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When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

https://doi.org/10.1093/sysbio/syp081
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/0-387-27733-1_3openalex-snapshot
Introduction to Markov Chain Monte Carlo Methods in Molecular Evolution
inferredcites →https://doi.org/10.1007/978-1-4020-6754-9_12413openalex-snapshot
PAUP (phylogenetic analysis using parsimony)
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Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris)
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inferredcites →https://doi.org/10.1016/j.ympev.2008.03.015openalex-snapshot
Species limits and phylogeography of North American cricket frogs (Acris: Hylidae)
inferredcites →https://doi.org/10.1080/10635150590924208openalex-snapshot
Polytomies and Bayesian Phylogenetic Inference
inferredcites →https://doi.org/10.1080/10635150590945313openalex-snapshot
Branch-Length Prior Influences Bayesian Posterior Probability of Phylogeny
inferredcites →https://doi.org/10.1080/10635150601087641openalex-snapshot
Accurate Branch Length Estimation in Partitioned Bayesian Analyses Requires Accommodation of Among-Partition Rate Variation and Attention to Branch Length Priors
inferredcites →https://doi.org/10.1080/10635150701546249openalex-snapshot
The Importance of Data Partitioning and the Utility of Bayes Factors in Bayesian Phylogenetics
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/molbev/msm081openalex-snapshot
Fair-Balance Paradox, Star-tree Paradox, and Bayesian Phylogenetics
inferredcites →https://doi.org/10.1093/oso/9780198566106.003.0003openalex-snapshot
Bayesian Inference in molecular Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025892openalex-snapshot
Estimating the rate of evolution of the rate of molecular evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1093/sysbio/syp005openalex-snapshot
Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization
inferredcites →https://doi.org/10.1093/sysbio/syp080openalex-snapshot
Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees
inferredcites →https://doi.org/10.1098/rspa.1946.0056openalex-snapshot
An invariant form for the prior probability in estimation problems
inferredcites →https://doi.org/10.1098/rstb.2008.0164openalex-snapshot
Empirical evaluation of a prior for Bayesian phylogenetic inference
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Phylogeny, divergence times and species limits of spiny lizards (Sceloporus magisterspecies group) in western North American deserts and Baja California
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GEOLOGICAL AND CLIMATIC FORCES DRIVING SPECIATION IN THE CONTINENTALLY DISTRIBUTED TRILLING CHORUS FROGS (PSEUDACRIS)
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ALL-MALE ASEXUALITY: ORIGIN AND MAINTENANCE OF ANDROGENESIS IN THE ASIAN CLAM CORBICULA
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Bayesian Data Analysis

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inferred← citeshttps://doi.org/10.1071/sb12020openalex-snapshot
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Molecular Evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.002.0004openalex-snapshot
Foreword
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.002.0005openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0001openalex-snapshot
Models of nucleotide substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0002openalex-snapshot
Models of amino acid and codon substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0003openalex-snapshot
Phylogeny reconstruction: overview
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0004openalex-snapshot
Maximum likelihood methods
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0005openalex-snapshot
Comparison of phylogenetic methods and tests on trees
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0006openalex-snapshot
Bayesian theory
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0007openalex-snapshot
Bayesian computation (MCMC)
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0008openalex-snapshot
Bayesian phylogenetics
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0009openalex-snapshot
Coalescent theory and species trees
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0010openalex-snapshot
Molecular clock and estimation of species divergence times
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0011openalex-snapshot
Neutral and adaptive protein evolution
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Simulating molecular evolution
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Appendices
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Monnina (Polygalaceae), a New World monophyletic genus full of contrasts
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Employing Phylogenomics to Resolve the Relationships among Cnidarians, Ctenophores, Sponges, Placozoans, and Bilaterians
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The Last Piece of the Puzzle? Phylogenetic Position and Natural History of the Monotypic Fungus-Farming Ant GenusParamycetophylax(Formicidae: Attini)
inferred← citeshttps://doi.org/10.1093/jhered/esq092openalex-snapshot
Recent Trends in Molecular Phylogenetic Analysis: Where to Next?
