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Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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A series of normal stages in the development of the chick embryo
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Stages of embryonic development of the zebrafish
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Testing the vulnerability of the phylotypic stage: On modularity and evolutionary conservation
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Evo‐Devo aspects of classical and molecular data in a historical perspective
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In search of the vertebrate phylotypic stage: A molecular examination of the developmental hourglass model and von Baer's third law
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Heterochrony and the Phylotypic Period
inferredcites →https://doi.org/10.1007/978-94-010-9435-1_11openalex-snapshot
Developmental Constraints, Generative Entrenchment, and the Innate-Acquired Distinction
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Isologous diversification: A theory of cell differentiation
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There is no highly conserved embryonic stage in the vertebrates: implications for current theories of evolution and development
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Conserved Patterns of Cell Movements during Vertebrate Gastrulation
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Ca2+ oscillatory pattern in fertilized mouse eggs affects gene expression and development to term
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Basic Local Alignment Search Tool
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A new model of developmental constraints as applied to the Drosophila system
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Evolutionary Developmental Biology
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Isologous diversification: A theory of cell differentiation
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Phylotypic stage or phantom: is there a highly conserved embryonic stage in vertebrates?
inferredcites →https://doi.org/10.1016/s0169-5347(98)01340-8openalex-snapshot
Phylotypic stage theory
inferredcites →https://doi.org/10.1017/s1464793102005948openalex-snapshot
Haeckel's ABC of evolution and development
inferredcites →https://doi.org/10.1038/361490a0openalex-snapshot
The zootype and the phylotypic stage
inferredcites →https://doi.org/10.1038/380037a0openalex-snapshot
A common plan for dorsoventral patterning in Bilateria
inferredcites →https://doi.org/10.1038/nprot.2007.324openalex-snapshot
Integration of biological networks and gene expression data using Cytoscape
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R: A Language for Data Analysis and Graphics
inferredcites →https://doi.org/10.1093/icb/21.2.391openalex-snapshot
Morphogenetic Movements and Fate Maps of Vertebrates
inferredcites →https://doi.org/10.1098/rspb.2002.2242openalex-snapshot
Inverting the hourglass: quantitative evidence against the phylotypic stage in vertebrate development
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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Polymorphism in developmental timing: intraspecific heterochrony in a Lake Victoria cichlid
inferredcites →https://doi.org/10.1111/j.1525-142x.2010.00400.xopenalex-snapshot
Molecular signaling in zebrafish development and the vertebrate phylotypic period
inferredcites →https://doi.org/10.1126/science.1140693openalex-snapshot
The Maternal-Zygotic Transition: Death and Birth of RNAs
inferredcites →https://doi.org/10.1186/1741-7007-5-1openalex-snapshot
The vertebrate phylotypic stage and an early bilaterian-related stage in mouse embryogenesis defined by genomic information
inferredcites →https://doi.org/10.1186/gb-2004-5-10-r80openalex-snapshot
Bioconductor: open software development for computational biology and bioinformatics
inferredcites →https://doi.org/10.1201/9781003064565openalex-snapshot
Normal Table of Xenopus Laevis (Daudin)
inferredcites →https://doi.org/10.1242/dev.039487openalex-snapshot
Maternal control of early mouse development
inferredcites →https://doi.org/10.1242/dev.129.13.3021openalex-snapshot
The last common bilaterian ancestor
inferredcites →https://doi.org/10.1242/dev.1994.supplement.135openalex-snapshot
Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
inferredcites →https://doi.org/10.1371/journal.pgen.1000311openalex-snapshot
Developmental Constraints on Vertebrate Genome Evolution
inferredcites →https://doi.org/10.5860/choice.34-1536openalex-snapshot
The shape of life: genes, development, and the evolution of animal form
inferredcites →https://doi.org/10.5860/choice.39-5182openalex-snapshot
From DNA to diversity: molecular genetics and the evolution of animal design
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inferred← citeshttps://doi.org/10.1038/s41556-018-0089-0openalex-snapshot
TFAP2C regulates transcription in human naive pluripotency by opening enhancers
inferred← citeshttps://doi.org/10.1038/s41556-023-01108-wopenalex-snapshot
A single-cell transcriptome atlas profiles early organogenesis in human embryos
inferred← citeshttps://doi.org/10.1038/s41559-017-0113openalex-snapshot
Developmental constraints shape the evolution of the nematode mid-developmental transition
inferred← citeshttps://doi.org/10.1038/s41559-017-0318-0openalex-snapshot
Constrained vertebrate evolution by pleiotropic genes
inferred← citeshttps://doi.org/10.1038/s41559-017-0389-yopenalex-snapshot
Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads
inferred← citeshttps://doi.org/10.1038/s41559-025-02941-yopenalex-snapshot
Deep conservation of cis-regulatory elements and chromatin organization in echinoderms uncover ancestral regulatory features of animal genomes
inferred← citeshttps://doi.org/10.1038/s41559-026-03171-6openalex-snapshot
Developmental contexts of gene-regulatory evolution following whole genome duplication in salmonids
inferred← citeshttps://doi.org/10.1038/s41586-018-0734-6openalex-snapshot
Amphioxus functional genomics and the origins of vertebrate gene regulation
inferred← citeshttps://doi.org/10.1038/s41586-024-08059-8openalex-snapshot
A transcriptomic hourglass in brown algae
inferred← citeshttps://doi.org/10.1038/s41588-022-01018-xopenalex-snapshot
Systematic reconstruction of cellular trajectories across mouse embryogenesis
inferred← citeshttps://doi.org/10.1038/s41588-022-01089-wopenalex-snapshot
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
inferred← citeshttps://doi.org/10.1038/s41588-025-02202-5openalex-snapshot
Conservation of regulatory elements with highly diverged sequences across large evolutionary distances
inferred← citeshttps://doi.org/10.1038/s41597-024-03542-3openalex-snapshot
High-resolution transcriptome datasets during embryogenesis of plant-parasitic nematodes
inferred← citeshttps://doi.org/10.1038/s41598-019-52577-9openalex-snapshot
Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance
inferred← citeshttps://doi.org/10.1038/s41598-021-90800-8openalex-snapshot
Comparative and evolutionary analyses reveal conservation and divergence of the notch pathway in lophotrochozoa
inferred← citeshttps://doi.org/10.1038/s42003-020-1091-1openalex-snapshot
Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms
inferred← citeshttps://doi.org/10.1038/s42003-022-03153-xopenalex-snapshot
A pictorial account of the human embryonic heart between 3.5 and 8 weeks of development
inferred← citeshttps://doi.org/10.1038/s42003-025-07712-wopenalex-snapshot
Developmental phylotranscriptomics in grapevine suggests an ancestral role of somatic embryogenesis
inferred← citeshttps://doi.org/10.1038/srep34664openalex-snapshot
High expression of new genes in trochophore enlightening the ontogeny and evolution of trochozoans
inferred← citeshttps://doi.org/10.1073/pnas.1311818110openalex-snapshot
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages
inferred← citeshttps://doi.org/10.1073/pnas.1603718113openalex-snapshot
Origin and evolution of developmental enhancers in the mammalian neocortex
inferred← citeshttps://doi.org/10.1086/710210openalex-snapshot
Multiple Environmental Stressors Induce an Adaptive Maternal Effect
inferred← citeshttps://doi.org/10.1088/0953-8984/28/46/460301openalex-snapshot
Two tributaries of the electrical double layer
inferred← citeshttps://doi.org/10.1089/cmb.2021.0349openalex-snapshot
Cross-Organ Transcriptomic Comparison Reveals Universal Factors During Maturation
inferred← citeshttps://doi.org/10.1093/aob/mcw024openalex-snapshot
Convergent occurrence of the developmental hourglass in plant and animal embryogenesis?
