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Does linked selection explain the narrow range of genetic diversity across species?

https://doi.org/10.1101/042598
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4615-2383-3_1openalex-snapshot
Alternatives to the Neutral Theory
inferredcites →https://doi.org/10.1016/0040-5809(92)90045-uopenalex-snapshot
The effect of strongly selected substitutions on neutral polymorphism: Analytical results based on diffusion theory
inferredcites →https://doi.org/10.1016/s0378-1119(97)00470-8openalex-snapshot
Junk ain't what junk does: neutral alleles in a selected context
inferredcites →https://doi.org/10.1016/s0959-437x(00)00254-9openalex-snapshot
Breeding systems and genome evolution
inferredcites →https://doi.org/10.1017/s0016672300000690openalex-snapshot
Inbreeding in artificial selection programmes
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672300033619openalex-snapshot
The effect of recombination on background selection
inferredcites →https://doi.org/10.1017/s0016672308009452openalex-snapshot
Inbreeding in artificial selection programmes
inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672397002954openalex-snapshot
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
inferredcites →https://doi.org/10.1038/356519a0openalex-snapshot
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
inferredcites →https://doi.org/10.1038/nplants.2016.84openalex-snapshot
Recent demography drives changes in linked selection across the maize genome
inferredcites →https://doi.org/10.1038/nrg2526openalex-snapshot
Effective population size and patterns of molecular evolution and variation
inferredcites →https://doi.org/10.1038/nrg3425openalex-snapshot
Genomic signatures of selection at linked sites: unifying the disparity among species
inferredcites →https://doi.org/10.1073/pnas.1309697110openalex-snapshot
Coalescence and genetic diversity in sexual populations under selection
inferredcites →https://doi.org/10.1093/genetics/122.3.607openalex-snapshot
Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster.
inferredcites →https://doi.org/10.1093/genetics/123.4.887openalex-snapshot
The "hitchhiking effect" revisited.
inferredcites →https://doi.org/10.1093/genetics/139.2.1013openalex-snapshot
Effective size of populations under selection.
inferredcites →https://doi.org/10.1093/genetics/141.4.1605openalex-snapshot
Deleterious background selection with recombination.
inferredcites →https://doi.org/10.1093/genetics/141.4.1619openalex-snapshot
The pattern of neutral molecular variation under the background selection model.
inferredcites →https://doi.org/10.1093/genetics/146.4.1501openalex-snapshot
Structured Coalescent Processes on Different Time Scales
inferredcites →https://doi.org/10.1093/genetics/149.4.2105openalex-snapshot
Effective Size and Polymorphism of Linked Neutral Loci in Populations Under Directional Selection
inferredcites →https://doi.org/10.1093/genetics/155.2.909openalex-snapshot
Genetic Drift in an Infinite Population: The Pseudohitchhiking Model
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040046openalex-snapshot
Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster.
inferredcites →https://doi.org/10.1098/rstb.1995.0086openalex-snapshot
The coalescent process and background selection
inferredcites →https://doi.org/10.1098/rstb.2000.0716openalex-snapshot
Genetic hitchhiking
inferredcites →https://doi.org/10.1101/gr.074187.107openalex-snapshot
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
inferredcites →https://doi.org/10.1101/gr.104331.109openalex-snapshot
Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae
inferredcites →https://doi.org/10.1101/gr.6691007openalex-snapshot
Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
inferredcites →https://doi.org/10.1111/j.1558-5646.1975.tb00851.xopenalex-snapshot
THE GENETIC BASIS OF EVOLUTIONARY CHANGE
inferredcites →https://doi.org/10.1126/science.1198878openalex-snapshot
Classic Selective Sweeps Were Rare in Recent Human Evolution
inferredcites →https://doi.org/10.1371/journal.pbio.1001388openalex-snapshot
Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?
