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Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups

https://doi.org/10.1099/mic.0.033977-0
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli : A comparative genomics approach
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Complete Genome Sequence of Enterohemorrhagic Eschelichia coli O157:H7 and Genomic Comparison with a Laboratory Strain K-12
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inferredcites →https://doi.org/10.1099/mic.0.2008/019026-0openalex-snapshot
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inferredcites →https://doi.org/10.1099/mic.0.28648-0openalex-snapshot
Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12
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Subtyping of uropathogenic Escherichia coli according to the pathogenicity island encoding uropathogenic‐specific protein: Comparison with phylogenetic groups
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Pathogenicity island markers in commensal and uropathogenic Escherichia coli isolates
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Rapid and Simple Determination of the Escherichia coli Phylogenetic Group
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inferredcites →https://doi.org/10.1128/cmr.11.1.142openalex-snapshot
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Pyelonephritogenic Escherichia coli and killing of cultured human renal proximal tubular epithelial cells: role of hemolysin in some strains
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Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen
inferredcites →https://doi.org/10.1128/iai.65.7.2685-2692.1997openalex-snapshot
Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies
inferredcites →https://doi.org/10.1128/iai.67.2.546-553.1999openalex-snapshot
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inferredcites →https://doi.org/10.1128/iai.68.4.2009-2015.2000openalex-snapshot
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inferredcites →https://doi.org/10.1128/iai.69.7.4572-4579.2001openalex-snapshot
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inferredcites →https://doi.org/10.1128/iai.70.6.3216-3226.2002openalex-snapshot
Phylogenetic Analysis and Prevalence of Urosepsis Strains of Escherichia coli Bearing Pathogenicity Island-Like Domains
inferredcites →https://doi.org/10.1128/iai.71.5.2775-2786.2003openalex-snapshot
Complete Genome Sequence and Comparative Genomics ofShigella flexneriSerotype 2a Strain 2457T
inferredcites →https://doi.org/10.1128/iai.73.7.4081-4087.2005openalex-snapshot
Multiple Insertional Events, Restricted by the Genetic Background, Have Led to Acquisition of Pathogenicity Island II J96 -Like Domains among Escherichia coli Strains of Different Clinical Origins
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The Pangenome Structure ofEscherichia coli: Comparative Genomic Analysis ofE. coliCommensal and Pathogenic Isolates
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The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse
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Genomic Islands of Uropathogenic Escherichia coli Contribute to Virulence
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The Genome Sequence of Avian PathogenicEscherichia coliStrain O1:K1:H7 Shares Strong Similarities with Human Extraintestinal PathogenicE. coliGenomes
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Defining Genomic Islands and Uropathogen-Specific Genes in Uropathogenic Escherichia coli
inferredcites →https://doi.org/10.1128/jb.154.3.1145-1152.1983openalex-snapshot
Spontaneous deletions and flanking regions of the chromosomally inherited hemolysin determinant of an Escherichia coli O6 strain
inferredcites →https://doi.org/10.1128/jb.157.2.690-693.1984openalex-snapshot
Standard reference strains of Escherichia coli from natural populations
inferredcites →https://doi.org/10.1128/jb.184.2.605-609.2002openalex-snapshot
High Frequency of Mutator Strains among Human Uropathogenic Escherichia coli Isolates
inferredcites →https://doi.org/10.1128/jb.186.22.7773-7782.2004openalex-snapshot
Single-Molecule Approach to Bacterial Genomic Comparisons via Optical Mapping
inferredcites →https://doi.org/10.1128/jcm.01488-07openalex-snapshot
Virulence Factors in Urinary Escherichia coli Strains: Phylogenetic Background and Quinolone and Fluoroquinolone Resistance
inferredcites →https://doi.org/10.1128/jcm.02070-06openalex-snapshot
Escherichia coli Isolates Associated with Uncomplicated and Complicated Cystitis and Asymptomatic Bacteriuria Possess Similar Phylogenies, Virulence Genes, and O-Serogroup Profiles
inferredcites →https://doi.org/10.1128/jcm.39.12.4549-4553.2001openalex-snapshot
Automated Ribotyping Provides Rapid Phylogenetic Subgroup Affiliation of Clinical Extraintestinal Pathogenic Escherichia coli Strains
inferredcites →https://doi.org/10.1128/jcm.42.9.4083-4091.2004openalex-snapshot
Development and Validation of a Diagnostic DNA Microarray To Detect Quinolone-Resistant Escherichia coli among Clinical Isolates
inferredcites →https://doi.org/10.1128/jcm.43.12.5860-5864.2005openalex-snapshot
Analysis of a Uropathogenic Escherichia coli Clonal Group by Multilocus Sequence Typing
inferredcites →https://doi.org/10.1186/1471-2164-7-173openalex-snapshot
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes
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OMTools: a software package for visualizing and processing optical mapping data
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Escherichia coli is poised to grow using 5′-deoxynucleosides via MtnR and CRP regulation of DHAP shunt gene expression
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Whole-Genome Mapping: a New Paradigm in Strain-Typing Technology
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Comparative Whole-Genome Mapping To Determine Staphylococcus aureus Genome Size, Virulence Motifs, and Clonality
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Escherichia coli possessing the dihydroxyacetone phosphate shunt utilize 5′-deoxynucleosides for growth
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Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology
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Virulence Potential and Genomic Mapping of the Worldwide Clone Escherichia coli ST131
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Enhanced De Novo Assembly of High Throughput Pyrosequencing Data Using Whole Genome Mapping
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Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains
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Noise reduction in single time frame optical DNA maps
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Applications of Optical DNA Mapping in Microbiology
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Molecular Subtyping of Shiga Toxin–Producing Escherichia coli Using a Commercial Repetitive Sequence–Based PCR Assay
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