1016/0022-0981(91)90165-sopenalex-snapshot
The role of sea urchin grazing in regulating subtropical seagrass meadows: evidence from field manipulations in the northern Gulf of Mexico
inferredcites →https://doi.org/10.1016/0025-5564(81)90043-2openalex-snapshot
Comparison of phylogenetic trees
inferredcites →https://doi.org/10.1016/b978-0-12-396491-5.00001-0openalex-snapshot
Phylogeny of Sea Urchins
inferredcites →https://doi.org/10.1016/b978-0-12-396491-5.00014-9openalex-snapshot
Sea Urchins as Drivers of Shallow Benthic Marine Community Structure
inferredcites →https://doi.org/10.1016/b978-0-12-819570-3.00001-9openalex-snapshot
Phylogeny and classification of echinoids
inferredcites →https://doi.org/10.1016/j.crpv.2005.02.006openalex-snapshot
Early Triassic recovery of echinoderms
inferredcites →https://doi.org/10.1016/j.cub.2015.07.009openalex-snapshot
Morphological Phylogenetics in the Genomic Age
inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot
Phylogenomics: the beginning of incongruence?
inferredcites →https://doi.org/10.1016/j.tig.2015.08.001openalex-snapshot
Dating Tips for Divergence-Time Estimation
inferredcites →https://doi.org/10.1016/j.tree.2010.05.002openalex-snapshot
Diversity dynamics: molecular phylogenies need the fossil record
inferredcites →https://doi.org/10.1016/j.tree.2015.04.016openalex-snapshot
Post-molecular systematics and the future of phylogenetics
inferredcites →https://doi.org/10.1016/j.ygeno.2019.10.007openalex-snapshot
The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida)
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Deep metazoan phylogeny: When different genes tell different stories
inferredcites →https://doi.org/10.1016/j.ympev.2013.09.011openalex-snapshot
BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions
inferredcites →https://doi.org/10.1016/j.ympev.2014.10.011openalex-snapshot
An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2016.04.022openalex-snapshot
Biases of tree-independent-character-subsampling methods
inferredcites →https://doi.org/10.1016/j.ympev.2017.02.014openalex-snapshot
Molecular phylogeny of extant Holothuroidea (Echinodermata)
inferredcites →https://doi.org/10.1017/jpa.2016.46openalex-snapshot
Facies distribution and taphonomy of echinoids from the Fort Payne Formation (late Osagean, early Viséan, Mississippian) of Kentucky
inferredcites →https://doi.org/10.1017/s0016756800106600openalex-snapshot
Morphological Studies on the Echinoidea Holectypoida and their Allies
inferredcites →https://doi.org/10.1017/s0016756800201842openalex-snapshot
II.—Morphological Studies on the Echinoidea Holectypoida and their Allies
inferredcites →https://doi.org/10.1017/s0022336000061321openalex-snapshot
Evolutionary Trends and Their Functional Significance in the Post-Paleozoic Echinoids
inferredcites →https://doi.org/10.1017/s0094837300009714openalex-snapshot
Paedomorphosis, Aristotle's lantern, and the origin of the sand dollars (Echinodermata: Clypeasteroida)
inferredcites →https://doi.org/10.1017/s0376892902000322openalex-snapshot
Kelp forest ecosystems: biodiversity, stability, resilience and future
inferredcites →https://doi.org/10.1017/s1089332600000322openalex-snapshot
Echinoderm phylogeny: how congruent are morphological and molecular estimates?
