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Classic Selective Sweeps Were Rare in Recent Human Evolution

https://doi.org/10.1126/science.1198878

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cub.2009.11.055openalex-snapshot

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot

The hitch-hiking effect of a favourable gene

inferredcites →https://doi.org/10.1017/s0016672308009579openalex-snapshot

The hitch-hiking effect of a favourable gene

inferredcites →https://doi.org/10.1017/s0016672397002954openalex-snapshot

The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations

inferredcites →https://doi.org/10.1038/nature04789openalex-snapshot

Genetic evidence for complex speciation of humans and chimpanzees

inferredcites →https://doi.org/10.1038/nature06250openalex-snapshot

Genome-wide detection and characterization of positive selection in human populations

inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot

A map of human genome variation from population-scale sequencing

inferredcites →https://doi.org/10.1038/ng.651openalex-snapshot

The ratio of human X chromosome to autosome diversity is positively correlated with genetic distance from genes

inferredcites →https://doi.org/10.1038/ng.78openalex-snapshot

Natural selection has driven population differentiation in modern humans

inferredcites →https://doi.org/10.1038/ng2123openalex-snapshot

Diet and the evolution of human amylase gene copy number variation

inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot

The effect of deleterious mutations on neutral molecular variation.

inferredcites →https://doi.org/10.1093/genetics/139.2.1013openalex-snapshot

Effective size of populations under selection.

inferredcites →https://doi.org/10.1093/genetics/149.4.2099openalex-snapshot

Testing Natural Selection vs. Genetic Drift in Phenotypic Evolution Using Quantitative Trait Locus Data

inferredcites →https://doi.org/10.1093/genetics/160.3.1179openalex-snapshot

The Signature of Positive Selection at Randomly Chosen Loci

inferredcites →https://doi.org/10.1093/molbev/msp119openalex-snapshot

Estimating the Rate of Adaptive Molecular Evolution in the Presence of Slightly Deleterious Mutations and Population Size Change

inferredcites →https://doi.org/10.1101/gr.074187.107openalex-snapshot

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

inferredcites →https://doi.org/10.1101/gr.086652.108openalex-snapshot

Constructing genomic maps of positive selection in humans: Where do we go from here?

inferredcites →https://doi.org/10.1101/gr.5105206openalex-snapshot

How reliable are empirical genomic scans for selective sweeps?

inferredcites →https://doi.org/10.1126/science.1124309openalex-snapshot

Positive Natural Selection in the Human Lineage

inferredcites →https://doi.org/10.1371/journal.pgen.0030090openalex-snapshot

Localizing Recent Adaptive Evolution in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pgen.1000083openalex-snapshot

Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome

inferredcites →https://doi.org/10.1371/journal.pgen.1000214openalex-snapshot

High-Resolution Mapping of Expression-QTLs Yields Insight into Human Gene Regulation

inferredcites →https://doi.org/10.1371/journal.pgen.1000336openalex-snapshot

Pervasive Hitchhiking at Coding and Regulatory Sites in Humans

inferredcites →https://doi.org/10.1371/journal.pgen.1000471openalex-snapshot

Widespread Genomic Signatures of Natural Selection in Hominid Evolution

inferredcites →https://doi.org/10.1371/journal.pgen.1000500openalex-snapshot

The Role of Geography in Human Adaptation

inferredcites →https://doi.org/10.1371/journal.pgen.1000592openalex-snapshot

Evolutionary Processes Acting on Candidate cis-Regulatory Regions in Humans Inferred from Patterns of Polymorphism and Divergence

inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

inferredcites →https://doi.org/10.1371/journal.pgen.1000886openalex-snapshot

Human Population Differentiation Is Strongly Correlated with Local Recombination Rate

inferredcites →https://doi.org/10.1371/journal.pgen.1001302openalex-snapshot

Pervasive Adaptive Protein Evolution Apparent in Diversity Patterns around Amino Acid Substitutions in Drosophila simulans

inferredcites →https://doi.org/10.1534/genetics.104.032813openalex-snapshot

Variation After a Selective Sweep in a Subdivided Population

inferredcites →https://doi.org/10.1534/genetics.104.036947openalex-snapshot

Soft Sweeps

inferredcites →https://doi.org/10.1534/genetics.108.086835openalex-snapshot

Detecting Local Adaptation Using the Joint Sampling of Polymorphism Data in the Parental and Derived Populations

inferredcites →https://doi.org/10.1534/genetics.110.119594openalex-snapshot

Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?

inferredcites →https://doi.org/10.1554/05-273.1openalex-snapshot

THE SIGNATURE OF POSITIVE SELECTION ON STANDING GENETIC VARIATION

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inferred← citeshttps://doi.org/10.1093/gbe/evag075openalex-snapshot

