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Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery

https://doi.org/10.1093/nar/gki954
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.tim.2004.09.002openalex-snapshot
Bacterial flagellins: mediators of pathogenicity and host immune responses in mucosa
inferredcites →https://doi.org/10.1016/s0167-7012(03)00094-0openalex-snapshot
GenomeComp: a visualization tool for microbial genome comparison
inferredcites →https://doi.org/10.1016/s0378-1097(99)00575-3openalex-snapshot
I-CeuI fragment analysis of the Shigella species: evidence for large-scale chromosome rearrangement in S. dysenteriae and S. flexneri
inferredcites →https://doi.org/10.1038/292640a0openalex-snapshot
Multiple copies of iso-insertion sequences of IS1 in Shigella dysenteriae chromosome
inferredcites →https://doi.org/10.1038/35054089openalex-snapshot
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
inferredcites →https://doi.org/10.1038/35059006openalex-snapshot
Massive gene decay in the leprosy bacillus
inferredcites →https://doi.org/10.1038/79918openalex-snapshot
Genome rearrangement by replication-directed translocation
inferredcites →https://doi.org/10.1038/ng1470openalex-snapshot
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid
inferredcites →https://doi.org/10.1038/nm0598supp-499openalex-snapshot
Slaying the Hydra all at once or head by head?
inferredcites →https://doi.org/10.1046/j.1365-2958.1998.00873.xopenalex-snapshot
Structure of the Shigella dysenteriae haem transport locus and its phylogenetic distribution in enteric bacteria
inferredcites →https://doi.org/10.1046/j.1365-2958.1999.01449.xopenalex-snapshot
The selC‐associated SHI‐2 pathogenicity island of Shigella flexneri
inferredcites →https://doi.org/10.1046/j.1365-2958.1999.01669.xopenalex-snapshot
Spontaneous tandem amplification and deletion of the Shiga toxin operon in Shigella dysenteriae 1
inferredcites →https://doi.org/10.1073/pnas.092152899openalex-snapshot
Identification of a protein secretory pathway for the secretion of heat-labile enterotoxin by an enterotoxigenic strain of Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.180094797openalex-snapshot
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
inferredcites →https://doi.org/10.1073/pnas.86.10.3867openalex-snapshot
Identification of icsA, a plasmid locus of Shigella flexneri that governs bacterial intra- and intercellular spread through interaction with F-actin.
inferredcites →https://doi.org/10.1073/pnas.95.7.3943openalex-snapshot
“Black holes” and bacterial pathogenicity: A large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coli
inferredcites →https://doi.org/10.1074/jbc.274.16.10936openalex-snapshot
Interactions of CcdB with DNA Gyrase
inferredcites →https://doi.org/10.1074/jbc.m101882200openalex-snapshot
Shigella Protein IpaH9.8 Is Secreted from Bacteria within Mammalian Cells and Transported to the Nucleus
inferredcites →https://doi.org/10.1093/genetics/156.2.477openalex-snapshot
Long-Term Experimental Evolution inEscherichia coli.IX. Characterization of Insertion Sequence-Mediated Mutations and Rearrangements
inferredcites →https://doi.org/10.1093/molbev/msh118openalex-snapshot
A Specific Genetic Background Is Required for Acquisition and Expression of Virulence Factors in Escherichia coli
inferredcites →https://doi.org/10.1093/nar/gkf566openalex-snapshot
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
inferredcites →https://doi.org/10.1093/nar/gkh063openalex-snapshot
The KEGG resource for deciphering the genome
inferredcites →https://doi.org/10.1093/nar/gkj033openalex-snapshot
ShiBASE: an integrated database for comparative genomics of Shigella
inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
inferredcites →https://doi.org/10.1101/gr.8.3.195openalex-snapshot
Consed: A Graphical Tool for Sequence Finishing
inferredcites →https://doi.org/10.1111/j.1365-2958.1993.tb01707.xopenalex-snapshot
The absence of a surface protease, OmpT, determines the intercellular spreading ability of Shigella: the relationship between the ompT and kcpA loci
inferredcites →https://doi.org/10.1111/j.1365-2958.1995.mmi_17010123.xopenalex-snapshot
SepA, the major extracellular protein of Shigella flexneri: autonomous secretion and involvement in tissue invasion
inferredcites →https://doi.org/10.1126/science.1099930openalex-snapshot