inferredcites →https://doi.org/10.1017/s1359465600001039openalex-snapshot
On Echinothuria Floris, a New and Anomalous Echinoderm from the Chalk of Kent
inferredcites →https://doi.org/10.1017/s147720190600201xopenalex-snapshot
Phylogeny of the Jurassic to Early Cretaceous ‘Disasteroid’ Echinoids (Echinoidea; Echinodermata) and the origins of Spatangoids and Holasteroids
inferredcites →https://doi.org/10.1038/44766openalex-snapshot
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inferredcites →https://doi.org/10.1038/nature03042openalex-snapshot
Bioturbators enhance ecosystem function through complex biogeochemical interactions
inferredcites →https://doi.org/10.1038/nature12130openalex-snapshot
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inferredcites →https://doi.org/10.1038/nature13685openalex-snapshot
Comparative population genomics in animals uncovers the determinants of genetic diversity
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41598-018-37255-6openalex-snapshot
Molecular mechanisms underpinning transgenerational plasticity in the green sea urchin Psammechinus miliaris
inferredcites →https://doi.org/10.1038/srep15541openalex-snapshot
Reorganization of sea urchin gene regulatory networks at least 268 million years ago as revealed by oldest fossil cidaroid echinoid
inferredcites →https://doi.org/10.1038/srep36516openalex-snapshot
Functional insights into the testis transcriptome of the edible sea urchin Loxechinus albus
inferredcites →https://doi.org/10.1073/pnas.071524598openalex-snapshot
Recovery of Diadema antillarum reduces macroalgal cover and increases abundance of juvenile corals on a Caribbean reef
inferredcites →https://doi.org/10.1073/pnas.1319091111openalex-snapshot
The fossilized birth–death process for coherent calibration of divergence-time estimates
inferredcites →https://doi.org/10.1073/pnas.1418153112openalex-snapshot
Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution
inferredcites →https://doi.org/10.1073/pnas.1503453112openalex-snapshot
Error, signal, and the placement of Ctenophora sister to all other animals
inferredcites →https://doi.org/10.1073/pnas.1610603114openalex-snapshot
Paleogenomics of echinoids reveals an ancient origin for the double-negative specification of micromeres in sea urchins
inferredcites →https://doi.org/10.1080/106351501753462876openalex-snapshot
A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1080/14772011003603556openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btq378openalex-snapshot
is-rSNP: a novel technique forin silicoregulatory SNP detection
inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot
phangorn: phylogenetic analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/bty633openalex-snapshot
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
inferredcites →https://doi.org/10.1093/bioinformatics/bty839openalex-snapshot
ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
inferredcites →https://doi.org/10.1093/bioinformatics/btz305openalex-snapshot
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
inferredcites →https://doi.org/10.1093/database/bax074openalex-snapshot
Echinobase: an expanding resource for echinoderm genomic information
inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
inferredcites →https://doi.org/10.1093/molbev/msh194openalex-snapshot
Comparison of Site-Specific Rate-Inference Methods for Protein Sequences: Empirical Bayesian Methods Are Superior
inferredcites →https://doi.org/10.1093/molbev/msl039openalex-snapshot
Testing the Molecular Clock: Molecular and Paleontological Estimates of Divergence Times in the Echinoidea (Echinodermata)
inferredcites →https://doi.org/10.1093/molbev/msq097openalex-snapshot
Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships
inferredcites →https://doi.org/10.1093/molbev/msu143openalex-snapshot
Platyzoan Paraphyly Based on Phylogenomic Data Supports a Noncoelomate Ancestry of Spiralia
inferredcites →https://doi.org/10.1093/molbev/msu235openalex-snapshot
Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/msw279openalex-snapshot
RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/molbev/msz189openalex-snapshot
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/sysbio/syaa023openalex-snapshot
Death is on Our Side: Paleontological Data Drastically Modify Phylogenetic Hypotheses
inferredcites →https://doi.org/10.1093/sysbio/syq048openalex-snapshot
Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa
inferredcites →https://doi.org/10.1093/sysbio/syr064openalex-snapshot
A Method for Inferring the Rate of Evolution of Homologous Characters that Can Potentially Improve Phylogenetic Inference, Resolve Deep Divergence and Correct Systematic Biases
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syv041openalex-snapshot
Can We Identify Genes with Increased Phylogenetic Reliability?
inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
inferredcites →https://doi.org/10.1093/sysbio/syw041openalex-snapshot
Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction
inferredcites →https://doi.org/10.1093/sysbio/syw060openalex-snapshot
Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins
inferredcites →https://doi.org/10.1093/sysbio/syw079openalex-snapshot
Phylogenomics of Lophotrochozoa with Consideration of Systematic Error
inferredcites →https://doi.org/10.1093/sysbio/syw107openalex-snapshot
Bayesian Morphological Clock Methods Resurrect Placoderm Monophyly and Reveal Rapid Early Evolution in Jawed Vertebrates
inferredcites →https://doi.org/10.1093/sysbio/syx068openalex-snapshot
Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation
inferredcites →https://doi.org/10.1093/sysbio/syx077openalex-snapshot
To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1093/zoolinnean/zlz060openalex-snapshot
Homoplasy and extinction: the phylogeny of cassidulid echinoids (Echinodermata)
inferredcites →https://doi.org/10.1098/rsbl.2015.0975openalex-snapshot
Tips and nodes are complementary not competing approaches to the calibration of molecular clocks
inferredcites →https://doi.org/10.1098/rsbl.2016.0328openalex-snapshot
Inferring node dates from tip dates in fossil Canidae: the importance of tree priors
inferredcites →https://doi.org/10.1098/rsif.2018.0164openalex-snapshot
Structural stress response of segmented natural shells: a numerical case study on the clypeasteroid echinoidEchinocyamus pusillus
inferredcites →https://doi.org/10.1098/rsos.171548openalex-snapshot
A new stem group echinoid from the Triassic of China leads to a revised macroevolutionary history of echinoids during the end-Permian mass extinction
inferredcites →https://doi.org/10.1098/rspb.2001.1806openalex-snapshot
Demographic history ofDiadema antillarum, a keystone herbivore on Caribbean reefs
inferredcites →https://doi.org/10.1098/rstb.1995.0023openalex-snapshot
A combined morphological and molecular phylogeny for sea urchins (Echinoidea: Echinodermata)
inferredcites →https://doi.org/10.1098/rstb.1995.0085openalex-snapshot
Comparing patterns of evolution: larval and adult life history stages and ribosomal RNA of post-Palaeozoic echinoids
inferredcites →https://doi.org/10.1098/rstb.2013.0269openalex-snapshot
Global regime shift dynamics of catastrophic sea urchin overgrazing
inferredcites →https://doi.org/10.1101/202416openalex-snapshot
Revising transcriptome assemblies with phylogenetic information in Agalma1.0
inferredcites →https://doi.org/10.1111/1755-0998.12500openalex-snapshot
Characterization of the transcriptome and gene expression of four different tissues in the ecologically relevant sea urchin Arbacia lixula using RNA ‐seq
inferredcites →https://doi.org/10.1111/2041-210x.12091openalex-snapshot
Unifying fossils and phylogenies for comparative analyses of diversification and trait evolution
inferredcites →https://doi.org/10.1111/cla.12160openalex-snapshot
TNT version 1.5, including a full implementation of phylogenetic morphometrics
inferredcites →https://doi.org/10.1111/j.1095-8312.1994.tb01001.xopenalex-snapshot
Cladistic analysis of cassiduloid echinoids: trying to see the phylogeny for the trees
inferredcites →https://doi.org/10.1111/j.1096-0031.1993.tb00209.xopenalex-snapshot
ESTIMATING CHARACTER WEIGHTS DURING TREE SEARCH
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/pala.12392openalex-snapshot
The youngest ophiocistioid: a first Palaeozoic‐type echinoderm group representative from the Mesozoic
inferredcites →https://doi.org/10.1117/12.930832openalex-snapshot
Macro- and microstructural diversity of sea urchin teeth revealed by large-scale mircro-computed tomography survey
