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The role of animal hosts in shaping gut microbiome variation

https://doi.org/10.1098/rstb.2023.0071

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Characteristics of digestive processes in Atlantic salmon (Salmo salar). Enzyme pH optima, chyme pH, and enzyme activities

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Dual oxidase in the intestinal epithelium of zebrafish larvae has anti-bacterial properties

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Recognition of Commensal Microflora by Toll-Like Receptors Is Required for Intestinal Homeostasis

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Reciprocal Gut Microbiota Transplants from Zebrafish and Mice to Germ-free Recipients Reveal Host Habitat Selection

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Human Genetics Shape the Gut Microbiome

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Distinct Shifts in Microbiota Composition during Drosophila Aging Impair Intestinal Function and Drive Mortality

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Microbiome-derived acidity protects against microbial invasion in Drosophila

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IgA Response to Symbiotic Bacteria as a Mediator of Gut Homeostasis

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Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

inferredcites →https://doi.org/10.1016/j.chom.2015.01.015openalex-snapshot

Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque

inferredcites →https://doi.org/10.1016/j.chom.2015.04.004openalex-snapshot

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

inferredcites →https://doi.org/10.1016/j.chom.2016.01.008openalex-snapshot

Preventing Age-Related Decline of Gut Compartmentalization Limits Microbiota Dysbiosis and Extends Lifespan

inferredcites →https://doi.org/10.1016/j.chom.2016.04.017openalex-snapshot

Genetic Determinants of the Gut Microbiome in UK Twins

inferredcites →https://doi.org/10.1016/j.chom.2017.12.007openalex-snapshot

Cytosolic and Secreted Peptidoglycan-Degrading Enzymes in Drosophila Respectively Control Local and Systemic Immune Responses to Microbiota

inferredcites →https://doi.org/10.1016/j.chom.2018.06.001openalex-snapshot

Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis

inferredcites →https://doi.org/10.1016/j.chom.2018.06.007openalex-snapshot

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

inferredcites →https://doi.org/10.1016/j.chom.2019.08.011openalex-snapshot

Regional Diversity of the Gastrointestinal Microbiome

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Co-evolution and Co-speciation of Host-Gut Bacteria Systems

inferredcites →https://doi.org/10.1016/j.chom.2020.12.003openalex-snapshot

Immunoglobulin A Targets a Unique Subset of the Microbiota in Inflammatory Bowel Disease

inferredcites →https://doi.org/10.1016/j.chom.2022.01.002openalex-snapshot

Diet leaves a genetic signature in a keystone member of the gut microbiota

inferredcites →https://doi.org/10.1016/j.copbio.2017.01.008openalex-snapshot

C. elegans and its bacterial diet as a model for systems-level understanding of host–microbiota interactions

inferredcites →https://doi.org/10.1016/j.cub.2015.07.037openalex-snapshot

Toll-like Receptor Signaling Promotes Development and Function of Sensory Neurons Required for a C. elegans Pathogen-Avoidance Behavior

inferredcites →https://doi.org/10.1016/j.cub.2017.05.034openalex-snapshot

Probabilistic Invasion Underlies Natural Gut Microbiome Stability

inferredcites →https://doi.org/10.1016/j.cub.2020.04.070openalex-snapshot

Vast Differences in Strain-Level Diversity in the Gut Microbiota of Two Closely Related Honey Bee Species

inferredcites →https://doi.org/10.1016/j.cub.2021.04.046openalex-snapshot

Natural genetic variation drives microbiome selection in the Caenorhabditis elegans gut

inferredcites →https://doi.org/10.1016/j.cub.2023.05.062openalex-snapshot

Specialized acquisition behaviors maintain reliable environmental transmission in an insect-microbial mutualism

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Mucosal immunoglobulins and B cells of teleost fish

inferredcites →https://doi.org/10.1016/j.dci.2013.06.006openalex-snapshot

Peptidoglycan recognition proteins in Drosophila immunity

inferredcites →https://doi.org/10.1016/j.dci.2013.10.010openalex-snapshot

Molting-associated suppression of symbiont population and up-regulation of antimicrobial activity in the midgut symbiotic organ of the Riptortus–Burkholderia symbiosis

