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Transposable Element Evolution in the Allotetraploid Capsella bursa-pastoris

https://doi.org/10.1101/042325
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-642-31442-1openalex-snapshot
Polyploidy and Genome Evolution
inferredcites →https://doi.org/10.1007/978-3-642-31842-9_9openalex-snapshot
Responses of Transposable Elements to Polyploidy
inferredcites →https://doi.org/10.1007/978-3-7091-1130-7openalex-snapshot
Plant Genome Diversity Volume 1
inferredcites →https://doi.org/10.1007/978-3-7091-1160-4_19openalex-snapshot
Genome Size Diversity and Evolution in Land Plants
inferredcites →https://doi.org/10.1007/978-94-011-4156-7_16openalex-snapshot
Transposon dynamics and the breeding system
inferredcites →https://doi.org/10.1007/s00438-007-0226-0openalex-snapshot
Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)
inferredcites →https://doi.org/10.1016/b978-012301463-4/50004-8openalex-snapshot
Genome Size Evolution in Plants
inferredcites →https://doi.org/10.1016/j.cub.2006.09.020openalex-snapshot
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
inferredcites →https://doi.org/10.1016/j.pbi.2005.01.001openalex-snapshot
Polyploidy and genome evolution in plants
inferredcites →https://doi.org/10.1016/j.tplants.2015.03.007openalex-snapshot
Selfish genetic elements and plant genome size evolution
inferredcites →https://doi.org/10.1016/s0065-2296(08)60194-9openalex-snapshot
Plant Transposable Elements
inferredcites →https://doi.org/10.1016/s0959-437x(00)00254-9openalex-snapshot
Breeding systems and genome evolution
inferredcites →https://doi.org/10.1017/s0016672301005067openalex-snapshot
Transposable element number in mixed mating populations
inferredcites →https://doi.org/10.1023/a:1003953126700openalex-snapshot
Transposon dynamics and the breeding system
inferredcites →https://doi.org/10.1038/hdy.2011.47openalex-snapshot
Sizing up Arabidopsis genome evolution
inferredcites →https://doi.org/10.1038/nature06148openalex-snapshot
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/ng.2669openalex-snapshot
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
inferredcites →https://doi.org/10.1038/nrg3883openalex-snapshot
Beyond the thale: comparative genomics and genetics of Arabidopsis relatives
inferredcites →https://doi.org/10.1073/pnas.0401243101openalex-snapshot
Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
inferredcites →https://doi.org/10.1073/pnas.0807679106openalex-snapshot
Recent speciation associated with the evolution of selfing in Capsella
inferredcites →https://doi.org/10.1073/pnas.0808012106openalex-snapshot
Recent speciation of Capsella rubella from Capsella grandiflora , associated with loss of self-incompatibility and an extreme bottleneck
inferredcites →https://doi.org/10.1073/pnas.0904339106openalex-snapshot
Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants
inferredcites →https://doi.org/10.1073/pnas.1412277112openalex-snapshot
Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris
inferredcites →https://doi.org/10.1086/523367openalex-snapshot
Mating Consequences of Polyploid Evolution in Flowering Plants: Current Trends and Insights from Synthetic Polyploids
inferredcites →https://doi.org/10.1093/gbe/evr008openalex-snapshot
Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
inferredcites →https://doi.org/10.1093/molbev/msn223openalex-snapshot
The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae
inferredcites →https://doi.org/10.1093/molbev/msr112openalex-snapshot
Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs
inferredcites →https://doi.org/10.1098/rstb.2013.0352openalex-snapshot
Ecological studies of polyploidy in the 100 years following its discovery
inferredcites →https://doi.org/10.1098/rstb.2013.0354openalex-snapshot
The legacy of diploid progenitors in allopolyploid gene expression patterns
inferredcites →https://doi.org/10.1101/gr.157503.113openalex-snapshot
Comparative genomics as a tool to understand evolution and disease
inferredcites →https://doi.org/10.1101/gr.168997.113openalex-snapshot
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
inferredcites →https://doi.org/10.1104/pp.003095openalex-snapshot
Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids
inferredcites →https://doi.org/10.1111/evo.12627openalex-snapshot
No evidence that sex and transposable elements drive genome size variation in evening primroses
inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00349.xopenalex-snapshot
Genome downsizing in polyploid plants
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05460.xopenalex-snapshot
‘Missing link’ speciesCapsella orientalisandCapsella thracicaelucidate evolution of model plant genusCapsella(Brassicaceae)
inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02297.xopenalex-snapshot
Genomic changes in synthetic Arabidopsis polyploids
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03096.xopenalex-snapshot
Impact of transposable elements on the organization and function of allopolyploid genomes
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03140.xopenalex-snapshot
Mobilization of retrotransposons in synthetic allotetraploid tobacco
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01099.xopenalex-snapshot
COMPARATIVE EVIDENCE FOR THE CORRELATED EVOLUTION OF POLYPLOIDY AND SELF-COMPATIBILITY IN SOLANACEAE
inferredcites →https://doi.org/10.1111/nph.12939openalex-snapshot
Polyploidy: adaptation to the genomic environment
inferredcites →https://doi.org/10.1111/tpj.12168openalex-snapshot
Diploidization and genome size change in allopolyploids is associated with differential dynamics of low‐ and high‐copy sequences
inferredcites →https://doi.org/10.1126/sciadv.1501084openalex-snapshot
Early genome duplications in conifers and other seed plants
inferredcites →https://doi.org/10.1126/science.1178534openalex-snapshot
The B73 Maize Genome: Complexity, Diversity, and Dynamics
inferredcites →https://doi.org/10.1126/science.290.5499.2114openalex-snapshot
The Origins of Genomic Duplications in Arabidopsis
inferredcites →https://doi.org/10.1186/1471-2164-15-602openalex-snapshot
Mating system shifts and transposable element evolution in the plant genus Capsella
inferredcites →https://doi.org/10.1371/journal.pgen.1000732openalex-snapshot
Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1002487openalex-snapshot
Sequencing of Pooled DNA Samples (Pool-Seq) Uncovers Complex Dynamics of Transposable Element Insertions in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003754openalex-snapshot
Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella
inferredcites →https://doi.org/10.1371/journal.pgen.1004298openalex-snapshot
Three Groups of Transposable Elements with Contrasting Copy Number Dynamics and Host Responses in the Maize (Zea mays ssp. mays) Genome
inferredcites →https://doi.org/10.1534/genetics.110.120790openalex-snapshot
Genetic and Epigenetic Dynamics of a Retrotransposon After Allopolyploidization of Wheat
inferredcites →https://doi.org/10.5860/choice.45-0862openalex-snapshot
The origins of genome architecture

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1101/044016openalex-snapshot
The role of transposable elements for gene expression in Capsella hybrids and allopolyploids
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