inferredcites →https://doi.org/10.1126/science.1156407openalex-snapshot
Massive Horizontal Gene Transfer in Bdelloid Rotifers
inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
inferredcites →https://doi.org/10.1126/science.265.5178.1547openalex-snapshot
Catastrophes, Phase Shifts, and Large-Scale Degradation of a Caribbean Coral Reef
inferredcites →https://doi.org/10.1130/g38909.1openalex-snapshot
Paleozoic echinoderm hangovers: Waking up in the Triassic
inferredcites →https://doi.org/10.1144/gsl.jgs.1897.053.01-04.09openalex-snapshot
On the Affinities of the Echinothuridæ; and on Pedinothuria and Helikodiadema, two new Genera of Echinoidea
inferredcites →https://doi.org/10.1144/pygs.48.1.47openalex-snapshot
Tooth structure and phylogeny of the Upper Permian echinoidMiocidaris keyserlingi
inferredcites →https://doi.org/10.1186/1471-2105-14-330openalex-snapshot
Agalma: an automated phylogenomics workflow
inferredcites →https://doi.org/10.1186/1471-2105-7-88openalex-snapshot
SIMMAP: Stochastic character mapping of discrete traits on phylogenies
inferredcites →https://doi.org/10.1186/s12859-015-0864-xopenalex-snapshot
ChainRank, a chain prioritisation method for contextualisation of biological networks
inferredcites →https://doi.org/10.1186/s12859-016-0883-2openalex-snapshot
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-017-1090-0openalex-snapshot
Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)
inferredcites →https://doi.org/10.1186/s12862-018-1300-4openalex-snapshot
A phylogenomic resolution of the sea urchin tree of life
inferredcites →https://doi.org/10.1186/s12862-019-1350-2openalex-snapshot
Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences
inferredcites →https://doi.org/10.1186/s12864-018-4620-2openalex-snapshot
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees
inferredcites →https://doi.org/10.1186/s12915-018-0486-7openalex-snapshot
A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.pone.0066245openalex-snapshot
A Simple Method for Estimating Informative Node Age Priors for the Fossil Calibration of Molecular Divergence Time Analyses
inferredcites →https://doi.org/10.1371/journal.pone.0119627openalex-snapshot
Phylogenomic Analyses of Echinodermata Support the Sister Groups of Asterozoa and Echinozoa
inferredcites →https://doi.org/10.1371/journal.pone.0197433openalex-snapshot
So many genes, so little time: A practical approach to divergence-time estimation in the genomic era
inferredcites →https://doi.org/10.1371/journal.pone.0202729openalex-snapshot
Noise and biases in genomic data may underlie radically different hypotheses for the position of Iguania within Squamata
inferredcites →https://doi.org/10.1371/journal.pone.0212942openalex-snapshot
Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix
inferredcites →https://doi.org/10.1643/ch-14-015openalex-snapshot
Forked Tongues Revisited: Molecular Apomorphies Support Morphological Hypotheses of Squamate Evolution
inferredcites →https://doi.org/10.1666/0094-8373(2001)027<0392:ptcooc>2.0.co;2openalex-snapshot
Probing the cassiduloid origins of clypeasteroid echinoids using stratigraphically restricted parsimony analysis
inferredcites →https://doi.org/10.1666/06073.1openalex-snapshot
Intrinsic versus extrinsic biases in the fossil record: contrasting the fossil record of echinoids in the Triassic and early Jurassic using sampling data, phylogenetic analysis, and molecular clocks
inferredcites →https://doi.org/10.32614/cran.package.adephyloopenalex-snapshot
adephylo: Exploratory Analyses for the Phylogenetic Comparative Method
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.5281/zenodo.13473681openalex-snapshot
Living Cassiduloids (Echinodermata, Echinoidea) - A Key And Annotated List
inferredcites →https://doi.org/10.5281/zenodo.16046014openalex-snapshot