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Teleost NOD-like receptors and their downstream signaling pathways: A brief review

inferredcites →https://doi.org/10.1016/j.ijbiomac.2020.07.293openalex-snapshot

Structure of fish Toll-like receptors (TLR) and NOD-like receptors (NLR)

inferredcites →https://doi.org/10.1016/j.immuni.2011.09.018openalex-snapshot

Negative Regulation by Amidase PGRPs Shapes the Drosophila Antibacterial Response and Protects the Fly from Innocuous Infection

inferredcites →https://doi.org/10.1016/j.immuni.2016.10.029openalex-snapshot

PGRP-SD, an Extracellular Pattern-Recognition Receptor, Enhances Peptidoglycan-Mediated Activation of the Drosophila Imd Pathway

inferredcites →https://doi.org/10.1016/j.immuni.2018.01.007openalex-snapshot

Human T Cell Development, Localization, and Function throughout Life

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Evolution of innate and adaptive immunity: can we draw a line?

inferredcites →https://doi.org/10.1016/j.it.2014.07.008openalex-snapshot

Rethinking the role of immunity: lessons from Hydra

inferredcites →https://doi.org/10.1016/j.jinsphys.2008.06.008openalex-snapshot

Analysis of milk gland structure and function in Glossina morsitans: Milk protein production, symbiont populations and fecundity

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Monitoring and evaluation of free acidity levels in Talh honey originated from Talh tree Acacia gerrardii Benth

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Nox/Duox Family of NADPH Oxidases: Lessons from Knockout Mouse Models

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Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology

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Symbiotic organs: the nexus of host–microbe evolution

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The immune gene repertoire encoded in the purple sea urchin genome

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The Dorsoventral Regulatory Gene Cassette spätzle/Toll/cactus Controls the Potent Antifungal Response in Drosophila Adults

inferredcites →https://doi.org/10.1016/s0168-6496(03)00215-0openalex-snapshot

Vertical and horizontal transmission of intestinal commensal bacteria in the rat model

inferredcites →https://doi.org/10.1016/s1471-4906(02)02259-7openalex-snapshot

Of mice and men: species variations of Toll-like receptor expression

inferredcites →https://doi.org/10.1021/nn401856uopenalex-snapshot

Mapping the Pharyngeal and Intestinal pH of Caenorhabditis elegans and Real-Time Luminal pH Oscillations Using Extended Dynamic Range pH-Sensitive Nanosensors

inferredcites →https://doi.org/10.1038/emboj.2013.224openalex-snapshot

Symbiotic lactobacilli stimulate gut epithelial proliferation via Nox‐mediated generation of reactive oxygen species

inferredcites →https://doi.org/10.1038/ismej.2011.38openalex-snapshot

Evidence for a core gut microbiota in the zebrafish

inferredcites →https://doi.org/10.1038/ismej.2014.165openalex-snapshot

Host adaptive immunity alters gut microbiota

inferredcites →https://doi.org/10.1038/ismej.2015.140openalex-snapshot

The composition of the zebrafish intestinal microbial community varies across development

inferredcites →https://doi.org/10.1038/ismej.2015.142openalex-snapshot

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

inferredcites →https://doi.org/10.1038/ismej.2015.253openalex-snapshot

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

inferredcites →https://doi.org/10.1038/ismej.2015.64openalex-snapshot

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

inferredcites →https://doi.org/10.1038/nature07540openalex-snapshot

A core gut microbiome in obese and lean twins

inferredcites →https://doi.org/10.1038/nature08830openalex-snapshot

The dynamic genome of Hydra

inferredcites →https://doi.org/10.1038/nature11053openalex-snapshot

Human gut microbiome viewed across age and geography

inferredcites →https://doi.org/10.1038/nature12820openalex-snapshot

Diet rapidly and reproducibly alters the human gut microbiome

inferredcites →https://doi.org/10.1038/nature23292openalex-snapshot

The evolution of the host microbiome as an ecosystem on a leash

inferredcites →https://doi.org/10.1038/nature25973openalex-snapshot

Environment dominates over host genetics in shaping human gut microbiota

inferredcites →https://doi.org/10.1038/nbt.3353openalex-snapshot

A catalog of the mouse gut metagenome

inferredcites →https://doi.org/10.1038/ncomms11870openalex-snapshot

Diversity, structure and convergent evolution of the global sponge microbiome

inferredcites →https://doi.org/10.1038/ncomms13430openalex-snapshot

Microbe-mediated host defence drives the evolution of reduced pathogen virulence

inferredcites →https://doi.org/10.1038/ncomms14319openalex-snapshot

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

inferredcites →https://doi.org/10.1038/ncomms15172openalex-snapshot

Antibiotic-producing symbionts dynamically transition between plant pathogenicity and insect-defensive mutualism

