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Conservation of expression regulation throughout the animal kingdom

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Direct examination of chromosomal clustering of organ‐specific genes in the chordate Ciona intestinalis

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Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues

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Volume changes in protein evolution

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A β-Catenin Identified by Functional Rather Than Sequence Criteria and Its Role in Wnt/MAPK Signaling

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Profiling by Image Registration Reveals Common Origin of Annelid Mushroom Bodies and Vertebrate Pallium

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Beyond cell adhesion: The role of armadillo proteins in the heart

inferredcites →https://doi.org/10.1016/j.devcel.2008.02.015openalex-snapshot

The C. elegans SYS-1 Protein Is a Bona Fide β-Catenin

inferredcites →https://doi.org/10.1016/j.devcel.2011.03.015openalex-snapshot

Mapping Gene Expression in Two Xenopus Species: Evolutionary Constraints and Developmental Flexibility

inferredcites →https://doi.org/10.1016/j.devcel.2012.04.004openalex-snapshot

Developmental Milestones Punctuate Gene Expression in the Caenorhabditis Embryo

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Developmental and evolutionary basis for drought tolerance of the Anopheles gambiae embryo

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Random Forests

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Distinct β-catenins mediate adhesion and signalling functions in C. elegans

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Deep homology and the origins of evolutionary novelty

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A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

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The evolution of gene expression levels in mammalian organs

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The ctenophore genome and the evolutionary origins of neural systems

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Comparative analysis of the transcriptome across distant species

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Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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A global map of human gene expression

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Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

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Tissue-specific transcriptional regulation has diverged significantly between human and mouse

inferredcites →https://doi.org/10.1038/nrg3079openalex-snapshot

Evolution of microRNA diversity and regulation in animals

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Identifying functional links between genes by evolutionary transcriptomics

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A gene atlas of the mouse and human protein-encoding transcriptomes

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Tissue-driven hypothesis of genomic evolution and sequence-expression correlations

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Characterization of Drosophila melanogaster cytochrome P450 genes

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Systematic discovery of nonobvious human disease models through orthologous phenotypes

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Genomic patterns of pleiotropy and the evolution of complexity

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Genomic responses in mouse models poorly mimic human inflammatory diseases

inferredcites →https://doi.org/10.1083/jcb.118.3.681openalex-snapshot

The vertebrate adhesive junction proteins beta-catenin and plakoglobin and the Drosophila segment polarity gene armadillo form a multigene family with similar properties.

inferredcites →https://doi.org/10.1083/jcb.140.1.183openalex-snapshot

Signaling and Adhesion Activities of Mammalian β-Catenin and Plakoglobin in Drosophila

inferredcites →https://doi.org/10.1093/bioinformatics/bti042openalex-snapshot

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

inferredcites →https://doi.org/10.1093/bioinformatics/bts048openalex-snapshot

vHOG, a multispecies vertebrate ontology of homologous organs groups

inferredcites →https://doi.org/10.1093/bioinformatics/bts266openalex-snapshot

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human

inferredcites →https://doi.org/10.1093/gbe/evu070openalex-snapshot

Transcriptomic Analysis of the Highly Derived Radial Body Plan of a Sea Urchin

inferredcites →https://doi.org/10.1093/genetics/159.1.159openalex-snapshot

The Divergent Caenorhabditis elegans β-Catenin Proteins BAR-1, WRM-1 and HMP-2 Make Distinct Protein Interactions but Retain Functional Redundancy in Vivo

inferredcites →https://doi.org/10.1093/molbev/msj054openalex-snapshot

Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes

inferredcites →https://doi.org/10.1093/molbev/mss134openalex-snapshot

Molecular Signatures of the Three Stem Cell Lineages in Hydra and the Emergence of Stem Cell Function at the Base of Multicellularity

inferredcites →https://doi.org/10.1093/nar/gks1094openalex-snapshot

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

inferredcites →https://doi.org/10.1093/nar/gks1118openalex-snapshot

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

inferredcites →https://doi.org/10.1093/nar/gks1141openalex-snapshot

FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster

inferredcites →https://doi.org/10.1093/nar/gkt1092openalex-snapshot

FlyBase 102—advanced approaches to interrogating FlyBase

inferredcites →https://doi.org/10.1093/nar/gkt1205openalex-snapshot

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

inferredcites →https://doi.org/10.1093/nar/gkt1253openalex-snapshot

eggNOG v4.0: nested orthology inference across 3686 organisms

inferredcites →https://doi.org/10.1093/nar/gkt661openalex-snapshot

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology

inferredcites →https://doi.org/10.1093/nar/gku1163openalex-snapshot

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

inferredcites →https://doi.org/10.1097/01.psy.0000127692.23278.a9openalex-snapshot