inferred← citeshttps://doi.org/10.1093/molbev/msaa295openalex-snapshot
Properties of Markov Chain Monte Carlo Performance across Many Empirical Alignments
inferred← citeshttps://doi.org/10.1093/molbev/msr210openalex-snapshot
Tail Paradox, Partial Identifiability, and Influential Priors in Bayesian Branch Length Inference
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Phylogeny of the Sepia pharaonis species complex (Cephalopoda: Sepiida) based on analyses of mitochondrial and nuclear DNA sequence data
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inferred← citeshttps://doi.org/10.1093/sysbio/syac014openalex-snapshot
Comparing Likelihood Ratios to Understand Genome-Wide Variation in Phylogenetic Support
inferred← citeshttps://doi.org/10.1093/sysbio/syad041openalex-snapshot
Nucleotide Substitution Model Selection Is Not Necessary for Bayesian Inference of Phylogeny With Well-Behaved Priors
inferred← citeshttps://doi.org/10.1093/sysbio/syae033openalex-snapshot
The Fundamental Role of Character Coding in Bayesian Morphological Phylogenetics
inferred← citeshttps://doi.org/10.1093/sysbio/syag037openalex-snapshot
Biased Estimates of Phylogenetic Branch Lengths Resulting from the Discretised Gamma Model of Site Rate Heterogeneity
inferred← citeshttps://doi.org/10.1093/sysbio/syp005openalex-snapshot
Conflicting Mitochondrial and Nuclear Phylogenies for the Widely Disjunct Emys (Testudines: Emydidae) Species Complex, and What They Tell Us about Biogeography and Hybridization
inferred← citeshttps://doi.org/10.1093/sysbio/syp080openalex-snapshot
Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees
inferred← citeshttps://doi.org/10.1093/sysbio/syq092openalex-snapshot
Recent and Rapid Speciation with Limited Morphological Disparity in the Genus Rattus
inferred← citeshttps://doi.org/10.1093/sysbio/syr017openalex-snapshot
Hybridization, Mitochondrial DNA Phylogeography, and Prediction of the Early Stages of Reproductive Isolation: Lessons from New Zealand Cicadas (Genus Kikihia)
inferred← citeshttps://doi.org/10.1093/sysbio/syr019openalex-snapshot
Integrating Fossil Preservation Biases in the Selection of Calibrations for Molecular Divergence Time Estimation
inferred← citeshttps://doi.org/10.1093/sysbio/syr022openalex-snapshot
The Devil in the Details: Interactions between the Branch-Length Prior and Likelihood Model Affect Node Support and Branch Lengths in the Phylogeny of the Psoraceae
inferred← citeshttps://doi.org/10.1093/sysbio/syr094openalex-snapshot
Phylogeny Estimation of the Radiation of Western North American Chipmunks (Tamias) in the Face of Introgression Using Reproductive Protein Genes
inferred← citeshttps://doi.org/10.1093/sysbio/syr128openalex-snapshot
Is Recombination a Problem for Species-Tree Analyses?
inferred← citeshttps://doi.org/10.1093/sysbio/sys001openalex-snapshot
Overcoming Deep Roots, Fast Rates, and Short Internodes to Resolve the Ancient Rapid Radiation of Eupolypod II Ferns
inferred← citeshttps://doi.org/10.1093/sysbio/sys002openalex-snapshot
The Evolution of Defense Mechanisms Correlate with the Explosive Diversification of Autodigesting Coprinellus Mushrooms (Agaricales, Fungi)
inferred← citeshttps://doi.org/10.1093/sysbio/sys027openalex-snapshot
Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae)
inferred← citeshttps://doi.org/10.1093/sysbio/sys030openalex-snapshot
Robustness of Compound Dirichlet Priors for Bayesian Inference of Branch Lengths
inferred← citeshttps://doi.org/10.1093/sysbio/sys055openalex-snapshot
Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning
inferred← citeshttps://doi.org/10.1093/sysbio/syt008openalex-snapshot
Is Permanent Parasitism Reversible?—Critical Evidence from Early Evolution of House Dust Mites
inferred← citeshttps://doi.org/10.1093/sysbio/syt068openalex-snapshot
Posterior Predictive Bayesian Phylogenetic Model Selection
inferred← citeshttps://doi.org/10.1093/sysbio/syu002openalex-snapshot
Detection of Implausible Phylogenetic Inferences Using Posterior Predictive Assessment of Model Fit
inferred← citeshttps://doi.org/10.1093/sysbio/syu078openalex-snapshot
The Effects of Inference Method, Population Sampling, and Gene Sampling on Species Tree Inferences: An Empirical Study in Slender Salamanders (Plethodontidae: Batrachoseps)
inferred← citeshttps://doi.org/10.1093/sysbio/syu098openalex-snapshot
Among-Character Rate Variation Distributions in Phylogenetic Analysis of Discrete Morphological Characters
inferred← citeshttps://doi.org/10.1093/sysbio/syu132openalex-snapshot