inferredcites →https://doi.org/10.1038/ncomms15973openalex-snapshot

The evolution of host-symbiont dependence

inferredcites →https://doi.org/10.1038/ng.3663openalex-snapshot

The effect of host genetics on the gut microbiome

inferredcites →https://doi.org/10.1038/ng.3695openalex-snapshot

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota

inferredcites →https://doi.org/10.1038/ng2123openalex-snapshot

Diet and the evolution of human amylase gene copy number variation

inferredcites →https://doi.org/10.1038/ni.2635openalex-snapshot

Innate immune recognition of the microbiota promotes host-microbial symbiosis

inferredcites →https://doi.org/10.1038/ni.3213openalex-snapshot

Diversification of memory B cells drives the continuous adaptation of secretory antibodies to gut microbiota

inferredcites →https://doi.org/10.1038/nm.2505openalex-snapshot

Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut

inferredcites →https://doi.org/10.1038/nri1312openalex-snapshot

NOX enzymes and the biology of reactive oxygen

inferredcites →https://doi.org/10.1038/nrmicro.2016.43openalex-snapshot

Gut microbial communities of social bees

inferredcites →https://doi.org/10.1038/nrmicro1978openalex-snapshot

Worlds within worlds: evolution of the vertebrate gut microbiota

inferredcites →https://doi.org/10.1038/nrmicro2384openalex-snapshot

The role of secretory antibodies in infection immunity

inferredcites →https://doi.org/10.1038/nrmicro3074openalex-snapshot

Gut homeostasis in a microbial world: insights from Drosophila melanogaster

inferredcites →https://doi.org/10.1038/s41392-022-00974-4openalex-snapshot

Microbiota in health and diseases

inferredcites →https://doi.org/10.1038/s41396-020-0671-xopenalex-snapshot

Diverse coral reef invertebrates exhibit patterns of phylosymbiosis

inferredcites →https://doi.org/10.1038/s41396-021-00977-zopenalex-snapshot

Transitions in symbiosis: evidence for environmental acquisition and social transmission within a clade of heritable symbionts

inferredcites →https://doi.org/10.1038/s41422-020-0332-7openalex-snapshot

Interaction between microbiota and immunity in health and disease

inferredcites →https://doi.org/10.1038/s41437-022-00569-3openalex-snapshot

Immune-mediated competition benefits protective microbes over pathogens in a novel host species

inferredcites →https://doi.org/10.1038/s41467-018-07275-xopenalex-snapshot

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

inferredcites →https://doi.org/10.1038/s41467-018-07631-xopenalex-snapshot

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

inferredcites →https://doi.org/10.1038/s41467-019-08303-0openalex-snapshot

Genomic diversity landscape of the honey bee gut microbiota

inferredcites →https://doi.org/10.1038/s41467-019-09284-wopenalex-snapshot

Foliar-feeding insects acquire microbiomes from the soil rather than the host plant

inferredcites →https://doi.org/10.1038/s41467-019-12785-3openalex-snapshot

A mutualistic interaction between Streptomyces bacteria, strawberry plants and pollinating bees

inferredcites →https://doi.org/10.1038/s41467-019-13014-7openalex-snapshot

Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life

inferredcites →https://doi.org/10.1038/s41467-022-34557-2openalex-snapshot

Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species

inferredcites →https://doi.org/10.1038/s41467-023-36942-xopenalex-snapshot

A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota

inferredcites →https://doi.org/10.1038/s41559-020-1220-8openalex-snapshot

Microbial transmission in animal social networks and the social microbiome

inferredcites →https://doi.org/10.1038/s41564-023-01388-wopenalex-snapshot

Widespread extinctions of co-diversified primate gut bacterial symbionts from humans

inferredcites →https://doi.org/10.1038/s41579-021-00562-3openalex-snapshot

Host specificity of the gut microbiome

inferredcites →https://doi.org/10.1038/s41579-021-00604-wopenalex-snapshot

Priority effects in microbiome assembly

inferredcites →https://doi.org/10.1038/s41586-021-03973-7openalex-snapshot

Parallelism of intestinal secretory IgA shapes functional microbial fitness

inferredcites →https://doi.org/10.1038/s41586-022-05546-8openalex-snapshot

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

inferredcites →https://doi.org/10.1038/s41586-022-05620-1openalex-snapshot

The person-to-person transmission landscape of the gut and oral microbiomes

inferredcites →https://doi.org/10.1038/s41588-020-00747-1openalex-snapshot

Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome

inferredcites →https://doi.org/10.1038/s41588-021-00983-zopenalex-snapshot

Challenges and future directions for studying effects of host genetics on the gut microbiome