Implications of lantern morphology for the phylogeny of post-Palaeozoic echinoids
inferredcites →https://doi.org/10.5479/si.00810266.34.1openalex-snapshot
Index of Living and Fossil Echinoids 1924-1970
inferredcites →https://doi.org/10.5962/bhl.title.4630openalex-snapshot
Phylogeny of the Echini, with a revision of Palaeozoic species
inferredcites →https://doi.org/10.6084/m9.figshare.122openalex-snapshot
British Jurassic 'regular' echinoids
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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On the Tityus forcipula species group: redescription of Tityus forcipula (Scorpiones, Buthidae), description of a new Andean species, and notes on the taxonomy of the group
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Et latet et lucet: Discoveries from the Phyletisches Museum amber and copal collection in Jena, Germany
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Nutrition of Echinozoa
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An understudied phylum? Conservation consequences of the historic lack of echinoderm taxonomists
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Taphonomy and petrography of holectypoid-dominated muddy concretionary beds from the Hauterivian of Argentina: Insights into the basal life habit of irregular echinoids
inferred← citeshttps://doi.org/10.1016/j.cub.2023.09.043openalex-snapshot
A 50-million-year-old, three-dimensionally preserved bat skull supports an early origin for modern echolocation
inferred← citeshttps://doi.org/10.1016/j.geobios.2024.09.003openalex-snapshot
A spatangoid echinoid assemblage from the Gutingkeng Formation (Early Pleistocene) of Taiwan and its paleoenvironmental and geological implications
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EvoRator: Prediction of Residue-level Evolutionary Rates from Protein Structures Using Machine Learning
inferred← citeshttps://doi.org/10.1016/j.pocean.2025.103530openalex-snapshot
Deep-sea echinoderms (except holothurians) collected during the AleutBio expedition around the Bering Sea and the Aleutian Trench
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Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages
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Molecular Paleobiology of the Echinoderm Skeleton
inferred← citeshttps://doi.org/10.1017/jpa.2022.28openalex-snapshot
Drilling predation on spatangoid echinoids from the Miocene of Sardinia: a taphonomic and paleoecological perspective
inferred← citeshttps://doi.org/10.1038/s41598-023-36848-0openalex-snapshot
Phylogeny, ancestral ranges and reclassification of sand dollars
inferred← citeshttps://doi.org/10.1038/s41598-024-54208-4openalex-snapshot
Embracing the taxonomic and topological stability of phylogenomics
inferred← citeshttps://doi.org/10.1080/14772019.2023.2243268openalex-snapshot
Mesozoic stem-group zoroasterid sea stars imply a delayed radiation of the crown group and adaptation to the deep seas
inferred← citeshttps://doi.org/10.1080/14772019.2025.2472851openalex-snapshot
The Miocene deep-water echinoids Toxopatagus italicus and Neoholaster albensis gen. and sp. nov., implications for holasteroid phylogeny and palaeoecology
inferred← citeshttps://doi.org/10.1093/gbe/evac129openalex-snapshot
A Practical Guide to Design and Assess a Phylogenomic Study
inferred← citeshttps://doi.org/10.1093/iob/obad011openalex-snapshot
Syngnathoid Evolutionary History and the Conundrum of Fossil Misplacement
inferred← citeshttps://doi.org/10.1093/isd/ixae035openalex-snapshot
Phylogeny and evolution of larval feeding mode in the megadiverse superfamily Sciaroidea (Diptera)
inferred← citeshttps://doi.org/10.1093/molbev/msab151openalex-snapshot