Phycas: Software for Bayesian Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1093/sysbio/syv003openalex-snapshot
Deflating Trees: Improving Bayesian Branch-Length Estimates using Informed Priors
inferred← citeshttps://doi.org/10.1093/sysbio/syv069openalex-snapshot
Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini)
inferred← citeshttps://doi.org/10.1093/sysbio/syw016openalex-snapshot
Integrative Taxonomy Recognizes Evolutionary Units Despite Widespread Mitonuclear Discordance: Evidence from a Rotifer Cryptic Species Complex
inferred← citeshttps://doi.org/10.1093/sysbio/syw078openalex-snapshot
How the Aridification of Australia Structured the Biogeography and Influenced the Diversification of a Large Lineage of Australian Cicadas
inferred← citeshttps://doi.org/10.1093/sysbio/syw106openalex-snapshot
New Evidence from Linguistic Phylogenetics Identifies Limits to Punctuational Change
inferred← citeshttps://doi.org/10.1093/sysbio/syx037openalex-snapshot
Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models
inferred← citeshttps://doi.org/10.1093/sysbio/syy026openalex-snapshot
A Framework for Resolving Cryptic Species: A Case Study from the Lizards of the Australian Wet Tropics
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad041openalex-snapshot
Phylogeny of the microcormorants, with the description of a new genus
inferred← citeshttps://doi.org/10.1098/rsos.140375openalex-snapshot
Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae:Todiramphus)
inferred← citeshttps://doi.org/10.1098/rspb.2012.0744openalex-snapshot
Insect phylogenomics: results, problems and the impact of matrix composition
inferred← citeshttps://doi.org/10.1099/ijs.0.009514-0openalex-snapshot
Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae
inferred← citeshttps://doi.org/10.1099/jmm.0.034702-0openalex-snapshot
Molecular characterization reveals distinct genospecies of Anaplasma phagocytophilum from diverse North American hosts
inferred← citeshttps://doi.org/10.1101/2020.02.10.942367openalex-snapshot
Polynomial Phylogenetic Analysis of Tree Shapes
inferred← citeshttps://doi.org/10.1101/2022.02.17.480861openalex-snapshot
Bayesian inference of phylogeny is robust to substitution model over-parameterization
inferred← citeshttps://doi.org/10.1101/2024.06.26.600858openalex-snapshot
Modeling of Rate Heterogeneity in Datasets Compiled for Use With Parsimony
inferred← citeshttps://doi.org/10.1101/2024.09.19.614018openalex-snapshot
Trait-dependent biogeography offers insights on the dispersal of Meiogyne (Annonaceae) across the Australasia-Pacific region
inferred← citeshttps://doi.org/10.1101/2025.10.07.680876openalex-snapshot
A Systematic Investigation of Overfitting in Maximum Likelihood Phylogenetic Inference
inferred← citeshttps://doi.org/10.1101/732446openalex-snapshot
Utility of the Onchocerca volvulus mitochondrial genome for delineation of parasite transmission zones
inferred← citeshttps://doi.org/10.1109/tits.2020.2979390openalex-snapshot
Hierarchical Bayesian Framework for Bus Dwell Time Prediction
inferred← citeshttps://doi.org/10.1111/bij.12492openalex-snapshot
First steps in studying the origins of secondary woodiness inBegonia(Begoniaceae): combining anatomy, phylogenetics, and stem transcriptomics
inferred← citeshttps://doi.org/10.1111/boj.12251openalex-snapshot
Unmasking cryptic species: morphometric and phylogenetic analyses of the Ibero-North African Linaria incarnata complex
inferred← citeshttps://doi.org/10.1111/cla.12069openalex-snapshot
Phylogeny of the symphytan grade of Hymenoptera: new pieces into the old jigsaw(fly) puzzle
inferred← citeshttps://doi.org/10.1111/evo.12274openalex-snapshot
EVOLUTION OF PAEDOMORPHOSIS IN PLETHODONTID SALAMANDERS: ECOLOGICAL CORRELATES AND RE-EVOLUTION OF METAMORPHOSIS
inferred← citeshttps://doi.org/10.1111/ibi.12382openalex-snapshot
The phylogenetic relationships of Przevalski's FinchUrocynchramus pylzowi, the most ancient Tibetan endemic passerine known to date
inferred← citeshttps://doi.org/10.1111/j.1095-8312.2012.02009.xopenalex-snapshot
Comparative phylogenetic analysis reveals long-term isolation of lineages on the Three Kings Islands, New Zealand
inferred← citeshttps://doi.org/10.1111/j.1095-8339.2012.01322.xopenalex-snapshot
Phylogenetic position and delimitation of the moss family Plagiotheciaceae in the order Hypnales
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2012.00411.xopenalex-snapshot
Phylogenetic placement of pelican spiders (Archaeidae, Araneae), with insight into evolution of the “neck” and predatory behaviours of the superfamily Palpimanoidea