Iron-Source Preference of Staphylococcus aureus Infections
inferredcites →https://doi.org/10.1126/science.277.5331.1453openalex-snapshot
The Complete Genome Sequence of Escherichia coli K-12
inferredcites →https://doi.org/10.1128/iai.39.3.1392-1402.1983openalex-snapshot
Alterations in the pathogenicity of Escherichia coli K-12 after transfer of plasmid and chromosomal genes from Shigella flexneri
inferredcites →https://doi.org/10.1128/iai.55.3.594-599.1987openalex-snapshot
Virulence of iron transport mutants of Shigella flexneri and utilization of host iron compounds
inferredcites →https://doi.org/10.1128/iai.56.12.3099-3109.1988openalex-snapshot
Role of Shiga toxin in the pathogenesis of bacillary dysentery, studied by using a Tox- mutant of Shigella dysenteriae 1
inferredcites →https://doi.org/10.1128/iai.65.11.4606-4614.1997openalex-snapshot
Use of a novel approach, termed island probing, identifies the Shigella flexneri she pathogenicity island which encodes a homolog of the immunoglobulin A protease-like family of proteins
inferredcites →https://doi.org/10.1128/iai.65.12.5358-5363.1997openalex-snapshot
Identification of shuA, the gene encoding the heme receptor of Shigella dysenteriae, and analysis of invasion and intracellular multiplication of a shuA mutant
inferredcites →https://doi.org/10.1128/iai.66.8.3810-3817.1998openalex-snapshot
Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7
inferredcites →https://doi.org/10.1128/iai.67.11.5587-5596.1999openalex-snapshot
Characterization of Pic, a Secreted Protease of Shigella flexneri and Enteroaggregative Escherichia coli
inferredcites →https://doi.org/10.1128/iai.68.10.6056-6061.2000openalex-snapshot
Comparison of O-Antigen Gene Clusters of Escherichia coli ( Shigella ) Sonnei and Plesiomonas shigelloides O17: Sonnei Gained Its Current Plasmid-Borne O-Antigen Genes from P. shigelloides in a Recent Event
inferredcites →https://doi.org/10.1128/iai.68.5.2457-2463.2000openalex-snapshot
The sigA Gene Which Is Borne on the she Pathogenicity Island of Shigella flexneri 2a Encodes an Exported Cytopathic Protease Involved in Intestinal Fluid Accumulation
inferredcites →https://doi.org/10.1128/iai.68.6.3608-3619.2000openalex-snapshot
Shigella flexneriIpaH7.8Facilitates Escape of Virulent Bacteria from the Endocytic Vacuoles of Mouse and Human Macrophages
inferredcites →https://doi.org/10.1128/iai.69.10.6303-6309.2001openalex-snapshot
Molecular Evolution of Large Virulence Plasmid in Shigella Clones and Enteroinvasive Escherichia coli
inferredcites →https://doi.org/10.1128/iai.69.12.7588-7595.2001openalex-snapshot
Characterization of a Shiga Toxin-Encoding Temperate Bacteriophage of Shigella sonnei
inferredcites →https://doi.org/10.1128/iai.70.4.1896-1908.2002openalex-snapshot
The Nucleotide Sequence of Shiga Toxin (Stx) 2e-Encoding Phage φP27 Is Not Related to Other Stx Phage Genomes, but the Modular Genetic Structure Is Conserved
inferredcites →https://doi.org/10.1128/iai.70.9.4880-4891.2002openalex-snapshot
The YadA Protein ofYersinia pseudotuberculosisMediates High-Efficiency Uptake into Human Cells under Environmental Conditions in Which Invasin Is Repressed
inferredcites →https://doi.org/10.1128/iai.71.11.6298-6306.2003openalex-snapshot
Comparison of Two Major Forms of the Shigella Virulence Plasmid pINV: Positive Selection Is a Major Force Driving the Divergence
inferredcites →https://doi.org/10.1128/iai.71.5.2775-2786.2003openalex-snapshot
Complete Genome Sequence and Comparative Genomics ofShigella flexneriSerotype 2a Strain 2457T
inferredcites →https://doi.org/10.1128/iai.72.12.6780-6789.2004openalex-snapshot
Yersinia enterocolitica Adhesin A Induces Production of Interleukin-8 in Epithelial Cells
inferredcites →https://doi.org/10.1128/iai.72.9.5080-5088.2004openalex-snapshot
Molecular Evolutionary Relationships of Enteroinvasive Escherichia coli and Shigella spp
inferredcites →https://doi.org/10.1128/jb.179.22.6994-7003.1997openalex-snapshot
General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae
inferredcites →https://doi.org/10.1128/jb.180.6.1446-1453.1998openalex-snapshot
IroN, a Novel Outer Membrane Siderophore Receptor Characteristic of Salmonella enterica
inferredcites →https://doi.org/10.1128/jb.182.9.2416-2421.2000openalex-snapshot