Phylogenomic Subsampling and the Search for Phylogenetically Reliable Loci
inferred← citeshttps://doi.org/10.1093/molbev/msac021openalex-snapshot
Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida
inferred← citeshttps://doi.org/10.1093/sysbio/syad006openalex-snapshot
Handling Logical Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated and Empirical Data
inferred← citeshttps://doi.org/10.1093/sysbio/syad067openalex-snapshot
Fast Bayesian Inference of Phylogenies from Multiple Continuous Characters
inferred← citeshttps://doi.org/10.1093/sysbio/syae057openalex-snapshot
A Phylogenomic Backbone for Acoelomorpha Inferred From Transcriptomic Data
inferred← citeshttps://doi.org/10.1093/sysbio/syaf055openalex-snapshot
But the Clock, Tick-Tock: An Empirical Case Study Highlights the Preeminence of Relaxed Clock Models in Total-Evidence Dating
inferred← citeshttps://doi.org/10.1093/sysbio/syag009openalex-snapshot
The Dayhoff Exchange Score: A New Metric to Quantify Entropic Site Saturation in Amino Acid Data Sets Prior to Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1098/rsos.251924openalex-snapshot
Phylogenomics of extant Crinoidea (Echinodermata) reveals extensive morphological homoplasies and a Permian origin
inferred← citeshttps://doi.org/10.1098/rspb.2021.0044openalex-snapshot
Fossils improve phylogenetic analyses of morphological characters
inferred← citeshttps://doi.org/10.1098/rspb.2023.0988openalex-snapshot
Confusion will be my epitaph: genome-scale discordance stifles phylogenetic resolution of Holothuroidea
inferred← citeshttps://doi.org/10.1101/2022.08.25.505200openalex-snapshot
Inaccurate fossil placement does not compromise tip-dated divergence times
inferred← citeshttps://doi.org/10.1101/2024.05.06.592828openalex-snapshot
Predicting locus phylogenetic utility using machine learning
inferred← citeshttps://doi.org/10.1101/2025.02.28.640870openalex-snapshot
But the clock, tick-tock: the preeminence of relaxed clock models in total-evidence dated phylogenetics
inferred← citeshttps://doi.org/10.1101/2025.09.15.676180openalex-snapshot
A comparison of two universal angiosperm bait sets and the phylogenomics of Alismatales
inferred← citeshttps://doi.org/10.1101/2025.10.10.679534openalex-snapshot
Monoaminergic neurons share transcriptional identity across Bilaterian animals
inferred← citeshttps://doi.org/10.1111/1755-0998.13993openalex-snapshot
Next‐generation bioinformatics: An ultrafast and user‐friendly tool for phylogenomic data exploration
inferred← citeshttps://doi.org/10.1111/2041-210x.14404openalex-snapshot
Chronospaces: An R package for the statistical exploration of divergence times promotes the assessment of methodological sensitivity
inferred← citeshttps://doi.org/10.1111/brv.12908openalex-snapshot
Worms and gills, plates and spines: the evolutionary origins and incredible disparity of deuterostomes revealed by fossils, genes, and development
inferred← citeshttps://doi.org/10.1111/evo.14219openalex-snapshot
Exploring adaptive landscapes across deep time: A case study using echinoid body size
inferred← citeshttps://doi.org/10.1111/jbi.14259openalex-snapshot
Fossils constrain biogeographical history in a clade of flattened spiders with transcontinental distribution
inferred← citeshttps://doi.org/10.1111/pala.12680openalex-snapshot
Inaccurate fossil placement does not compromise tip‐dated divergence times
inferred← citeshttps://doi.org/10.1111/pala.70008openalex-snapshot
Taphonomic controls on a multi‐element marine skeletal fossil record
inferred← citeshttps://doi.org/10.1111/syen.12508openalex-snapshot
Phylogenomic analyses clarify the pattern of evolution of Adephaga (Coleoptera) and highlight phylogenetic artefacts due to model misspecification and excessive data trimming