inferredcites →https://doi.org/10.1371/journal.pbio.1002112openalex-snapshot
Natural Selection Constrains Neutral Diversity across A Wide Range of Species
inferredcites →https://doi.org/10.1371/journal.pgen.1000336openalex-snapshot
Pervasive Hitchhiking at Coding and Regulatory Sites in Humans
inferredcites →https://doi.org/10.1371/journal.pgen.1000471openalex-snapshot
Widespread Genomic Signatures of Natural Selection in Hominid Evolution
inferredcites →https://doi.org/10.1371/journal.pgen.1001302openalex-snapshot
Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans
inferredcites →https://doi.org/10.1371/journal.pgen.1004222openalex-snapshot
Genetic Diversity in the Interference Selection Limit
inferredcites →https://doi.org/10.1371/journal.pgen.1004434openalex-snapshot
Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1006130openalex-snapshot
A Genomic Map of the Effects of Linked Selection in Drosophila
inferredcites →https://doi.org/10.1534/genetics.107.080226openalex-snapshot
Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila
inferredcites →https://doi.org/10.1534/genetics.112.141861openalex-snapshot
Patterns of Neutral Diversity Under General Models of Selective Sweeps

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.10707openalex-snapshot
Determinants of genetic diversity in Neotropical salamanders (Plethodontidae: Bolitoglossini)
inferred← citeshttps://doi.org/10.1002/ece3.5463openalex-snapshot
Impact of demography on linked selection in two outcrossing Brassicaceae species
inferred← citeshttps://doi.org/10.1007/978-1-4939-9074-0_11openalex-snapshot
Genome Evolution in Outcrossing vs. Selfing vs. Asexual Species
inferred← citeshttps://doi.org/10.1016/j.pbi.2020.03.003openalex-snapshot
Evolutionary insights into plant breeding
inferred← citeshttps://doi.org/10.1038/nature.2017.21333openalex-snapshot
When a preprint becomes the final paper
inferred← citeshttps://doi.org/10.1038/nrg.2016.133openalex-snapshot
Making sense of genomic islands of differentiation in light of speciation
inferred← citeshttps://doi.org/10.1038/nrg.2016.58openalex-snapshot
Determinants of genetic diversity
inferred← citeshttps://doi.org/10.1038/s41467-019-11308-4openalex-snapshot
The determinants of genetic diversity in butterflies
inferred← citeshttps://doi.org/10.1038/s41559-019-0890-6openalex-snapshot
Exploiting selection at linked sites to infer the rate and strength of adaptation
inferred← citeshttps://doi.org/10.1038/s41559-020-1215-5openalex-snapshot
Determinants of genetic variation across eco-evolutionary scales in pinnipeds
inferred← citeshttps://doi.org/10.1038/s41586-024-07834-xopenalex-snapshot
Continuously fluctuating selection reveals fine granularity of adaptation
inferred← citeshttps://doi.org/10.1073/pnas.1919039117openalex-snapshot
Estimating the genome-wide contribution of selection to temporal allele frequency change
inferred← citeshttps://doi.org/10.1073/pnas.2312377121openalex-snapshot
The contribution of gene flow, selection, and genetic drift to five thousand years of human allele frequency change
inferred← citeshttps://doi.org/10.1073/pnas.2505642123openalex-snapshot
Pleistocene demographic histories dominate contemporary genomic diversity in a continental radiation of Himalayan–Hengduan songbirds
inferred← citeshttps://doi.org/10.1073/pnas.2513613123openalex-snapshot
Background selection in recombining genomes and its consequences for the maintenance of variation in complex traits
inferred← citeshttps://doi.org/10.1093/evlett/qraf011openalex-snapshot
k-mer-based diversity scales with population size proxies more than nucleotide diversity in a meta-analysis of 98 plant species
inferred← citeshttps://doi.org/10.1093/g3journal/jkag252openalex-snapshot
Seasonal fluctuations in fitness result in severe reductions in effective population size
inferred← citeshttps://doi.org/10.1093/gbe/evaa057openalex-snapshot
Recombination Rate Variation and Infrequent Sex Influence Genetic Diversity in Chlamydomonas reinhardtii
inferred← citeshttps://doi.org/10.1093/gbe/evab064openalex-snapshot
The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
inferred← citeshttps://doi.org/10.1093/gbe/evac096openalex-snapshot
How Can We Resolve Lewontin’s Paradox?
inferred← citeshttps://doi.org/10.1093/gbe/evad064openalex-snapshot
What Determines Levels of Mitochondrial Genetic Diversity in Birds?