The Stability Region of the Large Virulence Plasmid of Shigella flexneri Encodes an Efficient Postsegregational Killing System
inferredcites →https://doi.org/10.1128/jb.183.14.4176-4182.2001openalex-snapshot
The SHI-3 Iron Transport Island of Shigella boydii 0-1392 Carries the Genes for Aerobactin Synthesis and Transport
inferredcites →https://doi.org/10.1128/jb.186.12.3911-3921.2004openalex-snapshot
Extensive Genomic Diversity in Pathogenic Escherichia coli and Shigella Strains Revealed by Comparative Genomic Hybridization Microarray
inferredcites →https://doi.org/10.1128/jcm.17.4.681-684.1983openalex-snapshot
Antigenic relationships between the enteroinvasive Escherichia coli O antigens O28ac, O112ac, O124, O136, O143, O144, O152, and O164 and Shigella O antigens
inferredcites →https://doi.org/10.1128/mmbr.55.2.206-224.1991openalex-snapshot
Genetic basis of virulence in Shigella species
inferredcites →https://doi.org/10.1152/ajpgi.2001.280.3.g319openalex-snapshot
III. Shigellosis: from symptoms to molecular pathogenesis
inferredcites →https://doi.org/10.1172/jci117991openalex-snapshot
Shigella enterotoxin 1: an enterotoxin of Shigella flexneri 2a active in rabbit small intestine in vivo and in vitro.

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.18147/smn.2016/paper:173openalex-extracted
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inferred← citeshttps://doi.org/10.1002/9781118684856.ch8openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/9781119951438.eibc2060openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/9781683670438.mcm0039openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/9781683674849.mcm0039openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/bies.200800216openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/jcp.27828openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/mbo3.807openalex-snapshot
Shifting national surveillance of Shigella infections toward geno‐serotyping by the development of a tailored Luminex assay and NGS workflow
inferred← citeshttps://doi.org/10.1002/mco2.70569openalex-snapshot
Divergent Evolution and Local Establishment of Multidrug‐Resistant Shigella sonnei in China
inferred← citeshttps://doi.org/10.1002/mef2.70001openalex-snapshot
Role of next‐generation sequencing in revolutionizing healthcare for cancer management
inferred← citeshttps://doi.org/10.1002/pmic.200900196openalex-snapshot
The Shigella dysenteriae serotype 1 proteome, profiled in the host intestinal environment, reveals major metabolic modifications and increased expression of invasive proteins
inferred← citeshttps://doi.org/10.1007/7171_2006_066openalex-snapshot
Genomes and Genome-Level Engineering of Amino Acid-Producing Bacteria
inferred← citeshttps://doi.org/10.1007/82_2018_104openalex-snapshot
Shigella and Enteroinvasive Escherichia Coli
inferred← citeshttps://doi.org/10.1007/82_2021_248openalex-snapshot
Shigella-Controlled Human Infection Models: Current and Future Perspectives
inferred← citeshttps://doi.org/10.1007/978-1-4419-7686-4_5openalex-snapshot
Genomics of Escherichia and Shigella
inferred← citeshttps://doi.org/10.1007/978-1-4614-8824-8_7openalex-snapshot
Soil Contaminants: Sources, Effects, and Approaches for Remediation
inferred← citeshttps://doi.org/10.1007/978-3-319-56836-2_7openalex-snapshot
Shigella: Virulence Factors and Pathogenicity
inferred← citeshttps://doi.org/10.1007/978-3-319-67651-7_28openalex-snapshot
Shigella spp.
inferred← citeshttps://doi.org/10.1007/978-3-642-20763-1_17openalex-snapshot
Evolutionary Dynamics and Genomic Impact of Prokaryote Transposable Elements
inferred← citeshttps://doi.org/10.1007/978-3-642-30144-5_100openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-642-32864-0_9openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-642-38922-1_236openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00018-013-1355-8openalex-snapshot
Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence
inferred← citeshttps://doi.org/10.1007/s00203-016-1299-0openalex-snapshot
A comparative study of the evolution of cellobiose utilization in Escherichia coli and Shigella sonnei
inferred← citeshttps://doi.org/10.1007/s00203-020-02034-3openalex-snapshot
Shigella sonnei: virulence and antibiotic resistance
inferred← citeshttps://doi.org/10.1007/s00239-006-0052-8openalex-snapshot
Revisiting the Molecular Evolutionary History of Shigella spp.