inferred← citeshttps://doi.org/10.1111/syen.70000openalex-snapshot
Systematic and taxonomic revision of emerald and tigertail dragonflies (Anisoptera: Synthemistidae and Corduliidae)
inferred← citeshttps://doi.org/10.1111/syen.70041openalex-snapshot
Phylogenomics illuminates the complex evolutionary history of Bibionomorpha (Diptera)
inferred← citeshttps://doi.org/10.1130/abs/2022am-379676openalex-snapshot
INACCURATE FOSSIL PLACEMENT DOES NOT COMPROMISE TIP-DATED DIVERGENCE TIMES
inferred← citeshttps://doi.org/10.1186/s13227-021-00174-1openalex-snapshot
Post-metamorphic skeletal growth in the sea urchin Paracentrotus lividus and implications for body plan evolution
inferred← citeshttps://doi.org/10.12688/f1000research.139356.1openalex-snapshot
Scoutknife: A naïve, whole genome informed phylogenetic robusticity metric
inferred← citeshttps://doi.org/10.15517/rev.biol.trop..v72is1.59016openalex-snapshot
Analyzing morphometry among extant and extinct species: A case study of genus Agassizia (Spatangoida: Echinoidea)
inferred← citeshttps://doi.org/10.23860/diss-ada-eren-2023openalex-snapshot
Utilization of Large-Scale Genomic Data and Phylogenetic Methods in Studying Evolutionary Radiations
inferred← citeshttps://doi.org/10.31223/x5gq5wopenalex-snapshot
Taphonomic Controls on a Multi-Element Skeletal Fossil Record
inferred← citeshttps://doi.org/10.32942/osf.io/r23j8openalex-snapshot
Handling Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated Data
inferred← citeshttps://doi.org/10.32942/osf.io/vqejtopenalex-snapshot
Molecular Paleobiology of the Echinoderm Skeleton
inferred← citeshttps://doi.org/10.3319/tao.2021.10.01.01openalex-snapshot
Review of clypeasteroids phylogeny and a case study of Sinaechinocyamus mai (Taiwanasteridae)
inferred← citeshttps://doi.org/10.3319/tao.2021.12.21.01openalex-snapshot
Restudy of fossil specimens of Sinaechinocyamus (Echinoidea; Scutelloida) with new occurrences from Taiwan
inferred← citeshttps://doi.org/10.3319/tao.2021.12.29.01openalex-snapshot
Introduction to the special issue on New advances on stratigraphy and paleontology in Taiwan
inferred← citeshttps://doi.org/10.3389/fimmu.2021.744783openalex-snapshot
Sequence Diversity, Locus Structure, and Evolutionary History of the SpTransformer Genes in the Sea Urchin Genome
inferred← citeshttps://doi.org/10.3389/fmars.2023.1033710openalex-snapshot
New insights on the systematics of echinoids belonging to the family Spatangidae Gray, 1825 using a combined approach based on morphology, morphometry, and genetics
inferred← citeshttps://doi.org/10.3390/d13110568openalex-snapshot
What Is an “Arachnid”? Consensus, Consilience, and Confirmation Bias in the Phylogenetics of Chelicerata
inferred← citeshttps://doi.org/10.3897/asp.80.e86008openalex-snapshot
Revision of recluse spiders (Araneae: Sicariidae: Loxosceles) preserved in Dominican amber and a total-evidence phylogeny of Scytodoidea reveal the first fossil Drymusidae
inferred← citeshttps://doi.org/10.5710/amgh.01.03.2023.3536openalex-snapshot
New Species of the Genus Arbacia (Echinoidea, Arbaciidae) from the Neogene of Chile
inferred← citeshttps://doi.org/10.7554/elife.72460openalex-snapshot
Phylogenomic analyses of echinoid diversification prompt a re-evaluation of their fossil record
inferred← citeshttps://doi.org/10.7717/peerj.13730openalex-snapshot
Complete mitochondrial genomes of four deep-sea echinoids: conserved mitogenome organization and new insights into the phylogeny and evolution of Echinoidea
inferred← citeshttps://doi.org/10.7717/peerj.17178openalex-snapshot
Selective concentration of iron, titanium, and zirconium substrate minerals within Gregory’s diverticulum, an organ unique to derived sand dollars (Echinoidea: Scutelliformes)
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