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SIANN: Strain Identification by Alignment to Near Neighbors

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/msb.2013.22openalex-snapshot

Computational meta'omics for microbial community studies

inferredcites →https://doi.org/10.1038/nature11711openalex-snapshot

Genomic variation landscape of the human gut microbiome

inferredcites →https://doi.org/10.1038/nmeth.1358openalex-snapshot

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

inferredcites →https://doi.org/10.1038/nmeth.2066openalex-snapshot

Metagenomic microbial community profiling using unique clade-specific marker genes

inferredcites →https://doi.org/10.1038/nmeth.2693openalex-snapshot

Metagenomic species profiling using universal phylogenetic marker genes

inferredcites →https://doi.org/10.1093/bioinformatics/btt389openalex-snapshot

Scalable metagenomic taxonomy classification using a reference genome database

inferredcites →https://doi.org/10.1101/gr.120618.111openalex-snapshot

Integrative analysis of environmental sequences using MEGAN4

inferredcites →https://doi.org/10.1126/science.1208344openalex-snapshot

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

inferredcites →https://doi.org/10.1186/1471-2105-13-92openalex-snapshot

A comparative evaluation of sequence classification programs

inferredcites →https://doi.org/10.1186/1471-2164-12-s2-s4openalex-snapshot

Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

inferredcites →https://doi.org/10.1186/1756-0500-5-460openalex-snapshot

Rapid phylogenetic and functional classification of short genomic fragments with signature peptides

inferredcites →https://doi.org/10.1186/gb-2009-10-2-r23openalex-snapshot

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot

Kraken: ultrafast metagenomic sequence classification using exact alignments

inferredcites →https://doi.org/10.1371/journal.pone.0003373openalex-snapshot

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/b978-0-12-801238-3.02483-1openalex-snapshot

Microbial Forensics☆

inferred← citeshttps://doi.org/10.1101/036681openalex-snapshot

Searching more genomic sequence with less memory for fast and accurate metagenomic profiling

inferred← citeshttps://doi.org/10.1101/gr.184879.114openalex-snapshot

Using populations of human and microbial genomes for organism detection in metagenomes

inferred← citeshttps://doi.org/10.1186/2041-2223-5-9openalex-snapshot

Validation of high throughput sequencing and microbial forensics applications

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