inferred← citeshttps://doi.org/10.1007/s00248-010-9717-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00449-025-03213-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10096-011-1395-7openalex-snapshot
Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli
inferred← citeshttps://doi.org/10.1007/s10123-020-00145-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10295-007-0258-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10534-008-9188-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10709-011-9593-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11356-012-0777-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11427-009-0009-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s11427-010-4089-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s42770-021-00571-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s43621-024-00666-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-369408-9.00002-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-369408-9.00058-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-397048-0.00002-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-397048-0.00007-3openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-397048-0.00014-0openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-397169-2.00065-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-801238-3.05090-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-822891-3.00012-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-323-99886-4.00020-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-443-06839-3.00097-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-008055232-3.60866-9openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-1-4557-4801-3.00101-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.annepidem.2006.09.004openalex-snapshot
Contributions of Molecular Epidemiology to the Understanding of Infectious Disease Transmission, Pathogenesis, and Evolution
inferred← citeshttps://doi.org/10.1016/j.biopha.2016.07.052openalex-snapshot
Antidiabetic assessment; in vivo study of gold and core-shell silver-gold nanoparticles on streptozotocin-induced diabetic rats
inferred← citeshttps://doi.org/10.1016/j.bjm.2017.01.014openalex-snapshot
Enterobacterial repetitive intergenic consensus (ERIC)-PCR analysis as a reliable evidence for suspected Shigella spp. outbreaks
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.04.106openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.chom.2007.02.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.chom.2016.02.011openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.chom.2016.04.015openalex-snapshot
Advances in Understanding Bacterial Pathogenesis Gained from Whole-Genome Sequencing and Phylogenetics
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2007.03.006openalex-snapshot
Epidemiology and evolution of genotype and antimicrobial resistance of an imported Shigella sonnei clone circulating in central Taiwan
inferred← citeshttps://doi.org/10.1016/j.diagmicrobio.2016.05.017openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.envint.2024.108594openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.eti.2020.101248openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.forsciint.2013.05.031openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.gene.2007.10.035openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.gene.2015.03.044openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ijmm.2008.06.004openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ijmm.2013.09.007openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ijmm.2015.04.005openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ijmm.2025.151677openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jbiotec.2008.03.017openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jopr.2013.07.030openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.lpm.2007.03.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.meegid.2008.10.003openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.meegid.2011.07.015openalex-snapshot
Single nucleotide polymorphism (SNP)-based differentiation of Shigella isolates by pyrosequencing
inferred← citeshttps://doi.org/10.1016/j.meegid.2012.01.005openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.meegid.2013.12.017openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.meegid.2017.07.007openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.mehy.2007.02.036openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.micres.2015.08.006openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.mimet.2006.05.018openalex-snapshot
A biased detection of the flexible genome content: Missing large restriction fragments in comparative genomics
inferred← citeshttps://doi.org/10.1016/j.mimet.2014.12.003openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.phrp.2016.10.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.plasmid.2007.08.002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.resmic.2007.05.001openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.resmic.2012.07.004openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.resmic.2015.06.007openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.tree.2017.09.006openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.vaccine.2015.04.074openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.vetmic.2011.05.023openalex-snapshot
