On the public citation graph

Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

https://doi.org/10.1101/013490
0 signed · 57 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0022-2836(80)90196-5openalex-snapshot
Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing
inferredcites →https://doi.org/10.1038/nature13907openalex-snapshot
Resolving the complexity of the human genome using single-molecule sequencing
inferredcites →https://doi.org/10.1038/nbt.2280openalex-snapshot
Hybrid error correction and de novo assembly of single-molecule sequencing reads
inferredcites →https://doi.org/10.1038/nbt0412-295openalex-snapshot
Oxford Nanopore announcement sets sequencing sector abuzz
inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
inferredcites →https://doi.org/10.1038/nnano.2009.12openalex-snapshot
Continuous base identification for single-molecule nanopore DNA sequencing
inferredcites →https://doi.org/10.1038/nnano.2011.129openalex-snapshot
Nanopore sensors for nucleic acid analysis
inferredcites →https://doi.org/10.1073/pnas.0901054106openalex-snapshot
Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
inferredcites →https://doi.org/10.1073/pnas.1310615110openalex-snapshot
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
inferredcites →https://doi.org/10.1073/pnas.74.12.5463openalex-snapshot
DNA sequencing with chain-terminating inhibitors
inferredcites →https://doi.org/10.1073/pnas.74.2.560openalex-snapshot
A new method for sequencing DNA.
inferredcites →https://doi.org/10.1073/pnas.93.24.13770openalex-snapshot
Characterization of individual polynucleotide molecules using a membrane channel
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu555openalex-snapshot
Poretools: a toolkit for analyzing nanopore sequence data
inferredcites →https://doi.org/10.1101/006395openalex-snapshot
Error correction and assembly complexity of single molecule sequencing reads
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164359openalex-snapshot
Next-Generation DNA Sequencing Methods
inferredcites →https://doi.org/10.1166/jnn.2013.7756openalex-snapshot
Advances in Nanopore Sequencing Technology
inferredcites →https://doi.org/10.1186/2047-217x-3-22openalex-snapshot
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/7397_2016_16openalex-snapshot
Emerging Genomics of Angiosperm Trees
inferred← citeshttps://doi.org/10.1016/j.bdq.2015.02.001openalex-snapshot
Assessing the performance of the Oxford Nanopore Technologies MinION
inferred← citeshttps://doi.org/10.1016/j.cois.2015.02.013openalex-snapshot
Best practices in insect genome sequencing: what works and what doesn’t
inferred← citeshttps://doi.org/10.1016/j.cois.2015.05.003openalex-snapshot
Heterochromatin, histone modifications, and nuclear architecture in disease vectors
inferred← citeshttps://doi.org/10.1016/j.plantsci.2015.09.017openalex-snapshot
Effects of genome structure variation, homeologous genes and repetitive DNA on polyploid crop research in the age of genomics
inferred← citeshttps://doi.org/10.1038/nbt.3897openalex-snapshot
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
inferred← citeshttps://doi.org/10.1038/ncomms11307openalex-snapshot
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
inferred← citeshttps://doi.org/10.1038/nmeth.3444openalex-snapshot
A complete bacterial genome assembled de novo using only nanopore sequencing data
inferred← citeshttps://doi.org/10.1038/nmeth.3625openalex-snapshot
Nanopores: a sequencer in your backpack
inferred← citeshttps://doi.org/10.1038/s41598-017-08461-5openalex-snapshot
Field-based species identification of closely-related plants using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1038/srep11996openalex-snapshot
Scaffolding of a bacterial genome using MinION nanopore sequencing
inferred← citeshttps://doi.org/10.1080/15384047.2016.1139236openalex-snapshot
Nanopore sequencing detects structural variants in cancer
inferred← citeshttps://doi.org/10.1093/bib/bbv029openalex-snapshot
Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv688openalex-snapshot
hybrid SPA des : an algorithm for hybrid assembly of short and long reads
inferred← citeshttps://doi.org/10.1093/nar/gkw654openalex-snapshot
Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
inferred← citeshttps://doi.org/10.1093/nar/gkx511openalex-snapshot
COSINE: non-seeding method for mapping long noisy sequences
inferred← citeshttps://doi.org/10.1101/019281openalex-snapshot
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION
inferred← citeshttps://doi.org/10.1101/027284openalex-snapshot
Conversion of Genomic DNA to Proxy Constructs Suitable for Accurate Nanopore Sequencing
inferred← citeshttps://doi.org/10.1101/107656openalex-snapshot
Field-based species identification in eukaryotes using real-time nanopore sequencing
inferred← citeshttps://doi.org/10.1101/gr.193474.115openalex-snapshot
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
inferred← citeshttps://doi.org/10.1109/bibm.2015.7359962openalex-snapshot
Error correction and DeNovo genome Assembly for the MinIon sequencing reads mixing Illumina short reads
inferred← citeshttps://doi.org/10.1109/bibm.2016.7822504openalex-snapshot
Hybrid error correction approach and de novo assembly for minion sequencing long reads
inferred← citeshttps://doi.org/10.1109/dexa.2016.032openalex-snapshot
Efficient Hybrid De Novo Error Correction and Assembly for Long Reads
inferred← citeshttps://doi.org/10.1111/mec.13304openalex-snapshot
Targeted capture in evolutionary and ecological genomics
inferred← citeshttps://doi.org/10.1155/2016/5284786openalex-snapshot
Solid-State Nanopore-Based DNA Sequencing Technology
inferred← citeshttps://doi.org/10.11606/t.11.2019.tde-12092019-153123openalex-snapshot
Novel Bayesian networks for genomic prediction of developmental traits in biomass sorghum
inferred← citeshttps://doi.org/10.1186/s12864-015-1859-8openalex-snapshot
Is the whole greater than the sum of its parts? De novo assembly strategies for bacterial genomes based on paired-end sequencing
inferred← citeshttps://doi.org/10.1186/s13059-019-1774-4openalex-snapshot
Is it time to change the reference genome?
inferred← citeshttps://doi.org/10.1186/s13073-015-0220-9openalex-snapshot
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
inferred← citeshttps://doi.org/10.1186/s13742-015-0076-3openalex-snapshot
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
inferred← citeshttps://doi.org/10.12688/f1000research.7201.1openalex-snapshot
MinION Analysis and Reference Consortium: Phase 1 data release and analysis
inferred← citeshttps://doi.org/10.1371/journal.pone.0142155openalex-snapshot
Osmium-Based Pyrimidine Contrast Tags for Enhanced Nanopore-Based DNA Base Discrimination
inferred← citeshttps://doi.org/10.1371/journal.pone.0178751openalex-snapshot
DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads
inferred← citeshttps://doi.org/10.3389/fmicb.2016.01521openalex-snapshot
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
inferred← citeshttps://doi.org/10.4995/thesis/10251/67630openalex-snapshot
Improved Error Correction of NGS Data
inferred← citeshttps://doi.org/10.5772/intechopen.107540openalex-snapshot
Revolution in Plant Genetic Resources
inferred← citeshttps://doi.org/10.7717/peerj.1441openalex-snapshot
Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.