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Error correction and assembly complexity of single molecule sequencing reads

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0888-7543(88)90007-9openalex-snapshot
Genomic mapping by fingerprinting random clones: A mathematical analysis
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A tutorial on support vector regression
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Data from pocket-sized genome sequencer unveiled
inferredcites →https://doi.org/10.1038/nature12211openalex-snapshot
The Norway spruce genome sequence and conifer genome evolution
inferredcites →https://doi.org/10.1038/nbt.2280openalex-snapshot
Hybrid error correction and de novo assembly of single-molecule sequencing reads
inferredcites →https://doi.org/10.1038/nbt.2705openalex-snapshot
A single-molecule long-read survey of the human transcriptome
inferredcites →https://doi.org/10.1038/nbt.2727openalex-snapshot
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
inferredcites →https://doi.org/10.1038/nbt.2768openalex-snapshot
High-throughput genome scaffolding from in vivo DNA interaction frequency
inferredcites →https://doi.org/10.1038/nbt.2833openalex-snapshot
Whole-genome haplotyping using long reads and statistical methods
inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
inferredcites →https://doi.org/10.1073/pnas.0903474106openalex-snapshot
The interaction of TIGIT with PVR and PVRL2 inhibits human NK cell cytotoxicity
inferredcites →https://doi.org/10.1073/pnas.1017351108openalex-snapshot
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
inferredcites →https://doi.org/10.1073/pnas.1220766110openalex-snapshot
Aluminum tolerance in maize is associated with higher MATE1 gene copy number
inferredcites →https://doi.org/10.1093/bioinformatics/bti1114openalex-snapshot
The fragment assembly string graph
inferredcites →https://doi.org/10.1093/bioinformatics/btn548openalex-snapshot
Aggressive assembly of pyrosequencing reads with mates
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.131383.111openalex-snapshot
GAGE: A critical evaluation of genome assemblies and assembly algorithms
inferredcites →https://doi.org/10.1145/1961189.1961199openalex-snapshot
LIBSVM
inferredcites →https://doi.org/10.1186/1471-2105-11-21openalex-snapshot
Assembly complexity of prokaryotic genomes using short reads
inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot
Versatile and open software for comparing large genomes
inferredcites →https://doi.org/10.1186/gb-2013-14-5-r51openalex-snapshot
Characterizing and measuring bias in sequence data
inferredcites →https://doi.org/10.1186/gb-2013-14-6-405openalex-snapshot
The advantages of SMRT sequencing
inferredcites →https://doi.org/10.1186/gb-2013-14-7-405openalex-snapshot
The advantages of SMRT sequencing
inferredcites →https://doi.org/10.7554/elife.00569openalex-snapshot
The genome sequence of the colonial chordate, Botryllus schlosseri

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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PhyloAln: A Convenient Reference-Based Tool to Align Sequences and High-Throughput Reads for Phylogeny and Evolution in the Omic Era
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A deep learning-based method enables the automatic and accurate assembly of chromosome-level genomes
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Targeted Genotyping of Variable Number Tandem Repeats with adVNTR
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Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
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The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
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Hybrid assembly with long and short reads improves discovery of gene family expansions
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Correcting palindromes in long reads after whole-genome amplification
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Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms
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A hybrid correcting method considering heterozygous variations by a comprehensive probabilistic model
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A comparative evaluation of hybrid error correction methods for error-prone long reads
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The SAMBA tool uses long reads to improve the contiguity of genome assemblies
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In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies
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Single-Molecule Sequencing of the Drosophila serrata Genome
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Correction de données de séquençage de troisième génération
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Peer Review #1 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.2/reviews/4openalex-snapshot
Peer Review #4 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.3/reviews/2openalex-snapshot
Peer Review #2 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.3)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.3/reviews/3openalex-snapshot
Peer Review #3 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.3)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.3/reviews/4openalex-snapshot
Peer Review #4 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.3)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.4/reviews/2openalex-snapshot
Peer Review #2 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.4)"
inferred← citeshttps://doi.org/10.7287/peerj.2016v0.4/reviews/3openalex-snapshot
Peer Review #3 of "Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads (v0.4)"
inferred← citeshttps://doi.org/10.7717/peerj.2016openalex-snapshot
Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads
inferred← citeshttps://doi.org/10.7868/s0016675817050137openalex-snapshot
ПОЛНОГЕНОМНОЕ СЕКВЕНИРОВАНИЕ ГЕНОМОВ ЭУКАРИОТ: ОТ СЕКВЕНИРОВАНИЯ ФРАГМЕНТОВ ДНК К СБОРКЕ ГЕНОМА, "Генетика"
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