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Revising transcriptome assemblies with phylogenetic information in Agalma1.0

https://doi.org/10.1101/202416

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.jtbi.2008.04.005openalex-snapshot

The conditioned reconstructed process

inferredcites →https://doi.org/10.1016/j.tree.2015.12.007openalex-snapshot

An Integrated Perspective on Phylogenetic Workflows

inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot

Full-length transcriptome assembly from RNA-Seq data without a reference genome

inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot

RNA-Seq: a revolutionary tool for transcriptomics

inferredcites →https://doi.org/10.1186/1471-2105-14-330openalex-snapshot

Agalma: an automated phylogenomics workflow

inferredcites →https://doi.org/10.1186/s13059-014-0553-5openalex-snapshot

Evaluation of de novo transcriptome assemblies from RNA-Seq data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.06.030openalex-snapshot

Improved phylogenetic resolution within Siphonophora (Cnidaria) with implications for trait evolution

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106892openalex-snapshot

More is needed—Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’ (Sabellida, Annelida)

inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107339openalex-snapshot

Phylogenomics resolves ambiguous relationships within Aciculata (Errantia, Annelida)

inferred← citeshttps://doi.org/10.1093/sysbio/syaa069openalex-snapshot

A Total-Evidence Dated Phylogeny of Echinoidea Combining Phylogenomic and Paleontological Data

inferred← citeshttps://doi.org/10.1101/2020.02.13.947796openalex-snapshot

A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body Size across Adaptive Landscape

inferred← citeshttps://doi.org/10.1186/s12862-018-1300-4openalex-snapshot

A phylogenomic resolution of the sea urchin tree of life

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