inferred← citeshttps://doi.org/10.1093/bfgp/elv032openalex-snapshot
Toward understanding the evolution of vertebrate gene regulatory networks: comparative genomics and epigenomic approaches
inferred← citeshttps://doi.org/10.1093/bioinformatics/btab735openalex-snapshot
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis
inferred← citeshttps://doi.org/10.1093/evlett/qrag042openalex-snapshot
Evolutionary expression patterns in developing biofilms of uropathogenic Escherichia coli reveal embryo-like features
inferred← citeshttps://doi.org/10.1093/gbe/evab160openalex-snapshot
Comparative Transcriptomics Reveals Distinct Patterns of Gene Expression Conservation through Vertebrate Embryogenesis
inferred← citeshttps://doi.org/10.1093/gbe/evu183openalex-snapshot
Conserved Temporal Patterns of MicroRNA Expression in Drosophila Support a Developmental Hourglass Model
inferred← citeshttps://doi.org/10.1093/gbe/evv018openalex-snapshot
Reinforcing the Egg-Timer: Recruitment of Novel Lophotrochozoa Homeobox Genes to Early and Late Development in the Pacific Oyster
inferred← citeshttps://doi.org/10.1093/gbe/evy177openalex-snapshot
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species
inferred← citeshttps://doi.org/10.1093/gbe/evz086openalex-snapshot
Adaptation and Conservation throughout the Drosophila melanogaster Life-Cycle
inferred← citeshttps://doi.org/10.1093/intimm/dxag039openalex-snapshot
Emergence and divergence of blood cell lineages in the history of animal evolution
inferred← citeshttps://doi.org/10.1093/molbev/msaa217openalex-snapshot
Embryo-Like Features in Developing Bacillus subtilis Biofilms
inferred← citeshttps://doi.org/10.1093/molbev/msac036openalex-snapshot
The Toggle Switch Model for Gene Expression Change during the Prenatal-to-Postnatal Transition in Mammals
inferred← citeshttps://doi.org/10.1093/molbev/msae178openalex-snapshot
A Quantitative Computational Framework for Allopolyploid Single-Cell Data Integration and Core Gene Ranking in Development
inferred← citeshttps://doi.org/10.1093/molbev/mst007openalex-snapshot
Dictyostelium Development Shows a Novel Pattern of Evolutionary Conservation
inferred← citeshttps://doi.org/10.1093/molbev/msv012openalex-snapshot
Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis
inferred← citeshttps://doi.org/10.1093/molbev/msv047openalex-snapshot
A “Developmental Hourglass” in Fungi
inferred← citeshttps://doi.org/10.1093/molbev/msw039openalex-snapshot
Post-embryonic Hourglass Patterns Mark Ontogenetic Transitions in Plant Development
inferred← citeshttps://doi.org/10.1093/molbev/msy175openalex-snapshot
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo
inferred← citeshttps://doi.org/10.1093/mollus/eyv003openalex-snapshot
A new deep-sea genus of the family Polyceridae (Nudibranchia) possesses a gill cavity, with implications for the cryptobranch condition and a ‘Periodic Table’ approach to taxonomy
inferred← citeshttps://doi.org/10.1093/toxsci/kfad078openalex-snapshot
Identification of an adverse outcome pathway (AOP) for chemical-induced craniofacial anomalies using the transgenic zebrafish model
inferred← citeshttps://doi.org/10.1093/toxsci/kfr343openalex-snapshot
Transcriptomic Analysis of Neurulation and Early Organogenesis in Rat Embryos: An In Vivo and Ex Vivo Comparison
inferred← citeshttps://doi.org/10.1098/rsob.190285openalex-snapshot
The origin and evolution of vertebrate neural crest cells
inferred← citeshttps://doi.org/10.1098/rspb.2018.2389openalex-snapshot
Heterochronic shifts and conserved embryonic shape underlie crocodylian craniofacial disparity and convergence
inferred← citeshttps://doi.org/10.1098/rspb.2022.1928openalex-snapshot
Timing of organogenesis underscores the evolution of neonatal life histories and powered flight in bats
inferred← citeshttps://doi.org/10.1098/rspb.2023.1158openalex-snapshot
Pre-mandibular pharyngeal pouches in early non-teleost fish embryos
inferred← citeshttps://doi.org/10.1098/rspb.2026.0426openalex-snapshot
Protocol waists and the developmental hourglass
inferred← citeshttps://doi.org/10.1098/rstb.2013.0020openalex-snapshot
