On the public citation graph

trio-sga : facilitating de novo assembly of highly heterozygous genomes with parent-child trios

https://doi.org/10.1101/051516
0 signed · 39 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-642-20036-6_5openalex-snapshot
Hapsembler: An Assembler for Highly Polymorphic Genomes
inferredcites →https://doi.org/10.1016/j.ajhg.2009.01.005openalex-snapshot
A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
inferredcites →https://doi.org/10.1016/j.tcs.2012.02.002openalex-snapshot
Lightweight algorithms for constructing and inverting the BWT of string collections
inferredcites →https://doi.org/10.1038/nature10158openalex-snapshot
Genome sequence and analysis of the tuber crop potato
inferredcites →https://doi.org/10.1038/nature11413openalex-snapshot
The oyster genome reveals stress adaptation and complexity of shell formation
inferredcites →https://doi.org/10.1038/nature12211openalex-snapshot
The Norway spruce genome sequence and conifer genome evolution
inferredcites →https://doi.org/10.1038/ng.3215openalex-snapshot
The genomic and phenotypic diversity of Schizosaccharomyces pombe
inferredcites →https://doi.org/10.1038/nmeth.3454openalex-snapshot
Assembly and diploid architecture of an individual human genome via single-molecule technologies
inferredcites →https://doi.org/10.1038/nrg2664openalex-snapshot
The genetics of inbreeding depression
inferredcites →https://doi.org/10.1093/bioinformatics/btq217openalex-snapshot
Efficient construction of an assembly string graph using the FM-index
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu023openalex-snapshot
Exploring genome characteristics and sequence quality without a reference
inferredcites →https://doi.org/10.1093/jhered/esp086openalex-snapshot
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
inferredcites →https://doi.org/10.1093/jhered/est050openalex-snapshot
The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment
inferredcites →https://doi.org/10.1093/jhered/est084openalex-snapshot
The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes
inferredcites →https://doi.org/10.1101/gr.097261.109openalex-snapshot
De novo assembly of human genomes with massively parallel short read sequencing
inferredcites →https://doi.org/10.1101/gr.126953.111openalex-snapshot
Efficient de novo assembly of large genomes using compressed data structures
inferredcites →https://doi.org/10.1101/gr.170720.113openalex-snapshot
Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
inferredcites →https://doi.org/10.1101/gr.3722605openalex-snapshot
Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
inferredcites →https://doi.org/10.1109/sfcs.2000.892127openalex-snapshot
Opportunistic data structures with applications
inferredcites →https://doi.org/10.1126/science.282.5396.2012openalex-snapshot
Genome Sequence of the Nematode C. elegans : A Platform for Investigating Biology
inferredcites →https://doi.org/10.1126/science.287.5461.2185openalex-snapshot
The Genome Sequence of Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1004234openalex-snapshot
A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness
inferredcites →https://doi.org/10.1534/genetics.104.034686openalex-snapshot
A Genetic Linkage Map of the Mimetic ButterflyHeliconius melpomene
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/evl3.12openalex-snapshot
No evidence for maintenance of a sympatricHeliconiusspecies barrier by chromosomal inversions
inferred← citeshttps://doi.org/10.1016/j.gpb.2019.01.006openalex-snapshot
Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir Sinensis
inferred← citeshttps://doi.org/10.1038/hdy.2016.107openalex-snapshot
The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno
inferred← citeshttps://doi.org/10.1038/nbt.4277openalex-snapshot
De novo assembly of haplotype-resolved genomes with trio binning
inferred← citeshttps://doi.org/10.1038/s41576-024-00718-wopenalex-snapshot
Genome assembly in the telomere-to-telomere era
inferred← citeshttps://doi.org/10.1093/g3journal/jkac210openalex-snapshot
Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae)
inferred← citeshttps://doi.org/10.1093/gigascience/gix125openalex-snapshot
Genome assembly of the Pink Ipê (Handroanthus impetiginosus , Bignoniaceae ), a highly valued, ecologically keystone Neotropical timber forest tree
inferred← citeshttps://doi.org/10.1101/083931openalex-snapshot
Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies
inferred← citeshttps://doi.org/10.1101/580159openalex-snapshot
A haplotype-aware de novo assembly of related individuals using pedigree graph
inferred← citeshttps://doi.org/10.1101/779678openalex-snapshot
A novel terpene synthase produces an anti-aphrodisiac pheromone in the butterfly Heliconius melpomene
inferred← citeshttps://doi.org/10.1101/840447openalex-snapshot
WENGAN: Efficient and high quality hybrid de novo assembly of human genomes
inferred← citeshttps://doi.org/10.1111/eva.70139openalex-snapshot
From the Americas to Southeast Asia : Navigating The Genomic Waves of Fall Armyworm (Spodoptera frugiperda) Invasions
inferred← citeshttps://doi.org/10.1186/s13059-019-1828-7openalex-snapshot
Structural variant calling: the long and the short of it
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001022openalex-snapshot
A novel terpene synthase controls differences in anti-aphrodisiac pheromone production between closely related Heliconius butterflies
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.