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qpMerge: Merging different peptide isoforms using a motif centric strategy

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/s1525-1578(10)60455-2openalex-snapshot

Analysis of Microarray Data Using Z Score Transformation

inferredcites →https://doi.org/10.1021/pr300992uopenalex-snapshot

An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics

inferredcites →https://doi.org/10.1038/nbt.1511openalex-snapshot

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

inferredcites →https://doi.org/10.1038/nmeth.2646openalex-snapshot

pLogo: a probabilistic approach to visualizing sequence motifs

inferredcites →https://doi.org/10.1074/mcp.m111.010587openalex-snapshot

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

inferredcites →https://doi.org/10.1074/mcp.m111.015974openalex-snapshot

msCompare: A Framework for Quantitative Analysis of Label-free LC-MS Data for Comparative Candidate Biomarker Studies

inferredcites →https://doi.org/10.1074/mcp.o113.028506openalex-snapshot

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics

inferredcites →https://doi.org/10.1093/biohorizons/hzq004openalex-snapshot

The identification of FGF-dependent phosphorylation events in embryonic stem cells using mass spectrometry

inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot

InterProScan 5: genome-scale protein function classification

inferredcites →https://doi.org/10.1093/nar/gkq429openalex-snapshot

myExperiment: a repository and social network for the sharing of bioinformatics workflows

inferredcites →https://doi.org/10.1186/1471-2121-14-46openalex-snapshot

Functional analysis of the rodent CK1tau mutation in the circadian clock of a marine unicellular alga

inferredcites →https://doi.org/10.1186/gb-2010-11-8-r86openalex-snapshot

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r37openalex-snapshot

Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors

inferredcites →https://doi.org/10.1371/journal.pone.0070021openalex-snapshot

Functional Analysis of Casein Kinase 1 in a Minimal Circadian System

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-4939-9232-4_4openalex-snapshot

Quantitative Phosphoproteomic Using Titanium Dioxide Micro-Columns and Label-Free Quantitation

inferred← citeshttps://doi.org/10.1016/j.mcpro.2021.100172openalex-snapshot

The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.1093/jxb/erad290openalex-snapshot

A phospho-dawn of protein modification anticipates light onset in the picoeukaryoteOstreococcus tauri

inferred← citeshttps://doi.org/10.1101/287862openalex-snapshot

Circadian protein regulation in the green lineage I. A phospho-dawn of protein modification anticipates light onset in the picoeukaryote O. tauri

inferred← citeshttps://doi.org/10.1101/760892openalex-snapshot

The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thaliana

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