Identifying Adaptive Footprints in the Presence of Demographic Uncertainty

inferred← citeshttps://doi.org/10.1093/gbe/evag085openalex-snapshot

Detecting Positive Selection by Modeling Structure Within Images of Genetic Variation

inferred← citeshttps://doi.org/10.1093/gbe/evag164openalex-snapshot

Genomic Evidence for Natural Selection Underlying High-Altitude Adaptive Hemoglobin Levels Among Peruvian Andeans

inferred← citeshttps://doi.org/10.1093/gbe/evu270openalex-snapshot

Recent Coselection in Human Populations Revealed by Protein–Protein Interaction Network

inferred← citeshttps://doi.org/10.1093/gbe/evv012openalex-snapshot

The Role of DNA Insertions in Phenotypic Differentiation between Humans and Other Primates

inferred← citeshttps://doi.org/10.1093/gbe/evv055openalex-snapshot

Recent Positive Selection Has Acted on Genes Encoding Proteins with More Interactions within the Whole Human Interactome

inferred← citeshttps://doi.org/10.1093/gbe/evv083openalex-snapshot

Inference of Evolutionary Forces Acting on Human Biological Pathways

inferred← citeshttps://doi.org/10.1093/gbe/evv155openalex-snapshot

Assessing Recent Selection and Functionality at Long Noncoding RNA Loci in the Mouse Genome

inferred← citeshttps://doi.org/10.1093/gbe/evv228openalex-snapshot

Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain

inferred← citeshttps://doi.org/10.1093/gbe/evv236openalex-snapshot

Extensive Admixture and Selective Pressure Across the Sahel Belt

inferred← citeshttps://doi.org/10.1093/gbe/evy142openalex-snapshot

Impacts of Recurrent Hitchhiking on Divergence and Demographic Inference in Drosophila

inferred← citeshttps://doi.org/10.1093/gbe/evy233openalex-snapshot

Evidence of polygenic adaptation to high altitude from Tibetan and Sherpa genomes

inferred← citeshttps://doi.org/10.1093/genetics/iyab094openalex-snapshot

Revisiting the notion of deleterious sweeps

inferred← citeshttps://doi.org/10.1093/genetics/iyab161openalex-snapshot

Sporadic occurrence of recent selective sweeps from standing variation in humans as revealed by an approximate Bayesian computation approach

inferred← citeshttps://doi.org/10.1093/genetics/iyae006openalex-snapshot

Shared evolutionary processes shape landscapes of genomic variation in the great apes

inferred← citeshttps://doi.org/10.1093/genetics/iyaf200openalex-snapshot

The impact of non-neutral synonymous mutations when inferring selection on nonsynonymous mutations

inferred← citeshttps://doi.org/10.1093/genetics/iyag222openalex-snapshot

Allelic gene conversion softens selective sweeps

inferred← citeshttps://doi.org/10.1093/hmg/ddr401openalex-snapshot

Africa: the next frontier for human disease gene discovery?

inferred← citeshttps://doi.org/10.1093/jhered/esr128openalex-snapshot

Recent Progress in Polymorphism-Based Population Genetic Inference

inferred← citeshttps://doi.org/10.1093/jhered/ess136openalex-snapshot

Background Selection 20 Years on

inferred← citeshttps://doi.org/10.1093/molbev/msaa115openalex-snapshot

A Likelihood Approach for Uncovering Selective Sweep Signatures from Haplotype Data

inferred← citeshttps://doi.org/10.1093/molbev/msaa179openalex-snapshot

Multiple Merger Genealogies in Outbreaks of Mycobacterium tuberculosis

inferred← citeshttps://doi.org/10.1093/molbev/msab050openalex-snapshot

The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects

inferred← citeshttps://doi.org/10.1093/molbev/msab290openalex-snapshot

Dietary, Cultural, and Pathogens-Related Selective Pressures Shaped Differential Adaptive Evolution among Native Mexican Populations

inferred← citeshttps://doi.org/10.1093/molbev/msab313openalex-snapshot

Similarity-Based Analysis of Allele Frequency Distribution among Multiple Populations Identifies Adaptive Genomic Structural Variants

inferred← citeshttps://doi.org/10.1093/molbev/msac248openalex-snapshot

Adaptation in Outbred Sexual Yeast is Repeatable, Polygenic and Favors Rare Haplotypes

inferred← citeshttps://doi.org/10.1093/molbev/msad139openalex-snapshot

Versatile Detection of Diverse Selective Sweeps with Flex-Sweep

inferred← citeshttps://doi.org/10.1093/molbev/msae034openalex-snapshot

Adaptive Selection of Cis-regulatory Elements in the Han Chinese

inferred← citeshttps://doi.org/10.1093/molbev/msae242openalex-snapshot

Digital Image Processing to Detect Adaptive Evolution

inferred← citeshttps://doi.org/10.1093/molbev/msag171openalex-snapshot

What has population genomics told us about the dynamics of selection and plant adaptation?