Deep conservation of cis -regulatory elements in metazoans
inferred← citeshttps://doi.org/10.1098/rstb.2019.0347openalex-snapshot
Transposable elements as a potent source of diverse cis -regulatory sequences in mammalian genomes
inferred← citeshttps://doi.org/10.1098/rstb.2022.0080openalex-snapshot
Evolutionary mechanisms modulating the mammalian skull development
inferred← citeshttps://doi.org/10.1101/007252openalex-snapshot
Conservation of expression regulation throughout the animal kingdom
inferred← citeshttps://doi.org/10.1101/051565openalex-snapshot
Capturing Evolutionary Signatures in Transcriptomes with myTAI
inferred← citeshttps://doi.org/10.1101/161711openalex-snapshot
Adaptive evolution of animal proteins over development: support for the Darwin selection opportunity hypothesis of Evo-Devo
inferred← citeshttps://doi.org/10.1101/2020.08.25.265843openalex-snapshot
Gene expression patterns in chordate embryonic development suggest partial applicability of Haeckel’s postulates
inferred← citeshttps://doi.org/10.1101/2021.06.08.447626openalex-snapshot
Systematic reconstruction of the cellular trajectories of mammalian embryogenesis
inferred← citeshttps://doi.org/10.1101/2023.08.18.553877openalex-snapshot
The role of heterochronic gene expression and regulatory architecture in early developmental divergence
inferred← citeshttps://doi.org/10.1101/2024.06.27.600990openalex-snapshot
Parallelism between phylogeny and ontogeny
inferred← citeshttps://doi.org/10.1101/2024.07.02.601774openalex-snapshot
Induction of ectopic external gills and tetrapodomorph-like skeletal elements through homeotic transformations in the salamander branchial region
inferred← citeshttps://doi.org/10.1101/2025.01.23.634446openalex-snapshot
Inverse hourglass pattern of conservation in rodent molar development
inferred← citeshttps://doi.org/10.1101/2025.03.10.642424openalex-snapshot
Double stranded RNA sensing drives interferon silencing in early development
inferred← citeshttps://doi.org/10.1101/2025.10.23.683873openalex-snapshot
Axial Rotation Comprises Concurrent Twisting and Bending, Each Differentially Regulated by TGF-β Signaling
inferred← citeshttps://doi.org/10.1101/2025.10.29.684766openalex-snapshot
A dual genetic constraint underlies the conservation of early brains in vertebrates
inferred← citeshttps://doi.org/10.1101/481309openalex-snapshot
Evolutionary transition in accessible chromatin landscapes during vertebrate embryogenesis
inferred← citeshttps://doi.org/10.1101/700997openalex-snapshot
Selection against expression noise explains the origin of the hourglass pattern of Evo-Devo
inferred← citeshttps://doi.org/10.1101/gad.215376.113openalex-snapshot
Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts
inferred← citeshttps://doi.org/10.1101/gr.134833.111openalex-snapshot
Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis
inferred← citeshttps://doi.org/10.1101/gr.163915.113openalex-snapshot
Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period
inferred← citeshttps://doi.org/10.1101/gr.170100.113openalex-snapshot
Comparison of D. melanogaster and C. elegans developmental stages, tissues, and cells by modENCODE RNA-seq data
inferred← citeshttps://doi.org/10.1101/gr.275212.121openalex-snapshot
The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection
inferred← citeshttps://doi.org/10.1109/bibm.2012.6392729openalex-snapshot
Systematic measurement of missmatch effect for designing inter-species microarray
inferred← citeshttps://doi.org/10.1109/jbhi.2021.3085313openalex-snapshot
Metabolic and Transcriptional Analysis of Recombinant Saccharomyces Cerevisiae for Xylose Fermentation: A Feasible and Efficient Approach
inferred← citeshttps://doi.org/10.1111/brv.12117openalex-snapshot
Pluripotency in the light of the developmental hourglass
inferred← citeshttps://doi.org/10.1111/brv.12194openalex-snapshot
The evolution of an annual life cycle in killifish: adaptation to ephemeral aquatic environments through embryonic diapause
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