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A haplotype-aware de novo assembly of related individuals using pedigree graph

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-319-05269-4_19openalex-snapshot

WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads

inferredcites →https://doi.org/10.1007/978-3-319-56970-3_11openalex-snapshot

Superbubbles, Ultrabubbles and Cacti

inferredcites →https://doi.org/10.1007/978-3-319-56970-3_8openalex-snapshot

Resolving Multicopy Duplications de novo Using Polyploid Phasing

inferredcites →https://doi.org/10.1038/nbt.2288openalex-snapshot

A hybrid approach for the automated finishing of bacterial genomes

inferredcites →https://doi.org/10.1038/nbt.2727openalex-snapshot

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

inferredcites →https://doi.org/10.1038/nbt.3238openalex-snapshot

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

inferredcites →https://doi.org/10.1038/nbt.4227openalex-snapshot

Variation graph toolkit improves read mapping by representing genetic variation in the reference

inferredcites →https://doi.org/10.1038/nbt.4277openalex-snapshot

De novo assembly of haplotype-resolved genomes with trio binning

inferredcites →https://doi.org/10.1038/ng.3847openalex-snapshot

Contrasting evolutionary genome dynamics between domesticated and wild yeasts

inferredcites →https://doi.org/10.1038/nmeth.2474openalex-snapshot

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

inferredcites →https://doi.org/10.1038/nmeth.4035openalex-snapshot

Phased diploid genome assembly with single-molecule real-time sequencing

inferredcites →https://doi.org/10.1038/nrg2950openalex-snapshot

The importance of phase information for human genomics

inferredcites →https://doi.org/10.1038/s41587-019-0217-9openalex-snapshot

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btv440openalex-snapshot

FermiKit: assembly-based variant calling for Illumina resequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btv688openalex-snapshot

hybrid SPA des : an algorithm for hybrid assembly of short and long reads

inferredcites →https://doi.org/10.1093/bioinformatics/btw276openalex-snapshot

Read-based phasing of related individuals

inferredcites →https://doi.org/10.1093/bioinformatics/bty279openalex-snapshot

A graph-based approach to diploid genome assembly

inferredcites →https://doi.org/10.1093/nar/gkw294openalex-snapshot

Redundans: an assembly pipeline for highly heterozygous genomes

inferredcites →https://doi.org/10.1101/051516openalex-snapshot

trio-sga : facilitating de novo assembly of highly heterozygous genomes with parent-child trios

inferredcites →https://doi.org/10.1101/gr.126953.111openalex-snapshot

Efficient de novo assembly of large genomes using compressed data structures

inferredcites →https://doi.org/10.1101/gr.213405.116openalex-snapshot

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

inferredcites →https://doi.org/10.1101/gr.214270.116openalex-snapshot

Fast and accurate de novo genome assembly from long uncorrected reads

inferredcites →https://doi.org/10.1101/gr.214874.116openalex-snapshot

Direct determination of diploid genome sequences

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

inferredcites →https://doi.org/10.1146/annurev-genom-090314-050032openalex-snapshot

The Theory and Practice of Genome Sequence Assembly

inferredcites →https://doi.org/10.1371/journal.pbio.0050254openalex-snapshot

The Diploid Genome Sequence of an Individual Human

inferredcites →https://doi.org/10.22028/d291-27252openalex-snapshot

Computational haplotyping : theory and practice

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/g3journal/jkac210openalex-snapshot

Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae)

inferred← citeshttps://doi.org/10.1101/810341openalex-snapshot

Accurate chromosome-scale haplotype-resolved assembly of human genomes

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