The Ins and Outs of siderophore mediated iron uptake by extra-intestinal pathogenic Escherichia coli
inferred← citeshttps://doi.org/10.1016/j.virol.2007.10.032openalex-snapshot
Molecular characterization of L-413C, a P2-related plague diagnostic bacteriophage
inferred← citeshttps://doi.org/10.1016/j.virol.2012.01.040openalex-snapshot
Structural evolution of the P22-like phages: Comparison of Sf6 and P22 procapsid and virion architectures
inferred← citeshttps://doi.org/10.1016/j.watres.2009.10.004openalex-snapshot
Differentiation and identification of Shigella spp. and enteroinvasive Escherichia coli in environmental waters by a molecular method and biochemical test
inferred← citeshttps://doi.org/10.1016/j.wroa.2025.100403openalex-snapshot
Metagenome-informed QMRA and resistome profiling reveal hidden health risks in Yongding River wastewater
inferred← citeshttps://doi.org/10.1016/j.ygeno.2009.01.009openalex-snapshot
Estimation of bacterial species phylogeny through oligonucleotide frequency distances
inferred← citeshttps://doi.org/10.1017/cbo9780511541520.005openalex-snapshot
The Role of Bacteriophages in the Generation and Spread of Bacterial Pathogens
inferred← citeshttps://doi.org/10.1017/s0950268812002002openalex-snapshot
Comparative analysis ofShigella sonneibiotype g isolated from paediatric populations in Egypt, 1999–2005
inferred← citeshttps://doi.org/10.1017/s0950268813000137openalex-snapshot
Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK
inferred← citeshttps://doi.org/10.1017/s0950268818001498openalex-snapshot
Prediction of Shigellosis outcomes in Israel using machine learning classifiers
inferred← citeshttps://doi.org/10.1021/acs.est.6c04146openalex-snapshot
Antibiotic Metabolites Are an Overlooked Driver of Resistance Dissemination in Plant Systems
inferred← citeshttps://doi.org/10.1038/cmi.2008.11openalex-snapshot
Salmonella Typhi: from a Human Pathogen to a Vaccine Vector
inferred← citeshttps://doi.org/10.1038/ng.2369openalex-snapshot
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2016.27openalex-snapshot
Global phylogeography and evolutionary history of Shigella dysenteriae type 1
inferred← citeshttps://doi.org/10.1038/nrgastro.2013.12openalex-snapshot
Progress and pitfalls in Shigella vaccine research
inferred← citeshttps://doi.org/10.1038/nrmicro.2016.10openalex-snapshot
The genomic signatures of Shigella evolution, adaptation and geographical spread
inferred← citeshttps://doi.org/10.1038/s41467-021-22700-4openalex-snapshot
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei
inferred← citeshttps://doi.org/10.1038/s41564-017-0095-1openalex-snapshot
Sieving through gut models of colonization resistance
inferred← citeshttps://doi.org/10.1038/s41579-018-0031-2openalex-snapshot
Going around in circles: virulence plasmids in enteric pathogens
inferred← citeshttps://doi.org/10.1038/s41579-024-01126-xopenalex-snapshot
Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
inferred← citeshttps://doi.org/10.1038/s41598-018-25764-3openalex-snapshot
Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance
inferred← citeshttps://doi.org/10.1038/s41598-019-39810-1openalex-snapshot
Mutational convergence acts as a major player in adaptive parallel evolution of Shigella spp.
inferred← citeshttps://doi.org/10.1038/s41598-019-46831-3openalex-snapshot
Genomic and molecular characterisation of Escherichia marmotae from wild rodents in Qinghai-Tibet plateau as a potential pathogen
inferred← citeshttps://doi.org/10.1038/s44454-025-00017-xopenalex-snapshot
Metagenomics with comprehensive validation as a supplementary tool for QMRA in SanjiangYuan watershed
inferred← citeshttps://doi.org/10.1038/srep35168openalex-snapshot
Bacterial intra-species gene loss occurs in a largely clocklike manner mostly within a pool of less conserved and constrained genes
inferred← citeshttps://doi.org/10.1038/srep46465openalex-snapshot
Role of the virulence plasmid in acid resistance of Shigella flexneri
inferred← citeshttps://doi.org/10.1039/b514050copenalex-snapshot
Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics
inferred← citeshttps://doi.org/10.1039/c3mb70476aopenalex-snapshot
Predicting genetic and ecological characteristics of bacterial species by comparing the trajectories of d N /d S and d I /d S in bacterial genomes
inferred← citeshttps://doi.org/10.1039/c6em00222fopenalex-snapshot
Environmental transmission of diarrheal pathogens in low and middle income countries
inferred← citeshttps://doi.org/10.1042/bj20141315openalex-snapshot
Expression of different bacterial cytotoxins is controlled by two global transcription factors, CRP and Fis, that co-operate in a shared-recruitment mechanism
inferred← citeshttps://doi.org/10.1053/j.gastro.2008.12.072openalex-snapshot
Intrahost Genome Alterations in Enterohemorrhagic Escherichia coli
inferred← citeshttps://doi.org/10.1073/pnas.0808945106openalex-snapshot
Biogeography of the Sulfolobus islandicus pan-genome