inferred← citeshttps://doi.org/10.1093/molbev/msr093openalex-snapshot

Positive and Negative Selection in Murine Ultraconserved Noncoding Elements

inferred← citeshttps://doi.org/10.1093/molbev/mss025openalex-snapshot

Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome

inferred← citeshttps://doi.org/10.1093/molbev/mss057openalex-snapshot

Impact of Genetic Architecture on the Relative Rates of X versus Autosomal Adaptive Substitution

inferred← citeshttps://doi.org/10.1093/molbev/mss329openalex-snapshot

Reproduction and Immunity-Driven Natural Selection in the Human WFDC Locus

inferred← citeshttps://doi.org/10.1093/molbev/mst080openalex-snapshot

Evidence for Polygenic Adaptation to Pathogens in the Human Genome

inferred← citeshttps://doi.org/10.1093/molbev/mst270openalex-snapshot

Differential Strengths of Positive Selection Revealed by Hitchhiking Effects at Small Physical Scales in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msu118openalex-snapshot

Exploring the Occurrence of Classic Selective Sweeps in Humans Using Whole-Genome Sequencing Data Sets

inferred← citeshttps://doi.org/10.1093/molbev/msu255openalex-snapshot

A Test for Ancient Selective Sweeps and an Application to Candidate Sites in Modern Humans

inferred← citeshttps://doi.org/10.1093/molbev/msu256openalex-snapshot

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae

inferred← citeshttps://doi.org/10.1093/molbev/msu270openalex-snapshot

Hsp90 Promotes Kinase Evolution

inferred← citeshttps://doi.org/10.1093/molbev/msv126openalex-snapshot

Recent Evolution in Rattus norvegicus Is Shaped by Declining Effective Population Size

inferred← citeshttps://doi.org/10.1093/molbev/msv136openalex-snapshot

Whole-Genome Resequencing of Experimental Populations Reveals Polygenic Basis of Egg-Size Variation in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msv199openalex-snapshot

Adaptive Evolution FavoringKLK4Downregulation in East Asians

inferred← citeshttps://doi.org/10.1093/molbev/msv248openalex-snapshot

Shared Genetic Signals of Hypoxia Adaptation in Drosophila and in High-Altitude Human Populations

inferred← citeshttps://doi.org/10.1093/molbev/msv334openalex-snapshot

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

inferred← citeshttps://doi.org/10.1093/molbev/msw036openalex-snapshot

R2d2 Drives Selfish Sweeps in the House Mouse

inferred← citeshttps://doi.org/10.1093/molbev/msx154openalex-snapshot

Soft Sweeps Are the Dominant Mode of Adaptation in the Human Genome

inferred← citeshttps://doi.org/10.1093/molbev/msx207openalex-snapshot

Multiple Modes of Positive Selection Shaping the Patterns of Incomplete Selective Sweeps over African Populations of Drosophila melanogaster

inferred← citeshttps://doi.org/10.1093/molbev/msy085openalex-snapshot

Neutral Theory, Disease Mutations, and Personal Exomes

inferred← citeshttps://doi.org/10.1093/molbev/msy107openalex-snapshot

Adaptive Landscape of Protein Variation in Human Exomes

inferred← citeshttps://doi.org/10.1093/molbev/msy145openalex-snapshot

The Role of Phylogenetically Conserved Elements in Shaping Patterns of Human Genomic Diversity

inferred← citeshttps://doi.org/10.1093/molbev/msy188openalex-snapshot

Understanding the factors that shape patterns of nucleotide diversity in the house mouse genome

inferred← citeshttps://doi.org/10.1093/molbev/msy211openalex-snapshot

Genomic Evidence of Local Adaptation to Climate and Diet in Indigenous Siberians

inferred← citeshttps://doi.org/10.1093/molbev/msz038openalex-snapshot

An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions

inferred← citeshttps://doi.org/10.1093/nar/gkt1188openalex-snapshot

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

inferred← citeshttps://doi.org/10.1093/obo/9780199941728-0112openalex-snapshot

Natural Selection in Human Populations

inferred← citeshttps://doi.org/10.1093/oso/9780198830870.003.0008openalex-snapshot

Hitchhiking and Selective Sweeps

inferred← citeshttps://doi.org/10.1098/rspb.2012.2322openalex-snapshot

The genomics of adaptation

inferred← citeshttps://doi.org/10.1098/rspb.2014.1369openalex-snapshot

Turnover and accumulation of genetic diversity across large time-scale cycles of isolation and connection of populations

inferred← citeshttps://doi.org/10.1098/rstb.2011.0249openalex-snapshot

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

inferred← citeshttps://doi.org/10.1098/rstb.2011.0305openalex-snapshot

Human population structure and the adaptive response to pathogen-induced selection pressures

inferred← citeshttps://doi.org/10.1098/rstb.2016.0465openalex-snapshot

The impact of recombination on human mutation load and disease

inferred← citeshttps://doi.org/10.1098/rstb.2020.0416openalex-snapshot

Population differentiation of polygenic score predictions under stabilizing selection

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