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2012.00866.xopenalex-snapshot
Molecular systematics and evolution of the subgenusMesocarabusThomson, 1875 (Coleoptera: Carabidae:Carabus), based on mitochondrial and nuclear DNA
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2010.00563.xopenalex-snapshot
Data partitioning in Bayesian analysis: molecular phylogenetics of metalmark moths (Lepidoptera: Choreutidae)
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2011.00591.xopenalex-snapshot
A molecular phylogeny for digger wasps in the tribe Ammophilini (Hymenoptera, Apoidea, Sphecidae)
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2012.00624.xopenalex-snapshot
Origin and diversification of the cryptic ant genus Stenamma Westwood (Hymenoptera: Formicidae), inferred from multilocus molecular data, biogeography and natural history
inferred← citeshttps://doi.org/10.1111/j.1420-9101.2011.02384.xopenalex-snapshot
Patterns of mammalian diversification in recent evolutionary times: global tendencies and methodological issues
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2012.00660.xopenalex-snapshot
Molecular phylogeny of African hinge-back tortoises (Kinixys): implications for phylogeography and taxonomy (Testudines: Testudinidae)
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2011.00486.xopenalex-snapshot
Phylogeny and character evolution in Grania (Annelida, Clitellata)
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2012.00532.xopenalex-snapshot
Molecular phylogeny, larval case architecture, host–plant associations and classification of European Coleophoridae (Lepidoptera)
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2012.00551.xopenalex-snapshot
Exploration of data partitioning in an eight‐gene data set: phylogeny of metalmark moths (Lepidoptera, Choreutidae)
inferred← citeshttps://doi.org/10.1111/jbi.12531openalex-snapshot
Unravelling the historical biogeography and diversification dynamics of a highly diverse conifer‐feeding aphid genus
inferred← citeshttps://doi.org/10.1111/jse.12064openalex-snapshot
Reassessing the taxonomic status of two enigmatic Desmos species ( A nnonaceae): Morphological and molecular phylogenetic support for a new genus, Wangia
inferred← citeshttps://doi.org/10.1111/jse.70017openalex-snapshot
Molecular phylogenetics and trait‐dependent biogeography offer insights on the dispersal of Meiogyne (Annonaceae) across the Australasia–Pacific region
inferred← citeshttps://doi.org/10.1111/jzs.12092openalex-snapshot
DNA-based phylogeny of the marine genus Heterodrilus (Annelida, Clitellata, Naididae)
inferred← citeshttps://doi.org/10.1111/jzs.12299openalex-snapshot
Sorting out the Snakebirds: The species status, phylogeny, and biogeography of the Darters (Aves: Anhingidae)
inferred← citeshttps://doi.org/10.1111/mec.12324openalex-snapshot
Multilocus phylogeny and B ayesian estimates of species boundaries reveal hidden evolutionary relationships and cryptic diversity in S outheast A sian monitor lizards
inferred← citeshttps://doi.org/10.1111/mec.13590openalex-snapshot
Assessing the performance of DNA barcoding using posterior predictive simulations
inferred← citeshttps://doi.org/10.1111/mec.13910openalex-snapshot
Buchnera has changed flatmate but the repeated replacement of co‐obligate symbionts is not associated with the ecological expansions of their aphid hosts
inferred← citeshttps://doi.org/10.1111/mec.17574openalex-snapshot
Population Genomics of Adaptive Radiation
inferred← citeshttps://doi.org/10.1111/syen.12090openalex-snapshot
The evolution of myrmicine ants: phylogeny and biogeography of a hyperdiverse ant clade ( H ymenoptera: F ormicidae)
inferred← citeshttps://doi.org/10.1111/syen.12115openalex-snapshot
A new extant family of primitive moths from K angaroo I sland, A ustralia, and its significance for understanding early L epidoptera evolution
inferred← citeshttps://doi.org/10.1111/syen.12162openalex-snapshot
Phylogenetic relationships of Acronictinae with discussion of the abdominal courtship brush in Noctuidae (Lepidoptera)
inferred← citeshttps://doi.org/10.1111/syen.12313openalex-snapshot
Phylogeny and evolution of the cryptic fungus‐farming ant genus Myrmicocrypta F. Smith (Hymenoptera: Formicidae) inferred from multilocus data
inferred← citeshttps://doi.org/10.1111/syen.12360openalex-snapshot
Out of Africa? A dated molecular phylogeny of the cicada tribe Platypleurini Schmidt (Hemiptera: Cicadidae), with a focus on African genera and the genus Platypleura Amyot & Audinet‐Serville