inferred← citeshttps://doi.org/10.1074/jbc.m109.062679openalex-snapshot
The Mannitol Operon Repressor MtlR Belongs to a New Class of Transcription Regulators in Bacteria
inferred← citeshttps://doi.org/10.1080/14760584.2026.2686291openalex-snapshot
Accelerating Shigella vaccines: from decades of research to global access
inferred← citeshttps://doi.org/10.1080/20477724.2019.1632062openalex-snapshot
Virulence gene profiles of Shigella species isolated from stool specimens in India: its association with clinical manifestation and antimicrobial resistance
inferred← citeshttps://doi.org/10.1080/21505594.2022.2111754openalex-snapshot
Novel organisation and regulation of the pic promoter from enteroaggregative and uropathogenic Escherichia coli
inferred← citeshttps://doi.org/10.1080/21505594.2023.2280838openalex-snapshot
Pathogenicity and virulence of Shigella sonnei : A highly drug-resistant pathogen of increasing prevalence
inferred← citeshttps://doi.org/10.1080/22221751.2022.2109514openalex-snapshot
Evolutionary and genomic insights into the long-term colonization of Shigella flexneri in animals
inferred← citeshttps://doi.org/10.1086/518143openalex-snapshot
The Genome of Salmonella enterica Serovar Typhi
inferred← citeshttps://doi.org/10.1088/1742-6596/1664/1/012123openalex-snapshot
The Detection and Investigation of Tetracycline Resistance Associated Genes Among Shigella Isolates Using Polymerase Chain Reaction and Phylogenetic Analysis Methods In Al-Diwaniyah province, Iraq
inferred← citeshttps://doi.org/10.1089/fpd.2016.2221openalex-snapshot
Multiplex Polymerase Chain Reaction for Identification of Shigellae and Four Shigella Species Using Novel Genetic Markers Screened by Comparative Genomics
inferred← citeshttps://doi.org/10.1089/hs.2016.0026openalex-snapshot
Surveillance for Travel and Domestically Acquired Multidrug-Resistant Human Shigella Infections—Pennsylvania, 2006-2014
inferred← citeshttps://doi.org/10.1089/mdr.2012.0008openalex-snapshot
pCERC1, a Small, Globally Disseminated Plasmid Carrying the dfrA14 Cassette in the strA Gene of the sul2-strA-strB Gene Cluster
inferred← citeshttps://doi.org/10.1093/bioinformatics/btw423openalex-snapshot
Detecting horizontal gene transfer by mapping sequencing reads across species boundaries
inferred← citeshttps://doi.org/10.1093/dnares/dsn009openalex-snapshot
Comparative Genome Analysis of Lactobacillus reuteri and Lactobacillus fermentum Reveal a Genomic Island for Reuterin and Cobalamin Production
inferred← citeshttps://doi.org/10.1093/dnares/dsn011openalex-snapshot
The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome Evolution
inferred← citeshttps://doi.org/10.1093/femsle/fnac043openalex-snapshot
The VirF21:VirF30 protein ratio is affected by temperature and impacts Shigella flexneri host cell invasion
inferred← citeshttps://doi.org/10.1093/femsle/fnu045openalex-snapshot
Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model
inferred← citeshttps://doi.org/10.1093/femsle/fnv011openalex-snapshot
The genome of Shigella dysenteriae strain Sd1617 comparison to representative strains in evaluating pathogenesis
inferred← citeshttps://doi.org/10.1093/femspd/ftab019openalex-snapshot
The enigmatic biology of rickettsiae: recent advances, open questions and outlook
inferred← citeshttps://doi.org/10.1093/femspd/ftw054openalex-snapshot
picgene of enteroaggregativeEscherichia coliand its association with diarrhea in Peruvian children
inferred← citeshttps://doi.org/10.1093/femspd/ftw098openalex-snapshot
Stable expression ofShigella dysenteriaeserotype 1 O-antigen genes integrated into the chromosome of liveSalmonellaoral vaccine vector Ty21a
inferred← citeshttps://doi.org/10.1093/gbe/evq003openalex-snapshot
Continuing Evolution of Burkholderia mallei Through Genome Reduction and Large-Scale Rearrangements
inferred← citeshttps://doi.org/10.1093/gbe/evr096openalex-snapshot
Short- and Long-term Evolutionary Dynamics of Bacterial Insertion Sequences: Insights from Wolbachia Endosymbionts
inferred← citeshttps://doi.org/10.1093/gbe/evs001openalex-snapshot
Evolutionary Dynamics of Small RNAs in 27 Escherichia coli and Shigella Genomes
inferred← citeshttps://doi.org/10.1093/infdis/jiz220openalex-snapshot
Novel Insights Into the Spread of Enteric Pathogens Using Genomics
inferred← citeshttps://doi.org/10.1093/jb/mvv052openalex-snapshot
Characterization, validation and application of a DNA microarray for the detection of mandatory and other waterborne pathogens
inferred← citeshttps://doi.org/10.1093/molbev/msj125openalex-snapshot
Enterobacterial Repetitive Intergenic Consensus (ERIC) Sequences in Escherichia coli: Evolution and Implications for ERIC-PCR
inferred← citeshttps://doi.org/10.1093/molbev/msm014openalex-snapshot
Causes of Insertion Sequences Abundance in Prokaryotic Genomes
inferred← citeshttps://doi.org/10.1093/molbev/msm282openalex-snapshot
A Comparative Synteny Map of Burkholderia Species Links Large-Scale Genome Rearrangements to Fine-Scale Nucleotide Variation in Prokaryotes
inferred← citeshttps://doi.org/10.1093/molbev/msn252openalex-snapshot
The Temporal Dynamics of Slightly Deleterious Mutations in Escherichia coli and Shigella spp.