inferredcites →https://doi.org/10.1038/s41588-021-00991-zopenalex-snapshot

Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

inferredcites →https://doi.org/10.1038/s41598-019-48784-zopenalex-snapshot

Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice

inferredcites →https://doi.org/10.1038/s41598-022-18968-1openalex-snapshot

Reciprocating intestinal flows enhance glucose uptake in C. elegans

inferredcites →https://doi.org/10.1038/s41684-018-0065-0openalex-snapshot

The Drosophila model for microbiome research

inferredcites →https://doi.org/10.1038/s42003-021-02105-1openalex-snapshot

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

inferredcites →https://doi.org/10.1038/s43586-020-00011-0openalex-snapshot

Ancient DNA analysis

inferredcites →https://doi.org/10.1038/sj.icb.7100105openalex-snapshot

Mammalian NLR proteins; discriminating foe from friend

inferredcites →https://doi.org/10.1038/srep06185openalex-snapshot

Spatial heterogeneity of gut microbiota reveals multiple bacterial communities with distinct characteristics

inferredcites →https://doi.org/10.1038/srep06653openalex-snapshot

Zebrafish as a model to study live mucus physiology

inferredcites →https://doi.org/10.1038/srep24340openalex-snapshot

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

inferredcites →https://doi.org/10.1038/srep27242openalex-snapshot

Molecular mechanism and functional significance of acid generation in the Drosophila midgut

inferredcites →https://doi.org/10.1073/pnas.0307317101openalex-snapshot

Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut

inferredcites →https://doi.org/10.1073/pnas.0703375104openalex-snapshot

Long-term maintenance of species-specific bacterial microbiota in the basal metazoan Hydra

inferredcites →https://doi.org/10.1073/pnas.1006451107openalex-snapshot

The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host–microbial interactions

inferredcites →https://doi.org/10.1073/pnas.1007028107openalex-snapshot

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

inferredcites →https://doi.org/10.1073/pnas.1008573107openalex-snapshot

In an early branching metazoan, bacterial colonization of the embryo is controlled by maternal antimicrobial peptides

inferredcites →https://doi.org/10.1073/pnas.1119212109openalex-snapshot

Cellular mechanism for selective vertical transmission of an obligate insect symbiont at the bacteriocyte–embryo interface

inferredcites →https://doi.org/10.1073/pnas.1200231109openalex-snapshot

Symbiont-mediated insecticide resistance

inferredcites →https://doi.org/10.1073/pnas.1213110109openalex-snapshot

MyD88-deficient Hydra reveal an ancient function of TLR signaling in sensing bacterial colonizers

inferredcites →https://doi.org/10.1073/pnas.1304960110openalex-snapshot

Distinct antimicrobial peptide expression determines host species-specific bacterial associations

inferredcites →https://doi.org/10.1073/pnas.1504031112openalex-snapshot

Gut bacteria mediate aggregation in the German cockroach

inferredcites →https://doi.org/10.1073/pnas.1607183113openalex-snapshot

Caenorhabditis elegans responses to bacteria from its natural habitats

inferredcites →https://doi.org/10.1073/pnas.1701819114openalex-snapshot

Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling

inferredcites →https://doi.org/10.1073/pnas.1707186114openalex-snapshot

Caterpillars lack a resident gut microbiome

inferredcites →https://doi.org/10.1073/pnas.1804948115openalex-snapshot

Diet influences host–microbiota associations in Drosophila

inferredcites →https://doi.org/10.1073/pnas.1907787116openalex-snapshot

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

inferredcites →https://doi.org/10.1073/pnas.1908748116openalex-snapshot

Plant defenses interact with insect enteric bacteria by initiating a leaky gut syndrome

inferredcites →https://doi.org/10.1073/pnas.2021655118openalex-snapshot

The evolution and changing ecology of the African hominid oral microbiome

inferredcites →https://doi.org/10.1073/pnas.97.16.8856openalex-snapshot

The role of antimicrobial peptides in animal defenses

inferredcites →https://doi.org/10.1074/jbc.m105566200openalex-snapshot

Peptidoglycan Recognition Proteins

inferredcites →https://doi.org/10.1074/jbc.m804713200openalex-snapshot

Hydramacin-1, Structure and Antibacterial Activity of a Protein from the Basal Metazoan Hydra

inferredcites →https://doi.org/10.1080/00218839.2019.1584961openalex-snapshot

Ultramorphology of the peritrophic matrix in bees (Hymenoptera: Apidae)