inferred← citeshttps://doi.org/10.1111/syen.12370openalex-snapshot
The molecular phylogenetics of Trachymyrmex Forel ants and their fungal cultivars provide insights into the origin and coevolutionary history of ‘higher‐attine’ ant agriculture
inferred← citeshttps://doi.org/10.1111/syen.12463openalex-snapshot
Phylogenomic species delimitation in the ants of the Temnothorax salvini group ( Hymenoptera: Formicidae ): an integrative approach
inferred← citeshttps://doi.org/10.1111/zsc.12002openalex-snapshot
Molecular phylogeny and systematics of Dipodoidea: a test of morphology‐based hypotheses
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102320-093722openalex-snapshot
Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles
inferred← citeshttps://doi.org/10.11646/zootaxa.3190.1.1openalex-snapshot
Morphological and molecular diversification of slender salamanders (Caudata: Plethodontidae: Batrachoseps) in the southern Sierra Nevada of California with descriptions of two new species
inferred← citeshttps://doi.org/10.11646/zootaxa.3431.1.1openalex-snapshot
Aipysurus mosaicus, a new species of egg-eating sea snake (Elapidae: Hydrophiinae), with a redescription of Aipysurus eydouxii (Gray, 1849)
inferred← citeshttps://doi.org/10.1179/1743282012y.0000000013openalex-snapshot
Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales
inferred← citeshttps://doi.org/10.1186/1471-2148-11-136openalex-snapshot
The role of historical and contemporary processes on phylogeographic structure and genetic diversity in the Northern Cardinal, Cardinalis cardinalis
inferred← citeshttps://doi.org/10.1186/1471-2148-11-37openalex-snapshot
Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae
inferred← citeshttps://doi.org/10.1186/1471-2148-12-177openalex-snapshot
Limited, episodic diversification and contrasting phylogeography in a New Zealand cicada radiation
inferred← citeshttps://doi.org/10.1186/1471-2148-12-40openalex-snapshot
Winding up the molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation
inferred← citeshttps://doi.org/10.1186/1471-2148-13-222openalex-snapshot
Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza
inferred← citeshttps://doi.org/10.1186/1471-2148-14-29openalex-snapshot
A phylogeny for the pomatiopsidae (Gastropoda: Rissooidea): a resource for taxonomic, parasitological and biodiversity studies
inferred← citeshttps://doi.org/10.1186/1756-3305-3-57openalex-snapshot
The phylogeography of Indoplanorbis exustus (Gastropoda: Planorbidae) in Asia
inferred← citeshttps://doi.org/10.1186/s12859-016-1132-4openalex-snapshot
EmpPrior: using outside empirical data to inform branch-length priors for Bayesian phylogenetics
inferred← citeshttps://doi.org/10.1186/s12862-015-0359-4openalex-snapshot
Oligocene niche shift, Miocene diversification – cold tolerance and accelerated speciation rates in the St. John’s Worts (Hypericum, Hypericaceae)
inferred← citeshttps://doi.org/10.1186/s12862-015-0376-3openalex-snapshot
Phylogeny and classification of the East Asian Amitostigma alliance (Orchidaceae: Orchideae) based on six DNA markers
inferred← citeshttps://doi.org/10.1186/s12862-015-0458-2openalex-snapshot
Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment
inferred← citeshttps://doi.org/10.1186/s12862-016-0822-xopenalex-snapshot
Multigene phylogenetic analysis redefines dung beetles relationships and classification (Coleoptera: Scarabaeidae: Scarabaeinae)
inferred← citeshttps://doi.org/10.12705/633.36openalex-snapshot
Systematics of the genus Geastrum (Fungi: Basidiomycota) revisited
inferred← citeshttps://doi.org/10.12705/651.8openalex-snapshot
Resolving the phylogenetic position of Ombrocharis (Lamiaceae), with reference to the molecular phylogeny of tribe Elsholtzieae
inferred← citeshttps://doi.org/10.12705/661.1openalex-snapshot
Cutting up the climbers: Evidence for extensive polyphyly in Friesodielsia (Annonaceae) necessitates generic realignment across the tribe Uvarieae
inferred← citeshttps://doi.org/10.12705/672.2openalex-snapshot
A new Annonaceae genus, Wuodendron , provides support for a post–boreotropical origin of the Asian–Neotropical disjunction in the tribe Miliuseae
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1012337openalex-snapshot
Reliable estimation of tree branch lengths using deep neural networks
inferred← citeshttps://doi.org/10.1371/journal.pntd.0007061openalex-snapshot
Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
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