What You See May Not Be What You Get: A Brief, Nontechnical Introduction to Overfitting in Regression-Type Models

inferredcites →https://doi.org/10.1101/gr.114595.110openalex-snapshot

A spatial and temporal map ofC. elegansgene expression

inferredcites →https://doi.org/10.1101/gr.1589103openalex-snapshot

Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution

inferredcites →https://doi.org/10.1101/gr.1924004openalex-snapshot

Elevated Rates of Protein Secretion, Evolution, and Disease Among Tissue-Specific Genes

inferredcites →https://doi.org/10.1111/j.1467-9868.2011.00771.xopenalex-snapshot

Regression Shrinkage and Selection via The Lasso: A Retrospective

inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

inferredcites →https://doi.org/10.1126/science.1087447openalex-snapshot

A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules

inferredcites →https://doi.org/10.1126/science.1231828openalex-snapshot

Deep Homology of Arthropod Central Complex and Vertebrate Basal Ganglia

inferredcites →https://doi.org/10.1186/1471-2105-11-312openalex-snapshot

GIGA: a simple, efficient algorithm for gene tree inference in the genomic age

inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot

Automated generation of heuristics for biological sequence comparison

inferredcites →https://doi.org/10.1186/1471-2148-11-198openalex-snapshot

The evolutionary history of the catenin gene family during metazoan evolution

inferredcites →https://doi.org/10.1186/1471-2164-10-128openalex-snapshot

Developmental gene expression profiles of the human pathogen Schistosoma japonicum

inferredcites →https://doi.org/10.1186/1471-2164-12-296openalex-snapshot

A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae

inferredcites →https://doi.org/10.1186/1471-2164-13-124openalex-snapshot

Comparative modular analysis of gene expression in vertebrate organs

inferredcites →https://doi.org/10.1186/1471-2164-14-266openalex-snapshot

Characterization of differential transcript abundance through time during Nematostella vectensis development

inferredcites →https://doi.org/10.1186/1471-2164-7-116openalex-snapshot

angaGEDUCI: Anopheles gambiae gene expression database with integrated comparative algorithms for identifying conserved DNA motifs in promoter sequences

inferredcites →https://doi.org/10.1186/1741-7007-10-90openalex-snapshot

A gene expression atlas of the domestic pig

inferredcites →https://doi.org/10.1186/2041-9139-4-16openalex-snapshot

A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development: a pipeline for de novo assembly in emergingmodel systems

inferredcites →https://doi.org/10.1186/gb-2007-8-8-r162openalex-snapshot

Microarray-based gene expression profiles in multiple tissues of the domesticated silkworm, Bombyx mori

inferredcites →https://doi.org/10.1186/gb-2013-14-2-r15openalex-snapshot

Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

inferredcites →https://doi.org/10.1186/jbiol130openalex-snapshot

Conservation of core gene expression in vertebrate tissues

inferredcites →https://doi.org/10.1242/dev.105288openalex-snapshot

BLIND ordering of large-scale transcriptomic developmental timecourses

inferredcites →https://doi.org/10.1371/journal.pbio.1000343openalex-snapshot

Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related Drosophila Species

inferredcites →https://doi.org/10.1371/journal.pcbi.1000417openalex-snapshot

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans

inferredcites →https://doi.org/10.1371/journal.pcbi.1001074openalex-snapshot

Accurate Quantification of Functional Analogy among Close Homologs

inferredcites →https://doi.org/10.1371/journal.pcbi.1002386openalex-snapshot

On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report

inferredcites →https://doi.org/10.1371/journal.pntd.0000543openalex-snapshot

Anti-schistosomal Intervention Targets Identified by Lifecycle Transcriptomic Analyses

inferredcites →https://doi.org/10.1371/journal.pntd.0001043openalex-snapshot

Gene Atlasing of Digestive and Reproductive Tissues in Schistosoma mansoni

inferredcites →https://doi.org/10.1371/journal.pntd.0001409openalex-snapshot

A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi

inferredcites →https://doi.org/10.3929/ethz-b-000667478openalex-snapshot

Two new Later Stone Age sites from the Final Pleistocene in the Falémé Valley, eastern Senegal

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/gbe/evw155openalex-snapshot

Tissue-Specific Venom Composition and Differential Gene Expression in Sea Anemones

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