inferredcites →https://doi.org/10.1080/19490976.2015.1031946openalex-snapshot

Control of commensal microbiota by the adaptive immune system

inferredcites →https://doi.org/10.1080/19490976.2016.1203502openalex-snapshot

Sex differences and hormonal effects on gut microbiota composition in mice

inferredcites →https://doi.org/10.1080/19490976.2023.2172671openalex-snapshot

Bile acids as modulators of gut microbiota composition and function

inferredcites →https://doi.org/10.1093/molbev/msac263openalex-snapshot

Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species

inferredcites →https://doi.org/10.1093/molbev/msw066openalex-snapshot

Searching the Evolutionary Origin of Epithelial Mucus Protein Components—Mucins and FCGBP

inferredcites →https://doi.org/10.1093/nutrit/nuaa029openalex-snapshot

The human milk microbiome: who, what, when, where, why, and how?

inferredcites →https://doi.org/10.1098/rsbl.2015.0840openalex-snapshot

Symbiont transmission entails the risk of parasite infection

inferredcites →https://doi.org/10.1098/rsob.160009openalex-snapshot

Structure and evolutionary history of a large family of NLR proteins in the zebrafish

inferredcites →https://doi.org/10.1098/rspb.2014.2957openalex-snapshot

An out-of-body experience: the extracellular dimension for the transmission of mutualistic bacteria in insects

inferredcites →https://doi.org/10.1098/rspb.2019.2900openalex-snapshot

An introduction to phylosymbiosis

inferredcites →https://doi.org/10.1098/rstb.2015.0299openalex-snapshot

Antimicrobial effectors in the nematode Caenorhabditis elegans : an outgroup to the Arthropoda

inferredcites →https://doi.org/10.1098/rstb.2019.0068openalex-snapshot

Links between metamorphosis and symbiosis in holometabolous insects

inferredcites →https://doi.org/10.1098/rstb.2019.0593openalex-snapshot

In the beginning: egg–microbe interactions and consequences for animal hosts

inferredcites →https://doi.org/10.1098/rstb.2019.0603openalex-snapshot

Housing microbial symbionts: evolutionary origins and diversification of symbiotic organs in animals

inferredcites →https://doi.org/10.1098/rstb.2023.0066openalex-snapshot

The importance of host physical niches for the stability of gut microbiome composition

inferredcites →https://doi.org/10.1101/2021.12.06.471348openalex-snapshot

Vertical transmission of tissue microbiota in Caenorhabditis elegans

inferredcites →https://doi.org/10.1111/1574-6976.12025openalex-snapshot

The gut microbiota of insects – diversity in structure and function

inferredcites →https://doi.org/10.1111/1751-7915.13323openalex-snapshot

Diet and diet‐associated bacteria shape early microbiome development in Yellowtail Kingfish ( Seriola lalandi )

inferredcites →https://doi.org/10.1111/1758-2229.12092openalex-snapshot

Restructuring of the amphibian gut microbiota through metamorphosis

inferredcites →https://doi.org/10.1111/een.12703openalex-snapshot

Transgenerational developmental effects of species‐specific, maternally transmitted microbiota in Onthophagus dung beetles

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Immune pathways and defence mechanisms in honey bees Apis mellifera

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How many symbionts are provided by mothers, acquired by offspring, and needed for successful vertical transmission in an obligate insect–bacterium mutualism?

inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02511.xopenalex-snapshot

Low‐diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

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Spiroplasma as a model insect endosymbiont

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Dynamic microbiome evolution in social bees

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Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine

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Diversity of the Human Intestinal Microbial Flora

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A Direct Role for Dual Oxidase in Drosophila Gut Immunity

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

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Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity

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Cospeciation of gut microbiota with hominids

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Ecology-relevant bacteria drive the evolution of host antimicrobial peptides in Drosophila

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Specific Developmental Window for Establishment of an Insect-Microbe Gut Symbiosis

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Changes in the Gut Microbiome of the Sea Lamprey during Metamorphosis

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Drosophila Antimicrobial Peptides and Lysozymes Regulate Gut Microbiota Composition and Abundance

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Frequent Replenishment Sustains the Beneficial Microbiome of Drosophila melanogaster

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Microbiota-Induced Changes in Drosophila melanogaster Host Gene Expression and Gut Morphology

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Dietary Utilization Drives the Differentiation of Gut Bacterial Communities between Specialist and Generalist Drosophilid Flies

showing the first 200 of 264 · page through all 264

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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