inferred← citeshttps://doi.org/10.1093/molbev/msr054openalex-snapshot
Function-Specific Accelerations in Rates of Sequence Evolution Suggest Predictable Epistatic Responses to Reduced Effective Population Size
inferred← citeshttps://doi.org/10.1093/nar/gkj033openalex-snapshot
ShiBASE: an integrated database for comparative genomics of Shigella
inferred← citeshttps://doi.org/10.1093/nar/gkj511openalex-snapshot
Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands
inferred← citeshttps://doi.org/10.1093/nar/gkm951openalex-snapshot
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics
inferred← citeshttps://doi.org/10.1093/nar/gkt748openalex-snapshot
Structural insights into VirB-DNA complexes reveal mechanism of transcriptional activation of virulence genes
inferred← citeshttps://doi.org/10.1093/nar/gkv913openalex-snapshot
Conformational toggling controls target site choice for the heteromeric transposase element Tn7
inferred← citeshttps://doi.org/10.1097/md.0000000000016928openalex-snapshot
Epidemiologic features of shigellosis and associated climatic factors in Taiwan
inferred← citeshttps://doi.org/10.1097/qco.0000000000000475openalex-snapshot
Recent insights into Shigella: a major contributor to the global diarrhoeal disease burden
inferred← citeshttps://doi.org/10.1098/rsob.120112openalex-snapshot
Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli – Shigella genetic exchange communities
inferred← citeshttps://doi.org/10.1099/jmm.0.000739openalex-snapshot
Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005–2016
inferred← citeshttps://doi.org/10.1099/jmm.0.064220-0openalex-snapshot
Immunostimulatory CpG motifs in the genomes of gut bacteria and their role in human health and disease
inferred← citeshttps://doi.org/10.1099/jmm.0.47322-0openalex-snapshot
Multilocus sequence typing analysis of Shigella flexneri isolates collected in Asian countries
inferred← citeshttps://doi.org/10.1099/mgen.0.000132openalex-snapshot
Completing bacterial genome assemblies with multiplex MinION sequencing
inferred← citeshttps://doi.org/10.1099/mgen.0.000170openalex-snapshot
Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel
inferred← citeshttps://doi.org/10.1099/mgen.0.000181openalex-snapshot
An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men
inferred← citeshttps://doi.org/10.1099/mgen.0.000644openalex-snapshot
Acquisition and loss of CTX-M plasmids in Shigella species associated with MSM transmission in the UK
inferred← citeshttps://doi.org/10.1099/mgen.0.000704openalex-snapshot
Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping
inferred← citeshttps://doi.org/10.1099/mgen.0.000736openalex-snapshot
The evolutionary history of Shigella flexneri serotype 6 in Asia
inferred← citeshttps://doi.org/10.1099/mgen.0.000761openalex-snapshot
Towards comprehensive understanding of bacterial genetic diversity: large-scale amplifications in Bordetella pertussis and Mycobacterium tuberculosis
inferred← citeshttps://doi.org/10.1099/mgen.0.000846openalex-snapshot
Virulence plasmid pINV as a genetic signature for Shigella flexneri phylogeny
inferred← citeshttps://doi.org/10.1099/mgen.0.001593openalex-snapshot
The Resistance-Nodulation-Division efflux pump EefABC is highly conserved within lineages of E. coli commonly associated with infection
inferred← citeshttps://doi.org/10.1099/mgen.0.001596openalex-snapshot
A public resource of 15 genomically characterized representative strains of Shigella sonnei
inferred← citeshttps://doi.org/10.1099/mic.0.000482openalex-snapshot
Diversity of the auxotrophic requirements in natural isolates of Escherichia coli
inferred← citeshttps://doi.org/10.1099/mic.0.001434openalex-snapshot
Shigella sonnei utilises colicins during inter-bacterial competition
inferred← citeshttps://doi.org/10.1099/mic.0.030759-0openalex-snapshot
Enterohaemorrhagic Escherichia coli serogroup O111 inhibits NF-κB-dependent innate responses in a manner independent of a type III secreted OspG orthologue
inferred← citeshttps://doi.org/10.1099/mic.0.033977-0openalex-snapshot
Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups
inferred← citeshttps://doi.org/10.1101/2020.02.06.937284openalex-snapshot
Duplications drive diversity in Bordetella pertussis on an underestimated scale