inferred← citeshttps://doi.org/10.1093/gbe/evy194openalex-snapshot
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata
inferred← citeshttps://doi.org/10.1093/genetics/iyae211openalex-snapshot
Allele ages provide limited information about the strength of negative selection
inferred← citeshttps://doi.org/10.1093/molbev/msag004openalex-snapshot
Estimating the Reduction in Genetic Diversity from Background Selection under Non-equilibrium Demography and Partial Selfing
inferred← citeshttps://doi.org/10.1093/molbev/msw215openalex-snapshot
Natural Selection in the Great Apes
inferred← citeshttps://doi.org/10.1093/molbev/msx088openalex-snapshot
Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species
inferred← citeshttps://doi.org/10.1093/molbev/msy195openalex-snapshot
Extreme Lewontin’s Paradox in Ubiquitous Marine Phytoplankton Species
inferred← citeshttps://doi.org/10.1098/rspb.2016.2588openalex-snapshot
Genetic diversity is largely unpredictable but scales with museum occurrences in a species-rich clade of Australian lizards
inferred← citeshttps://doi.org/10.1101/2021.02.03.429633openalex-snapshot
Natural Selection is Unlikely to Explain Why Species Get a Thin Slice of π
inferred← citeshttps://doi.org/10.1101/2022.12.13.520296openalex-snapshot
Genetic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes
inferred← citeshttps://doi.org/10.1101/2023.03.16.532584openalex-snapshot
Mating systems and recombination landscape strongly shape genetic diversity and selection in wheat relatives
inferred← citeshttps://doi.org/10.1101/2023.03.17.533073openalex-snapshot
Determinants of genetic diversity in sticklebacks
inferred← citeshttps://doi.org/10.1101/2023.10.16.562586openalex-snapshot
Continuously fluctuating selection reveals extreme granularity and parallelism of adaptive tracking
inferred← citeshttps://doi.org/10.1101/2024.05.17.594778openalex-snapshot
Previously unmeasured genetic diversity explains part of Lewontin’s paradox in a k -mer-based meta-analysis of 112 plant species
inferred← citeshttps://doi.org/10.1101/534123openalex-snapshot
The determinants of genetic diversity in butterflies – Lewontin’s paradox revisited
inferred← citeshttps://doi.org/10.1111/1755-0998.13371openalex-snapshot
A population‐genomic approach for estimating selection on polygenic traits in heterogeneous environments
inferred← citeshttps://doi.org/10.1111/mec.14195openalex-snapshot
Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa
inferred← citeshttps://doi.org/10.1111/mec.16093openalex-snapshot
Genetic diversity in a restricted‐dispersal kissing bug: The centre–periphery hypothesis halfway
inferred← citeshttps://doi.org/10.1111/mec.16111openalex-snapshot
Genomic time‐series data show that gene flow maintains high genetic diversity despite substantial genetic drift in a butterfly species
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006240openalex-snapshot
On the Trail of Linked Selection
inferred← citeshttps://doi.org/10.1371/journal.pgen.1007387openalex-snapshot
Human demographic history has amplified the effects of background selection across the genome
inferred← citeshttps://doi.org/10.1371/journal.pgen.1008668openalex-snapshot
Is adaptation limited by mutation? A timescale-dependent effect of genetic diversity on the adaptive substitution rate in animals
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010879openalex-snapshot
Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes
inferred← citeshttps://doi.org/10.1534/g3.116.038497openalex-snapshot
A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity
inferred← citeshttps://doi.org/10.1534/genetics.116.188250openalex-snapshot
Joint Prediction of the Effective Population Size and the Rate of Fixation of Deleterious Mutations
inferred← citeshttps://doi.org/10.1534/genetics.119.302581openalex-snapshot
The Linked Selection Signature of Rapid Adaptation in Temporal Genomic Data
inferred← citeshttps://doi.org/10.1534/genetics.119.302869openalex-snapshot
From Drift to Draft: How Much Do Beneficial Mutations Actually Contribute to Predictions of Ohta’s Slightly Deleterious Model of Molecular Evolution?
inferred← citeshttps://doi.org/10.1534/genetics.119.302892openalex-snapshot
The Temporal Dynamics of Background Selection in Nonequilibrium Populations
inferred← citeshttps://doi.org/10.1534/genetics.120.303469openalex-snapshot
Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps
inferred← citeshttps://doi.org/10.1534/genetics.120.303622openalex-snapshot
How Much Does Ne Vary Among Species?
inferred← citeshttps://doi.org/10.31220/osf.io/akdt8openalex-snapshot
Evolutionary insights into plant breeding
inferred← citeshttps://doi.org/10.64898/2026.08.04.742829openalex-snapshot
The Genome-Wide Effect of Drift and Selection over a Single Generation
inferred← citeshttps://doi.org/10.7554/elife.67509openalex-snapshot
Quantifying the relationship between genetic diversity and population size suggests natural selection cannot explain Lewontin’s Paradox
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