inferred← citeshttps://doi.org/10.1101/2021.09.22.461432openalex-snapshot
Reclassification of Shigella species as later heterotypic synonyms of Escherichia coli in the Genome Taxonomy Database
inferred← citeshttps://doi.org/10.1101/2022.08.23.504947openalex-snapshot
Temporal GWAS identifies a widely distributed novel protein Stv contributing to pathogen success in Shigella spp
inferred← citeshttps://doi.org/10.1101/2024.08.01.606150openalex-snapshot
The RND efflux pump EefABC is highly conserved within lineages of E. coli commonly associated with infection
inferred← citeshttps://doi.org/10.1101/2025.02.03.635664openalex-snapshot
A public resource of 15 genomically characterised representative strains of Shigella sonnei
inferred← citeshttps://doi.org/10.1101/2025.03.21.644136openalex-snapshot
Whole-Genome Sequencing, Annotation and Phenotypic Taxonomic Confirmation of a Multidrug-Resistant Escherichia coli Strain Isolated from the Blood of a Sepsis Patient
inferred← citeshttps://doi.org/10.1101/459701openalex-snapshot
Natural avirulent Shigella boydii strain in the Brazilian Amazon lacks major virulence genes and present Type II, Type III and Type VI Secretion Systems
inferred← citeshttps://doi.org/10.1101/549998openalex-snapshot
Multiple evolutionary trajectories for non-O157 Shiga toxigenic Escherichia coli
inferred← citeshttps://doi.org/10.1101/gr.082263.108openalex-snapshot
Inferring genomic flux in bacteria
inferred← citeshttps://doi.org/10.1101/gr.089615.108openalex-snapshot
Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes
inferred← citeshttps://doi.org/10.1104/pp.106.083451openalex-snapshot
Impaired Photosynthesis in Phosphatidylglycerol-Deficient Mutant of Cyanobacterium Anabaena sp. PCC7120 with a Disrupted Gene Encoding a Putative Phosphatidylglycerophosphatase
inferred← citeshttps://doi.org/10.1107/s2053230x14025941openalex-snapshot
Overexpression, purification, crystallization and preliminary X-ray crystallographic analysis of SF173 fromShigella flexneri
inferred← citeshttps://doi.org/10.1109/tcbb.2011.78openalex-snapshot
Protein Classification with Extended-Sequence Coding by Sliding Window
inferred← citeshttps://doi.org/10.1111/1751-7915.13560openalex-snapshot
DNA sequencing, genomes and genetic markers of microbes on fruits and vegetables
inferred← citeshttps://doi.org/10.1111/j.1365-2672.2011.05003.xopenalex-snapshot
Bacteriophages for the treatment of Pseudomonas aeruginosa infections
inferred← citeshttps://doi.org/10.1111/j.1365-2958.2006.05456.xopenalex-snapshot
Transcriptional slippage controls production of type III secretion apparatus components in Shigella flexneri
inferred← citeshttps://doi.org/10.1111/j.1365-2958.2008.06126.xopenalex-snapshot
A multifaceted role for polyamines in bacterial pathogens
inferred← citeshttps://doi.org/10.1111/j.1462-2920.2005.00985.xopenalex-snapshot
Protecting sausages with bacteria instead of salt
inferred← citeshttps://doi.org/10.1111/j.1462-2920.2008.01635.xopenalex-snapshot
Microbial evolution: the genome, the regulome and beyond
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2007.00647.xopenalex-snapshot
Gene expression profiling of the pH response inShigella flexneri2a
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2007.00686.xopenalex-snapshot
Detecting low concentrations ofShigella sonneiin environmental water samples by PCR
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2007.00957.xopenalex-snapshot
The distribution of insertion sequences in the genome ofShigella flexneristrain 2457T
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2008.01187.xopenalex-snapshot
Characterization of the Arc two-component signal transduction system of the capnophilic rumen bacteriumMannheimia succiniciproducens
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2008.01290.xopenalex-snapshot
Occurrence and characteristics of the cytolysin A gene inShigellastrains and other members of the familyEnterobacteriaceae
inferred← citeshttps://doi.org/10.1111/j.1574-6976.2008.00114.xopenalex-snapshot
Structure and genetics ofShigellaO antigens
inferred← citeshttps://doi.org/10.1111/j.1574-6976.2009.00169.xopenalex-snapshot
Genesis, effects and fates of repeats in prokaryotic genomes
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